beta-galactosidase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Pol_BBD | PF22936 | 14 - 87 | 7e-19 | Pol polyprotein, beta-barrel domain |
| gag_pre-integrs | PF13976 | 136 - 191 | 1.5e-13 | GAG-pre-integrase domain |
| rve | PF00665 | 207 - 306 | 8.2e-11 | Integrase core domain |
| RVT_2 | PF07727 | 629 - 693 | 7.7e-19 | Reverse transcriptase (RNA-dependent DNA polymerase) |
| RVT_2 | PF07727 | 694 - 811 | 1.3e-23 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1529 |
| Acc36I | ACCTGC | 1 cut(s) | 345 |
| Acc65I | GGTACC | 1 cut(s) | 2467 |
| AccB1I | GGYRCC | 2 cut(s) | 56, 2467 |
| AccII | CGCG | 1 cut(s) | 383 |
| AccIII | TCCGGA | 1 cut(s) | 164 |
| AciI | CCGC | 3 cut(s) | 383, 1087, 2119 |
| AclI | AACGTT | 1 cut(s) | 2045 |
| AclWI | GGATC | 6 cut(s) | 175, 318, 378, 1826, 1839, 1978 |
| AcoI | YGGCCR | 2 cut(s) | 564, 1503 |
| AcsI | RAATTY | 6 cut(s) | 427, 447, 1076, 1304, 2613, 2875 |
| AcuI | CTGAAG | 3 cut(s) | 1052, 1278, 1599 |
| AdeI | CACNNNGTG | 2 cut(s) | 2087, 2851 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 158, 1749, 1913, 2645 |
| AflII | CTTAAG | 3 cut(s) | 1207, 2165, 2303 |
| AflIII | ACRYGT | 2 cut(s) | 554, 902 |
| AgsI | TTSAA | 8 cut(s) | 256, 791, 874, 1316, 1466, 1520, 2620, 2899 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2731 |
| AhlI | ACTAGT | 3 cut(s) | 112, 1610, 1616 |
| AjnI | CCWGG | 6 cut(s) | 320, 394, 1270, 1570, 2330, 2638 |
| AleI | CACNNNNGTG | 1 cut(s) | 1209 |
| Alw21I | GWGCWC | 2 cut(s) | 403, 2485 |
| Alw26I | GTCTC | 6 cut(s) | 231, 1110, 1385, 1501, 2254, 2384 |
| AlwI | GGATC | 6 cut(s) | 175, 318, 378, 1826, 1839, 1978 |
| Ama87I | CYCGRG | 4 cut(s) | 408, 1199, 1668, 2581 |
| Aor13HI | TCCGGA | 1 cut(s) | 164 |
| AoxI | GGCC | 2 cut(s) | 564, 1503 |
| ApoI | RAATTY | 6 cut(s) | 427, 447, 1076, 1304, 2613, 2875 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 738, 770, 889, 921 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 756, 2104 |
| Asp718I | GGTACC | 1 cut(s) | 2467 |
| AspLEI | GCGC | 1 cut(s) | 2508 |
| AspS9I | GGNCC | 4 cut(s) | 162, 650, 1381, 1662 |
| AsuC2I | CCSGG | 2 cut(s) | 1200, 1201 |
| AsuHPI | GGTGA | 7 cut(s) | 118, 152, 310, 884, 2073, 2309, 2572 |
| AsuII | TTCGAA | 1 cut(s) | 425 |
| AsuNHI | GCTAGC | 1 cut(s) | 2266 |
| AvaI | CYCGRG | 4 cut(s) | 408, 1199, 1668, 2581 |
| AvaII | GGWCC | 4 cut(s) | 162, 650, 1381, 1662 |
| BaeGI | GKGCMC | 3 cut(s) | 976, 991, 1206 |
