FvH4_3g39271

Reverse transcriptase (RNA-dependent DNA polymerase)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000071
Physical Location & Seq
Forward (+)
33442455 .. 33444914
2460 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g39271.t1

Sequence Viewer

Length: 2193 bp
ATGTCTCGCCGCCTCCGCCTCCGCCTCTGCTACTACAACCCCGTCGATCCTTGCGCCTTCAAGCTCTCTCTCACCAGAACGACTCCTCTTCGTCTCTTCCGGCCTGTCTTCGGTCCGACCTCATCTCCAGAACAAGCTCTGGCGGTGTCGCTTCCTTCCCCATCCCACTCAGCTCCACAAGCTCCTCAACCCAATTTCGGTCGCCCTACTCCACCTTTGTATCCTGATCAGTCGACTTCATCCTCTCTGAGTCGTCTTCCTCTCATCCCTCAATCAGTCCGATCACCGTCCAGTCCAACCCATTCGTTGCCCTCCGGCCTCGAACCATCTCCTCCAGTCCAACCTGATACCCACATCGTTTCCCATCCAGACCCGCCGCCTAACATAGACCATCCACCTCCGCCTCTCACAGACCAGCCACCTACCCACTTGCCGAACCCGCAGCCTCTCCGTCGCTCTGCTCGGCAAACGACGCCTTCCGTTCGGTTACATGATTTTGTGTGTTCACATGTGACATCGAGCTTCCCAAACTCATTGTCTTCTTCCTCTCCAGGTCCTGTCAAAATCAAAGGTACGAGATATCCTCTGTGCAATTATGTGTCATATCATCGTTATACTCCTGCGCATGCCTCTTTTATTGCTCAGATATCCCATGCCAGTGAACCACGCACTTATGCCGAAGCTGCACATCATCCAGAATGGCAAGAAGCGATGCGTTCTGAATTGCAGGCATTGGAGGATAATAACACTTGGACTCTCACCACTTTACCGGTTGGCAAGACTCCTATTGATTGTCGGTGGGTTTACAAGATCAAGCATCGATCAGACGGTTCTATTGAGAGGTACAAAGCTCATTTGGTTGCCAAGGGATTCACTCAAATGGAAGGTATCGATTATCATGACACTTTCTCACCCACTGCCAAAATTATTTCTGTTCGATGCTTATTGTCTTTGGCGGCTGCTCAAAATTGGTCCATTCATCAGTTGGATGTCAATAATGCTTTTTTGCTTGGTGATCTTAATGAGGAAATTTTCATGTCTCCTCCTCCTGGTCTTCGGCGACAGGGGGAGCATTTGGTTTGTCGCCTTAATAAGTCTTTGTATGGTTTAAAACAAGCATCCCGGCAATGGTTTGCCAAATTTTCAGATGCTATTCGATCAGCTGGCTATATTCAGTCCAAGGCAGATTACTCATTATTCACTCGAAAGCAAGGGAAGTCATTCACAGCTTTATTGATATATGTTGATGATATATTAATTACTGGTAATGATCCGGTTGCTATTTCTGCTTTAAAGAATTTTCTGAATAGCCGGTTTCGTATTAAGGATCTTGGTGATTTAAAGTATTTTCTTGGCATAGAGGTTTCTCGTTCCAAAAGTGGAATCTATATTTCTCAGCGCAAGTATGCATTGGAGATCATCAGTGATGCAGGTTTATTAGGAGCAGCTCATGTAGATACTCCTATGGAGCGCAGTTCGAAATTATCAAATAAGGGAGATCTTCTTAAGGATGCTTCACGTTATAGAAGATTGGTTGGTAGGTTGATCTATCTCACCATCTCAAGGCCTGATATAACCTACTCTGTGCATGTATTGAGCAAGTTCATGCATGAGTCTTGCAAGCCTCATATGGAAGCAGCTTTACGAGTTGTTCGTTATCTCAAGAGCAATCCAGGTCAAGGTCTATTTTTCTCTTCACAAAATGATTTCAGACTTCGTGCTTTTTGTGATTCGGATTGGGCTGGTTGTCCCATGACCCGAAGATCTACTACAGGTTATTGTGTCTTTTTTGGTTCTTCACTAATTTCTTGGAGGTCAAAGAGACAAAAGACAGTTTCATTGTCTTCAGCTGAAGCAGAATATCGAGCAATGACAAGAGCTTGTTGTGAGTTAACTTGGTTAAAAAATCTTCTCAAAGATCTAAATATTCTTCATTCAAAACCTGCTTTGTTGTATTGTGACAATAGAGCAGCTTTGCATATTGCTGCCAATCCTGTTTTTCATGAAAGAACTAGACACATTGAGATGGATTGTCACTTCATCAGAGACAAGATTCAAGATGGGTCAGTTGTTACTAAGTTCGTCAGTTCTGGAAATCAGTTAGCTGATGTTTTTACCAAAGCATTAGGAAAGGAAGTTTTCATCCCTATGATTCGCAAGTTGGGAGTTCGAGATATTCACTCTCCAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_3 Retrotrans_gag

Protein Analysis

731

Amino Acids

81.94

Weight (kDa)

9.58

Isoelectric Point (pI)

53.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_2 PF07727 248 - 490 3.3e-71 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000071)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G23160 AT4G23160
fragaria_vesca FvH4_2g08111 FvH4_2g17332 FvH4_2g18071 FvH4_2g20531 FvH4_2g20842 FvH4_2g20842 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g24231 FvH4_2g24232 FvH4_3g00831 FvH4_3g00831 FvH4_3g03561 FvH4_3g03561 FvH4_3g10282 FvH4_3g18165 FvH4_3g19021 FvH4_3g24071 FvH4_3g33123 FvH4_3g33970 FvH4_3g38851 FvH4_3g39133 FvH4_3g39271 FvH4_4g00981 FvH4_4g08191 FvH4_4g08311 FvH4_4g08311 FvH4_4g08311 FvH4_4g09341 FvH4_4g12550 FvH4_4g12550 FvH4_4g12550 FvH4_4g13391 FvH4_4g14842 FvH4_4g27901 FvH4_5g11561 FvH4_5g15611 FvH4_5g17991 FvH4_5g27871 FvH4_5g29995 FvH4_5g39662 FvH4_6g02392 FvH4_6g12781 FvH4_6g20106 FvH4_6g20106 FvH4_6g20106 FvH4_6g30872 FvH4_6g34901 FvH4_6g35632 FvH4_6g36661 FvH4_6g43795 FvH4_6g44611 FvH4_7g01791 FvH4_7g04041 FvH4_7g12551 FvH4_7g23351
malus_domestica MD00G1134200.v1.1 MD01G1096500.v1.1 MD01G1128200.v1.1 MD02G1250500.v1.1 MD02G1294900.v1.1 MD03G1121800.v1.1 MD04G1021400.v1.1 MD04G1051100.v1.1 MD04G1051300.v1.1 MD04G1099000.v1.1 MD05G1047900.v1.1 MD05G1298000.v1.1 MD06G1064200.v1.1 MD06G1120600.v1.1 MD07G1013900.v1.1 MD09G1226900.v1.1 MD10G1196700.v1.1 MD10G1307000.v1.1 MD10G1338900.v1.1 MD11G1107300.v1.1 MD11G1138300.v1.1 MD11G1236700.v1.1 MD12G1032500.v1.1 MD12G1150100.v1.1 MD12G1247800.v1.1 MD17G1267900.v1.1
pyrus_communis pycom02g03660 pycom02g13370 pycom02g14840 pycom02g18400 pycom02g18880 pycom02g22740 pycom04g08800 pycom04g15770 pycom05g07980 pycom05g19640 pycom06g09360 pycom07g13160 pycom08g11820 pycom08g21740 pycom09g19980 pycom10g04810 pycom10g05420 pycom10g14650 pycom11g03140 pycom11g21550 pycom12g14740 pycom13g01600 pycom13g29510 pycom14g07060 pycom15g01990 pycom15g19850 pycom15g30860 pycom16g15290 pycom16g16250 pycom16g25390 pycom17g17270 pycom520g00070