| BalI | TGGCCA | 1 cut(s) | 566 |
| BamHI | GGATCC | 1 cut(s) | 1831 |
| BanI | GGYRCC | 2 cut(s) | 56, 2467 |
| BanII | GRGCYC | 2 cut(s) | 666, 2485 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2114, 2146 |
| BauI | CACGAG | 3 cut(s) | 969, 1136, 2085 |
| BbsI | GAAGAC | 3 cut(s) | 96, 1043, 1527 |
| Bbv12I | GWGCWC | 2 cut(s) | 403, 2485 |
| BbvCI | CCTCAGC | 1 cut(s) | 2820 |
| BccI | CCATC | 4 cut(s) | 372, 1044, 1858, 1961 |
| BceAI | ACGGC | 1 cut(s) | 450 |
| BciT130I | CCWGG | 6 cut(s) | 322, 396, 1272, 1572, 2332, 2640 |
| BciVI | GTATCC | 1 cut(s) | 2466 |
| BcnI | CCSGG | 2 cut(s) | 1200, 1201 |
| BcoDI | GTCTC | 6 cut(s) | 231, 1110, 1385, 1501, 2254, 2384 |
| BcuI | ACTAGT | 3 cut(s) | 112, 1610, 1616 |
| BfmI | CTRYAG | 2 cut(s) | 1926, 2255 |
| BfoI | RGCGCY | 1 cut(s) | 2509 |
| BfrI | CTTAAG | 3 cut(s) | 1207, 2165, 2303 |
| BfuAI | ACCTGC | 1 cut(s) | 345 |
| BfuI | GTATCC | 1 cut(s) | 2466 |
| BmcAI | AGTACT | 5 cut(s) | 1279, 1615, 2309, 2624, 2652 |
| Bme1390I | CCNGG | 8 cut(s) | 322, 396, 1200, 1201, 1272, 1572, 2332, 2640 |
| Bme18I | GGWCC | 4 cut(s) | 162, 650, 1381, 1662 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2731 |
| BmeT110I | CYCGRG | 4 cut(s) | 408, 1199, 1668, 2581 |
| BmgT120I | GGNCC | 4 cut(s) | 162, 650, 1381, 1662 |
| BmiI | GGNNCC | 6 cut(s) | 58, 163, 651, 1383, 1833, 2469 |
| BmrFI | CCNGG | 8 cut(s) | 322, 396, 1200, 1201, 1272, 1572, 2332, 2640 |
| BmrI | ACTGGG | 2 cut(s) | 1379, 1718 |
| BmtI | GCTAGC | 1 cut(s) | 2270 |
| BmuI | ACTGGG | 2 cut(s) | 1379, 1718 |
| BpiI | GAAGAC | 3 cut(s) | 96, 1043, 1527 |
| BpmI | CTGGAG | 1 cut(s) | 2622 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2820 |
| Bpu14I | TTCGAA | 1 cut(s) | 425 |
| BpuEI | CTTGAG | 1 cut(s) | 2888 |
| BpuMI | CCSGG | 2 cut(s) | 1200, 1201 |
| BsaAI | YACGTR | 1 cut(s) | 2885 |
| BsaI | GGTCTC | 1 cut(s) | 1385 |
| BsaJI | CCNNGG | 4 cut(s) | 321, 880, 1199, 2331 |
| BsaWI | WCCGGW | 1 cut(s) | 164 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 574, 604, 1519, 1549, 2035, 2065 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 158, 1749, 1913, 2645 |
| Bse1I | ACTGG | 5 cut(s) | 1385, 1439, 1493, 1724, 2230 |
| Bse3DI | GCAATG | 3 cut(s) | 1542, 1857, 2236 |
| BseAI | TCCGGA | 1 cut(s) | 164 |
| BseBI | CCWGG | 6 cut(s) | 322, 396, 1272, 1572, 2332, 2640 |
| BseDI | CCNNGG | 4 cut(s) | 321, 880, 1199, 2331 |
| BseGI | GGATG | 8 cut(s) | 475, 1200, 1260, 1428, 1482, 1825, 2215, 2605 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 158, 1749, 1913, 2645 |
| BseMI | GCAATG | 3 cut(s) | 1542, 1857, 2236 |
| BseMII | CTCAG | 8 cut(s) | 252, 338, 2030, 2160, 2442, 2811, 2817, 2861 |
| BseNI | ACTGG | 5 cut(s) | 1385, 1439, 1493, 1724, 2230 |
| BseRI | GAGGAG | 1 cut(s) | 1368 |
| BseSI | GKGCMC | 3 cut(s) | 976, 991, 1206 |
| BsgI | GTGCAG | 1 cut(s) | 1835 |
| Bsh1236I | CGCG | 1 cut(s) | 383 |
| Bsh1285I | CGRYCG | 1 cut(s) | 337 |
| BshFI | GGCC | 2 cut(s) | 566, 1505 |
| BshNI | GGYRCC | 2 cut(s) | 56, 2467 |
| BsiEI | CGRYCG | 1 cut(s) | 337 |
| BsiHKAI | GWGCWC | 2 cut(s) | 403, 2485 |
| BsiHKCI | CYCGRG | 4 cut(s) | 408, 1199, 1668, 2581 |
| BsiSI | CCGG | 2 cut(s) | 165, 1200 |
| BslFI | GGGAC | 3 cut(s) | 391, 663, 1517 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 158, 1749, 1913, 2645 |
| BsmAI | GTCTC | 6 cut(s) | 231, 1110, 1385, 1501, 2254, 2384 |
| BsmFI | GGGAC | 3 cut(s) | 391, 663, 1517 |
| BsmI | GAATGC | 1 cut(s) | 262 |
| BsnI | GGCC | 2 cut(s) | 566, 1505 |
| Bso31I | GGTCTC | 1 cut(s) | 1385 |
| BsoBI | CYCGRG | 4 cut(s) | 408, 1199, 1668, 2581 |
| Bsp119I | TTCGAA | 1 cut(s) | 425 |
| Bsp1286I | GDGCHC | 6 cut(s) | 403, 666, 976, 991, 1206, 2485 |
| Bsp13I | TCCGGA | 1 cut(s) | 164 |
| Bsp19I | CCATGG | 1 cut(s) | 880 |
| BspACI | CCGC | 3 cut(s) | 383, 1087, 2119 |
| BspANI | GGCC | 2 cut(s) | 566, 1505 |
| BspCNI | CTCAG | 8 cut(s) | 253, 339, 2029, 2159, 2443, 2812, 2818, 2862 |
| BspEI | TCCGGA | 1 cut(s) | 164 |
| BspFNI | CGCG | 1 cut(s) | 383 |
| BspLI | GGNNCC | 6 cut(s) | 58, 163, 651, 1383, 1833, 2469 |
| BspMAI | CTGCAG | 1 cut(s) | 2259 |
| BspMI | ACCTGC | 1 cut(s) | 345 |
| BspOI | GCTAGC | 1 cut(s) | 2270 |
| BspPI | GGATC | 6 cut(s) | 175, 318, 378, 1826, 1839, 1978 |
| BspQI | GCTCTTC | 3 cut(s) | 1297, 1311, 1874 |
| BspT104I | TTCGAA | 1 cut(s) | 425 |
| BspT107I | GGYRCC | 2 cut(s) | 56, 2467 |
| BspTI | CTTAAG | 3 cut(s) | 1207, 2165, 2303 |
| BspTNI | GGTCTC | 1 cut(s) | 1385 |
| BsrDI | GCAATG | 3 cut(s) | 1542, 1857, 2236 |
| BsrI | ACTGG | 5 cut(s) | 1385, 1439, 1493, 1724, 2230 |
| BssECI | CCNNGG | 4 cut(s) | 321, 880, 1199, 2331 |
| BssSI | CACGAG | 3 cut(s) | 969, 1136, 2085 |
| BssT1I | CCWWGG | 1 cut(s) | 880 |
| Bst2BI | CACGAG | 3 cut(s) | 969, 1136, 2085 |
| Bst2UI | CCWGG | 6 cut(s) | 322, 396, 1272, 1572, 2332, 2640 |