rosa_chinensis RchiOBHm_Chr1g0316691 RchiOBHm_Chr1g0320751 RchiOBHm_Chr1g0320771 RchiOBHm_Chr1g0322231 RchiOBHm_Chr1g0322861 RchiOBHm_Chr1g0328471 RchiOBHm_Chr1g0333321 RchiOBHm_Chr1g0337871 RchiOBHm_Chr1g0339051 RchiOBHm_Chr1g0349861 RchiOBHm_Chr1g0361951 RchiOBHm_Chr1g0365931 RchiOBHm_Chr1g0365981 RchiOBHm_Chr1g0377711 RchiOBHm_Chr1g0381581 RchiOBHm_Chr1g0382741 RchiOBHm_Chr1g0383501 RchiOBHm_Chr2g0101201 RchiOBHm_Chr2g0113601 RchiOBHm_Chr2g0124031 RchiOBHm_Chr2g0135481 RchiOBHm_Chr2g0148361 RchiOBHm_Chr2g0150101 RchiOBHm_Chr2g0154181 RchiOBHm_Chr2g0156071 RchiOBHm_Chr2g0166521 RchiOBHm_Chr2g0166821 RchiOBHm_Chr3g0448011 RchiOBHm_Chr3g0450941 RchiOBHm_Chr3g0450961 RchiOBHm_Chr3g0451051 RchiOBHm_Chr3g0451721 RchiOBHm_Chr3g0453371 RchiOBHm_Chr3g0454881 RchiOBHm_Chr3g0457421 RchiOBHm_Chr3g0457661 RchiOBHm_Chr3g0460011 RchiOBHm_Chr3g0461531 RchiOBHm_Chr3g0461981 RchiOBHm_Chr3g0463471 RchiOBHm_Chr3g0466641 RchiOBHm_Chr3g0468181 RchiOBHm_Chr3g0483351 RchiOBHm_Chr4g0394001 RchiOBHm_Chr4g0397261 RchiOBHm_Chr4g0404531 RchiOBHm_Chr4g0410841 RchiOBHm_Chr4g0415501 RchiOBHm_Chr4g0425221 RchiOBHm_Chr4g0430811 RchiOBHm_Chr5g0010831 RchiOBHm_Chr5g0016831 RchiOBHm_Chr5g0016851 RchiOBHm_Chr5g0031351 RchiOBHm_Chr5g0032151 RchiOBHm_Chr5g0041201 RchiOBHm_Chr5g0042191 RchiOBHm_Chr5g0064121 RchiOBHm_Chr5g0066601 RchiOBHm_Chr5g0078371 RchiOBHm_Chr5g0079271 RchiOBHm_Chr6g0263751 RchiOBHm_Chr6g0285111 RchiOBHm_Chr6g0298961 RchiOBHm_Chr6g0300481 RchiOBHm_Chr6g0303211 RchiOBHm_Chr7g0192341 RchiOBHm_Chr7g0196171 RchiOBHm_Chr7g0200281 RchiOBHm_Chr7g0200551 RchiOBHm_Chr7g0207611 RchiOBHm_Chr7g0212421 RchiOBHm_Chr7g0214991 RchiOBHm_Chr7g0219211 RchiOBHm_Chr7g0242371
rosa_laevigata RLG00000002389 RLG00000007980
rosa_roxburghii Rroxscaffold_1G00053480 Rroxscaffold_2G00090890 Rroxscaffold_2G00099660 Rroxscaffold_2G00134510 Rroxscaffold_3G00221450 Rroxscaffold_3G00240550 Rroxscaffold_4G00305710 Rroxscaffold_4G00306360 Rroxscaffold_4G00306800 Rroxscaffold_4G00329090 Rroxscaffold_5G00382750 Rroxscaffold_5G00385900 Rroxscaffold_6G00403080 Rroxscaffold_7G00172890 Rroxscaffold_7G00186690
rosa_samantha Rh1DG425600
rosa_wichuraiana Rw0G001640 Rw0G009160 Rw0G010480 Rw0G010520 Rw0G013850 Rw0G017170 Rw0G018520 Rw0G019280 Rw0G022780 Rw1G000360 Rw1G001410 Rw1G001630 Rw1G002100 Rw1G006810 Rw1G010680 Rw1G012700 Rw1G016160 Rw1G022180 Rw1G023580 Rw1G025640 Rw1G026310 Rw1G027230 Rw1G028110 Rw1G034180 Rw2G004990 Rw2G005840 Rw2G007350 Rw2G024730 Rw2G025580 Rw2G026670 Rw2G027210 Rw2G029060 Rw2G031560 Rw2G042190 Rw2G043850 Rw2G045990 Rw2G046130 Rw2G049290 Rw2G049310 Rw2G049790 Rw2G052250 Rw3G004350 Rw3G013100 Rw3G015280 Rw3G015720 Rw3G024630 Rw3G026470 Rw3G027840 Rw3G028960 Rw3G029130 Rw3G029160 Rw4G000280 Rw4G006650 Rw4G008970 Rw4G009310 Rw4G011730 Rw4G012000 Rw4G012610 Rw4G014300 Rw4G014690 Rw4G015190 Rw4G016470 Rw4G020750 Rw4G025060 Rw4G025080 Rw5G005610 Rw5G010380 Rw5G013970 Rw5G015130 Rw5G015250 Rw5G017640 Rw5G019910 Rw5G022410 Rw5G023550 Rw5G029710 Rw5G037650 Rw5G038280 Rw5G038570 Rw5G041550 Rw5G042600 Rw5G043910 Rw5G047850 Rw5G048200 Rw5G049920 Rw6G000260 Rw6G000530 Rw6G001710 Rw6G005090 Rw6G006730 Rw6G009310 Rw6G010950 Rw6G011630 Rw6G012080 Rw6G012750 Rw6G015970 Rw6G020700 Rw6G024350 Rw7G008540 Rw7G016620 Rw7G019400 Rw7G020010 Rw7G024240 Rw7G025630 Rw7G027550 Rw7G027770 Rw7G027960 Rw7G028450 Rw7G031280 Rw7G031970 Rw7G032180 Rw7G033590 Rw7G033720 Rw7G033890 Rw7G041800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 624
Acc36I ACCTGC 2 cut(s) 1421, 1951
AccI GTMKAC 1 cut(s) 233
AciI CCGC 9 cut(s) 10, 16, 22, 143, 374, 377, 401, 440, 956
AclWI GGATC 3 cut(s) 41, 1265, 1335
AcsI RAATTY 3 cut(s) 1029, 1139, 1297
AcuI CTGAAG 2 cut(s) 1830, 1872
AcyI GRCGYC 1 cut(s) 473
AfaI GTAC 2 cut(s) 574, 845
AfiI CCNNNNNNNGG 6 cut(s) 110, 197, 1049, 1128, 1563, 1679
AflII CTTAAG 1 cut(s) 1505
AflIII ACRYGT 1 cut(s) 508
AgeI ACCGGT 1 cut(s) 769
AgsI TTSAA 3 cut(s) 61, 1938, 2057
AjnI CCWGG 3 cut(s) 550, 1048, 1672
Alw26I GTCTC 5 cut(s) 9, 98, 1044, 1816, 2040
AlwI GGATC 3 cut(s) 41, 1265, 1335
AlwNI CAGNNNCTG 1 cut(s) 557
AoxI GGCC 3 cut(s) 101, 316, 1565
ApeKI GCWGC 7 cut(s) 442, 683, 959, 1445, 1637, 1970, 1985
ApoI RAATTY 3 cut(s) 1029, 1139, 1297