| Bst6I | CTCTTC | 5 cut(s) | 1297, 1311, 1854, 1874, 2777 |
| BstAFI | CTTAAG | 3 cut(s) | 1207, 2165, 2303 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1900 |
| BstBAI | YACGTR | 1 cut(s) | 2885 |
| BstBI | TTCGAA | 1 cut(s) | 425 |
| BstC8I | GCNNGC | 4 cut(s) | 1403, 1993, 2268, 2485 |
| BstDSI | CCRYGG | 1 cut(s) | 880 |
| BstEII | GGTNACC | 1 cut(s) | 2079 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 156 |
| BstF5I | GGATG | 8 cut(s) | 475, 1200, 1260, 1428, 1482, 1825, 2215, 2605 |
| BstFNI | CGCG | 1 cut(s) | 383 |
| BstH2I | RGCGCY | 1 cut(s) | 2509 |
| BstHHI | GCGC | 1 cut(s) | 2508 |
| BstMAI | GTCTC | 6 cut(s) | 231, 1110, 1385, 1501, 2254, 2384 |
| BstMCI | CGRYCG | 1 cut(s) | 337 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 1025, 1093, 1900, 2057, 2263, 2708 |
| BstNI | CCWGG | 6 cut(s) | 322, 396, 1272, 1572, 2332, 2640 |
| BstNSI | RCATGY | 2 cut(s) | 558, 906 |
| BstPI | GGTNACC | 1 cut(s) | 2079 |
| BstSCI | CCNGG | 8 cut(s) | 320, 394, 1198, 1199, 1270, 1570, 2330, 2638 |
| BstSFI | CTRYAG | 2 cut(s) | 1926, 2255 |
| BstSLI | GKGCMC | 3 cut(s) | 976, 991, 1206 |
| BstUI | CGCG | 1 cut(s) | 383 |
| BstV2I | GAAGAC | 3 cut(s) | 96, 1043, 1527 |
| BstX2I | RGATCY | 2 cut(s) | 310, 1831 |
| BstYI | RGATCY | 2 cut(s) | 310, 1831 |
| BsuI | GTATCC | 1 cut(s) | 2466 |
| BsuRI | GGCC | 2 cut(s) | 566, 1505 |
| BtgI | CCRYGG | 1 cut(s) | 880 |
| BtgZI | GCGATG | 2 cut(s) | 446, 1029 |
| BtsCI | GGATG | 8 cut(s) | 475, 1200, 1260, 1428, 1482, 1825, 2215, 2605 |
| BtsIMutI | CAGTG | 4 cut(s) | 177, 666, 1980, 2223 |
| BveI | ACCTGC | 1 cut(s) | 345 |
| Cac8I | GCNNGC | 4 cut(s) | 1403, 1993, 2268, 2485 |
| CfoI | GCGC | 1 cut(s) | 2508 |
| Cfr13I | GGNCC | 4 cut(s) | 162, 650, 1381, 1662 |
| Cfr9I | CCCGGG | 1 cut(s) | 1199 |
| DraI | TTTAAA | 1 cut(s) | 9 |
| DraIII | CACNNNGTG | 2 cut(s) | 2087, 2851 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1529 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2731 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1529 |
| EaeI | YGGCCR | 2 cut(s) | 564, 1503 |
| Eam1104I | CTCTTC | 5 cut(s) | 1297, 1311, 1854, 1874, 2777 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2731 |
| EarI | CTCTTC | 5 cut(s) | 1297, 1311, 1854, 1874, 2777 |
| Ecl136II | GAGCTC | 1 cut(s) | 2483 |
| Eco130I | CCWWGG | 1 cut(s) | 880 |
| Eco24I | GRGCYC | 2 cut(s) | 666, 2485 |