ArsI GACNNNNNNTTYG 2 cut(s) 521, 553
AseI ATTAAT 1 cut(s) 1256
AsiGI ACCGGT 1 cut(s) 769
Asp700I GAANNNNTTC 1 cut(s) 1220
AspLEI GCGC 4 cut(s) 56, 625, 1401, 1473
AspS9I GGNCC 3 cut(s) 113, 554, 972
AsuC2I CCSGG 1 cut(s) 1123
AsuHPI GGTGA 7 cut(s) 64, 276, 751, 903, 1025, 1346, 1546
AsuII TTCGAA 1 cut(s) 1478
AvaII GGWCC 3 cut(s) 113, 554, 972
BaeI ACNNNNGTAYC 2 cut(s) 203, 236
BarI GAAGNNNNNNTAC 4 cut(s) 1626, 1658, 1753, 1785
BbsI GAAGAC 5 cut(s) 100, 248, 531, 1046, 1836
BbvI GCAGC 7 cut(s) 454, 670, 946, 1457, 1649, 1972, 1982
BccI CCATC 7 cut(s) 169, 334, 372, 399, 1565, 2020, 2054
BciT130I CCWGG 3 cut(s) 552, 1050, 1674
BciVI GTATCC 1 cut(s) 231
BclI TGATCA 1 cut(s) 226
BcnI CCSGG 1 cut(s) 1123
BcoDI GTCTC 5 cut(s) 9, 98, 1044, 1816, 2040
BfaI CTAG 1 cut(s) 2013
BfmI CTRYAG 1 cut(s) 1770
BfrI CTTAAG 1 cut(s) 1505
BfuAI ACCTGC 2 cut(s) 1421, 1951
BfuI GTATCC 1 cut(s) 231
BglII AGATCT 3 cut(s) 1498, 1763, 1918
Bme1390I CCNGG 4 cut(s) 552, 1050, 1123, 1674
Bme18I GGWCC 3 cut(s) 113, 554, 972
BmgT120I GGNCC 3 cut(s) 113, 554, 972
BmrFI CCNGG 4 cut(s) 552, 1050, 1123, 1674
BmsI GCATC 7 cut(s) 702, 826, 929, 1127, 1138, 1417, 1501
BpiI GAAGAC 5 cut(s) 100, 248, 531, 1046, 1836
BplI GAGNNNNNCTC 2 cut(s) 568, 600
BpmI CTGGAG 3 cut(s) 111, 318, 534
Bpu14I TTCGAA 1 cut(s) 1478
BpuEI CTTGAG 2 cut(s) 1546, 1646
BpuMI CCSGG 1 cut(s) 1123
Bsa29I ATCGAT 2 cut(s) 820, 891
BsaHI GRCGYC 1 cut(s) 473
BsaJI CCNNGG 2 cut(s) 864, 1179
BsaWI WCCGGW 2 cut(s) 769, 1273
BsaXI ACNNNNNCTCC 2 cut(s) 109, 139
Bsc4I CCNNNNNNNGG 6 cut(s) 110, 197, 1049, 1128, 1563, 1679
Bse118I RCCGGY 2 cut(s) 769, 1311
Bse1I ACTGG 4 cut(s) 291, 335, 657, 1267
Bse3DI GCAATG 2 cut(s) 1133, 1875
BseBI CCWGG 3 cut(s) 552, 1050, 1674
BseCI ATCGAT 2 cut(s) 820, 891
BseDI CCNNGG 2 cut(s) 864, 1179
BseLI CCNNNNNNNGG 6 cut(s) 110, 197, 1049, 1128, 1563, 1679
BseMI GCAATG 2 cut(s) 1133, 1875
BseMII CTCAG 4 cut(s) 183, 239, 656, 1409
BseNI ACTGG 4 cut(s) 291, 335, 657, 1267
BseRI GAGGAG 5 cut(s) 75, 174, 321, 1032, 1035
BseXI GCAGC 7 cut(s) 454, 670, 946, 1457, 1649, 1972, 1982
BsgI GTGCAG 1 cut(s) 669
Bsh1285I CGRYCG 1 cut(s) 202
BshFI GGCC 3 cut(s) 103, 318, 1567
BshTI ACCGGT 1 cut(s) 769
BshVI ATCGAT 2 cut(s) 820, 891
BsiEI CGRYCG 1 cut(s) 202
BsiSI CCGG 6 cut(s) 100, 315, 770, 1123, 1274, 1312
BslFI GGGAC 1 cut(s) 1734
BslI CCNNNNNNNGG 6 cut(s) 110, 197, 1049, 1128, 1563, 1679
BsmAI GTCTC 5 cut(s) 9, 98, 1044, 1816, 2040
BsmBI CGTCTC 1 cut(s) 98
BsmFI GGGAC 1 cut(s) 1734
BsnI GGCC 3 cut(s) 103, 318, 1567
Bsp119I TTCGAA 1 cut(s) 1478
BspACI CCGC 9 cut(s) 10, 16, 22, 143, 374, 377, 401, 440, 956
BspANI GGCC 3 cut(s) 103, 318, 1567
BspCNI CTCAG 4 cut(s) 182, 240, 655, 1408
BspDI ATCGAT 2 cut(s) 820, 891
BspHI TCATGA 2 cut(s) 898, 2002
BspMI ACCTGC 2 cut(s) 1421, 1951
BspPI GGATC 3 cut(s) 41, 1265, 1335
BspT104I TTCGAA 1 cut(s) 1478
BspTI CTTAAG 1 cut(s) 1505
BsrDI GCAATG 2 cut(s) 1133, 1875
BsrFI RCCGGY 2 cut(s) 769, 1311
BsrI ACTGG 4 cut(s) 291, 335, 657, 1267
BssAI RCCGGY 2 cut(s) 769, 1311
BssECI CCNNGG 2 cut(s) 864, 1179
BssNI GRCGYC 1 cut(s) 473
BssT1I CCWWGG 2 cut(s) 864, 1179
Bst2UI CCWGG 3 cut(s) 552, 1050, 1674
Bst4CI ACNGT 3 cut(s) 288, 830, 1834
Bst6I CTCTTC 3 cut(s) 93, 101, 1699
BstACI GRCGYC 1 cut(s) 473
BstAFI CTTAAG 1 cut(s) 1505
BstBI TTCGAA 1 cut(s) 1478
BstC8I GCNNGC 4 cut(s) 627, 729, 1165, 1622
BstDEI CTNAG 5 cut(s) 169, 248, 642, 1395, 2076
BstHHI GCGC 4 cut(s) 56, 625, 1401, 1473
BstMAI GTCTC 5 cut(s) 9, 98, 1044, 1816, 2040
BstMCI CGRYCG 1 cut(s) 202
BstMWI GCNNNNNNNGC 6 cut(s) 15, 179, 439, 472, 683, 1286
BstNI CCWGG 3 cut(s) 552, 1050, 1674
BstNSI RCATGY 3 cut(s) 512, 629, 1592
BstSCI CCNGG 4 cut(s) 550, 1048, 1121, 1672
BstSFI CTRYAG 1 cut(s) 1770
BstV1I GCAGC 7 cut(s) 454, 670, 946, 1457, 1649, 1972, 1982
BstV2I GAAGAC 5 cut(s) 100, 248, 531, 1046, 1836
BstX2I RGATCY 4 cut(s) 1327, 1498, 1763, 1918
BstYI RGATCY 4 cut(s) 1327, 1498, 1763, 1918
Bsu15I ATCGAT 2 cut(s) 820, 891
BsuI GTATCC 1 cut(s) 231
BsuRI GGCC 3 cut(s) 103, 318, 1567
BsuTUI ATCGAT 2 cut(s) 820, 891
BtgZI GCGATG 1 cut(s) 725
BtsI GCAGTG 1 cut(s) 915
BtsIMutI CAGTG 3 cut(s) 664, 915, 1429
BveI ACCTGC 2 cut(s) 1421, 1951
Cac8I GCNNGC 4 cut(s) 627, 729, 1165, 1622
CaiI CAGNNNCTG 1 cut(s) 557
CciI TCATGA 2 cut(s) 898, 2002
CfoI GCGC 4 cut(s) 56, 625, 1401, 1473
Cfr10I RCCGGY 2 cut(s) 769, 1311
Cfr13I GGNCC 3 cut(s) 113, 554, 972
ClaI ATCGAT 2 cut(s) 820, 891