| Eco31I | GGTCTC | 1 cut(s) | 1385 |
| Eco32I | GATATC | 1 cut(s) | 240 |
| Eco47I | GGWCC | 4 cut(s) | 162, 650, 1381, 1662 |
| Eco53kI | GAGCTC | 1 cut(s) | 2483 |
| Eco57I | CTGAAG | 3 cut(s) | 1052, 1278, 1599 |
| Eco88I | CYCGRG | 4 cut(s) | 408, 1199, 1668, 2581 |
| Eco91I | GGTNACC | 1 cut(s) | 2079 |
| EcoICRI | GAGCTC | 1 cut(s) | 2483 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 156 |
| EcoO109I | RGGNCCY | 1 cut(s) | 650 |
| EcoO65I | GGTNACC | 1 cut(s) | 2079 |
| EcoRI | GAATTC | 2 cut(s) | 427, 1304 |
| EcoRII | CCWGG | 6 cut(s) | 320, 394, 1270, 1570, 2330, 2638 |
| EcoRV | GATATC | 1 cut(s) | 240 |
| EcoT14I | CCWWGG | 1 cut(s) | 880 |
| EcoT22I | ATGCAT | 2 cut(s) | 1825, 2577 |
| EcoT38I | GRGCYC | 2 cut(s) | 666, 2485 |
| ErhI | CCWWGG | 1 cut(s) | 880 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1980, 2012, 2297, 2329 |
| FaqI | GGGAC | 3 cut(s) | 391, 663, 1517 |
| FauI | CCCGC | 1 cut(s) | 376 |
| FauNDI | CATATG | 5 cut(s) | 69, 993, 1765, 2545, 2595 |
| FokI | GGATG | 8 cut(s) | 462, 1207, 1247, 1415, 1469, 1832, 2222, 2612 |
| FriOI | GRGCYC | 2 cut(s) | 666, 2485 |
| GlaI | GCGC | 1 cut(s) | 2507 |
| GsuI | CTGGAG | 1 cut(s) | 2622 |
| HaeII | RGCGCY | 1 cut(s) | 2509 |
| HaeIII | GGCC | 2 cut(s) | 566, 1505 |
| HapII | CCGG | 2 cut(s) | 165, 1200 |
| HhaI | GCGC | 1 cut(s) | 2508 |
| Hin6I | GCGC | 1 cut(s) | 2506 |
| HinP1I | GCGC | 1 cut(s) | 2506 |
| HincII | GTYRAC | 1 cut(s) | 2736 |
| HindII | GTYRAC | 1 cut(s) | 2736 |
| HpaII | CCGG | 2 cut(s) | 165, 1200 |
| HphI | GGTGA | 7 cut(s) | 118, 152, 310, 884, 2073, 2309, 2572 |
| Hpy166II | GTNNAC | 8 cut(s) | 892, 908, 1604, 1743, 1947, 2013, 2300, 2736 |
| Hpy188III | TCNNGA | 9 cut(s) | 165, 308, 368, 408, 657, 2375, 2459, 2678, 2905 |
| Hpy8I | GTNNAC | 8 cut(s) | 892, 908, 1604, 1743, 1947, 2013, 2300, 2736 |
| HpyCH4IV | ACGT | 4 cut(s) | 544, 2021, 2045, 2884 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 1025, 1093, 1900, 2057, 2263, 2708 |
| HpySE526I | ACGT | 4 cut(s) | 544, 2021, 2045, 2884 |
| HspAI | GCGC | 1 cut(s) | 2506 |
| Kpn2I | TCCGGA | 1 cut(s) | 164 |
| KpnI | GGTACC | 1 cut(s) | 2471 |
| LguI | GCTCTTC | 3 cut(s) | 1297, 1311, 1874 |
| LmnI | GCTCC | 5 cut(s) | 278, 398, 1426, 2056, 2641 |
| MaeII | ACGT | 4 cut(s) | 544, 2021, 2045, 2884 |
| MfeI | CAATTG | 1 cut(s) | 251 |
| MflI | RGATCY | 2 cut(s) | 310, 1831 |
| MhlI | GDGCHC | 6 cut(s) | 403, 666, 976, 991, 1206, 2485 |
| MlsI | TGGCCA | 1 cut(s) | 566 |
| MluNI | TGGCCA | 1 cut(s) | 566 |
| MlyI | GAGTC | 7 cut(s) | 272, 420, 542, 580, 1637, 2572, 2599 |
| MmeI | TCCRAC | 1 cut(s) | 2382 |
| Mox20I | TGGCCA | 1 cut(s) | 566 |
| Mph1103I | ATGCAT | 2 cut(s) | 1825, 2577 |
| MroI | TCCGGA | 1 cut(s) | 164 |
| MroXI | GAANNNNTTC | 2 cut(s) | 756, 2104 |
| MscI | TGGCCA | 1 cut(s) | 566 |
| MseI | TTAA | 8 cut(s) | 8, 738, 813, 849, 1208, 2166, 2304, 2627 |
| MslI | CAYNNNNRTG | 3 cut(s) | 639, 1209, 2598 |
| Msp20I | TGGCCA | 1 cut(s) | 566 |
| MspCI | CTTAAG | 3 cut(s) | 1207, 2165, 2303 |
| MspI | CCGG | 2 cut(s) | 165, 1200 |
| MspR9I | CCNGG | 8 cut(s) | 322, 396, 1200, 1201, 1272, 1572, 2332, 2640 |
| MunI | CAATTG | 1 cut(s) | 251 |
| Mva1269I | GAATGC | 1 cut(s) | 262 |
| MvaI | CCWGG | 6 cut(s) | 322, 396, 1272, 1572, 2332, 2640 |
| MvnI | CGCG | 1 cut(s) | 383 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 1025, 1093, 1900, 2057, 2263, 2708 |
| NciI | CCSGG | 2 cut(s) | 1200, 1201 |
| NcoI | CCATGG | 1 cut(s) | 880 |
| NdeI | CATATG | 5 cut(s) | 69, 993, 1765, 2545, 2595 |
| NheI | GCTAGC | 1 cut(s) | 2266 |
| NlaIV | GGNNCC | 6 cut(s) | 58, 163, 651, 1383, 1833, 2469 |
| NmuCI | GTSAC | 3 cut(s) | 124, 2079, 2927 |
| NsiI | ATGCAT | 2 cut(s) | 1825, 2577 |
| NspI | RCATGY | 2 cut(s) | 558, 906 |
| NspV | TTCGAA | 1 cut(s) | 425 |
| OliI | CACNNNNGTG | 1 cut(s) | 1209 |
| PciI | ACATGT | 2 cut(s) | 554, 902 |
| PciSI | GCTCTTC | 3 cut(s) | 1297, 1311, 1874 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2083 |
| PctI | GAATGC | 1 cut(s) | 262 |
| PdmI | GAANNNNTTC | 2 cut(s) | 756, 2104 |
| PfeI | GAWTC | 7 cut(s) | 50, 631, 1343, 1769, 1780, 1978, 2346 |
| PfoI | TCCNGGA | 1 cut(s) | 2638 |
| PleI | GAGTC | 7 cut(s) | 271, 419, 541, 579, 1636, 2571, 2598 |
| PpsI | GAGTC | 7 cut(s) | 271, 419, 541, 579, 1636, 2571, 2598 |
| Ppu21I | YACGTR | 1 cut(s) | 2885 |
| PpuMI | RGGWCCY | 1 cut(s) | 650 |
| PscI | ACATGT | 2 cut(s) | 554, 902 |
| Psp124BI | GAGCTC | 1 cut(s) | 2485 |
| Psp1406I | AACGTT | 1 cut(s) | 2045 |
| Psp5II | RGGWCCY | 1 cut(s) | 650 |
| Psp6I | CCWGG | 6 cut(s) | 320, 394, 1270, 1570, 2330, 2638 |
| PspEI | GGTNACC | 1 cut(s) | 2079 |
| PspGI | CCWGG | 6 cut(s) | 320, 394, 1270, 1570, 2330, 2638 |
| PspN4I | GGNNCC | 6 cut(s) | 58, 163, 651, 1383, 1833, 2469 |
| PspPI | GGNCC | 4 cut(s) | 162, 650, 1381, 1662 |
| PspPPI | RGGWCCY | 1 cut(s) | 650 |
| PstI | CTGCAG | 1 cut(s) | 2259 |
| PsuI | RGATCY | 2 cut(s) | 310, 1831 |
| RseI | CAYNNNNRTG | 3 cut(s) | 639, 1209, 2598 |
| SacI | GAGCTC | 1 cut(s) | 2485 |
| SapI | GCTCTTC | 3 cut(s) | 1297, 1311, 1874 |
| SaqAI | TTAA | 8 cut(s) | 8, 738, 813, 849, 1208, 2166, 2304, 2627 |
| Sau96I | GGNCC | 4 cut(s) | 162, 650, 1381, 1662 |
| ScaI | AGTACT | 5 cut(s) | 1279, 1615, 2309, 2624, 2652 |
| SchI | GAGTC | 7 cut(s) | 272, 420, 542, 580, 1637, 2572, 2599 |
| ScrFI | CCNGG | 8 cut(s) | 322, 396, 1200, 1201, 1272, 1572, 2332, 2640 |
| SduI | GDGCHC | 6 cut(s) | 403, 666, 976, 991, 1206, 2485 |
| SfcI | CTRYAG | 2 cut(s) | 1926, 2255 |
| SfuI | TTCGAA | 1 cut(s) | 425 |
| SinI | GGWCC | 4 cut(s) | 162, 650, 1381, 1662 |
| SmaI | CCCGGG | 1 cut(s) | 1201 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 639, 1209, 2598 |
| SmlI | CTYRAG | 4 cut(s) | 1207, 2165, 2303, 2903 |
| SmoI | CTYRAG | 4 cut(s) | 1207, 2165, 2303, 2903 |
| SpeI | ACTAGT | 3 cut(s) | 112, 1610, 1616 |
| SrfI | GCCCGGGC | 1 cut(s) | 1201 |
| SsiI | CCGC | 3 cut(s) | 383, 1087, 2119 |
| SstI | GAGCTC | 1 cut(s) | 2485 |
| StyD4I | CCNGG | 8 cut(s) | 320, 394, 1198, 1199, 1270, 1570, 2330, 2638 |
| StyI | CCWWGG | 1 cut(s) | 880 |
| TaiI | ACGT | 4 cut(s) | 547, 2024, 2048, 2887 |
| TaqI | TCGA | 2 cut(s) | 425, 2479 |
| TaqII | GACCGA | 2 cut(s) | 323, 2067 |
| TatI | WGTACW | 6 cut(s) | 1277, 1613, 2307, 2367, 2622, 2650 |
| TfiI | GAWTC | 7 cut(s) | 50, 631, 1343, 1769, 1780, 1978, 2346 |
| Tru1I | TTAA | 8 cut(s) | 8, 738, 813, 849, 1208, 2166, 2304, 2627 |
| Tru9I | TTAA | 8 cut(s) | 8, 738, 813, 849, 1208, 2166, 2304, 2627 |
| TscAI | CASTG | 4 cut(s) | 177, 673, 1980, 2230 |
| TseFI | GTSAC | 3 cut(s) | 124, 2079, 2927 |
| Tsp45I | GTSAC | 3 cut(s) | 124, 2079, 2927 |
| TspGWI | ACGGA | 5 cut(s) | 265, 767, 1244, 1394, 2862 |
| TspMI | CCCGGG | 1 cut(s) | 1199 |
| TspRI | CASTG | 4 cut(s) | 177, 673, 1980, 2230 |
| Vha464I | CTTAAG | 3 cut(s) | 1207, 2165, 2303 |
| VpaK11BI | GGWCC | 4 cut(s) | 162, 650, 1381, 1662 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 156 |
| XapI | RAATTY | 6 cut(s) | 427, 447, 1076, 1304, 2613, 2875 |
| XbaI | TCTAGA | 1 cut(s) | 656 |
| XceI | RCATGY | 2 cut(s) | 558, 906 |
| XmaI | CCCGGG | 1 cut(s) | 1199 |
| XmnI | GAANNNNTTC | 2 cut(s) | 756, 2104 |
| ZrmI | AGTACT | 5 cut(s) | 1279, 1615, 2309, 2624, 2652 |
| Zsp2I | ATGCAT | 2 cut(s) | 1825, 2577 |