CpoI CGGWCCG 1 cut(s) 113
CseI GACGC 1 cut(s) 481
Csp6I GTAC 2 cut(s) 573, 844
CspAI ACCGGT 1 cut(s) 769
CspI CGGWCCG 1 cut(s) 113
CviQI GTAC 2 cut(s) 573, 844
DdeI CTNAG 5 cut(s) 169, 248, 642, 1395, 2076
DraI TTTAAA 3 cut(s) 1110, 1293, 1341
Eam1104I CTCTTC 3 cut(s) 93, 101, 1699
EarI CTCTTC 3 cut(s) 93, 101, 1699
EciI GGCGGA 3 cut(s) 5, 11, 390
Eco130I CCWWGG 2 cut(s) 864, 1179
Eco147I AGGCCT 1 cut(s) 1567
Eco32I GATATC 2 cut(s) 581, 648
Eco47I GGWCC 3 cut(s) 113, 554, 972
Eco57I CTGAAG 2 cut(s) 1830, 1872
EcoO109I RGGNCCY 1 cut(s) 554
EcoRII CCWGG 3 cut(s) 550, 1048, 1672
EcoRV GATATC 2 cut(s) 581, 648
EcoT14I CCWWGG 2 cut(s) 864, 1179
EcoT22I ATGCAT 2 cut(s) 1411, 1611
ErhI CCWWGG 2 cut(s) 864, 1179
Esp3I CGTCTC 1 cut(s) 98
FaqI GGGAC 1 cut(s) 1734
FauI CCCGC 2 cut(s) 381, 447
FauNDI CATATG 1 cut(s) 1629
FbaI TGATCA 1 cut(s) 226
FblI GTMKAC 1 cut(s) 233
FspBI CTAG 1 cut(s) 2013
FspI TGCGCA 1 cut(s) 624
GlaI GCGC 4 cut(s) 55, 624, 1400, 1472
GsuI CTGGAG 3 cut(s) 111, 318, 534
HaeIII GGCC 3 cut(s) 103, 318, 1567
HapII CCGG 6 cut(s) 100, 315, 770, 1123, 1274, 1312
HgaI GACGC 1 cut(s) 481
HhaI GCGC 4 cut(s) 56, 625, 1401, 1473
Hin1I GRCGYC 1 cut(s) 473
Hin6I GCGC 4 cut(s) 54, 623, 1399, 1471
HinP1I GCGC 4 cut(s) 54, 623, 1399, 1471
HincII GTYRAC 2 cut(s) 234, 1893
HindII GTYRAC 2 cut(s) 234, 1893
HpaI GTTAAC 1 cut(s) 1893
HpaII CCGG 6 cut(s) 100, 315, 770, 1123, 1274, 1312
HphI GGTGA 7 cut(s) 64, 276, 751, 903, 1025, 1346, 1546
Hpy166II GTNNAC 5 cut(s) 234, 506, 662, 805, 1893
Hpy8I GTNNAC 5 cut(s) 234, 506, 662, 805, 1893
Hpy99I CGWCG 3 cut(s) 47, 456, 475
HpyAV CCTTC 4 cut(s) 67, 165, 486, 878
HpyCH4III ACNGT 3 cut(s) 288, 830, 1834
HpyCH4IV ACGT 1 cut(s) 1519
HpyCH4V TGCA 9 cut(s) 591, 686, 727, 1409, 1430, 1588, 1609, 1620, 1978
HpyF10VI GCNNNNNNNGC 6 cut(s) 15, 179, 439, 472, 683, 1286
HpyF3I CTNAG 5 cut(s) 169, 248, 642, 1395, 2076
HpySE526I ACGT 1 cut(s) 1519
Hsp92I GRCGYC 1 cut(s) 473
HspAI GCGC 4 cut(s) 54, 623, 1399, 1471
Ksp22I TGATCA 1 cut(s) 226
KspAI GTTAAC 1 cut(s) 1893
LmnI GCTCC 5 cut(s) 178, 187, 1069, 1442, 1468
Lsp1109I GCAGC 7 cut(s) 454, 670, 946, 1457, 1649, 1972, 1982
LweI GCATC 7 cut(s) 702, 826, 929, 1127, 1138, 1417, 1501
MaeI CTAG 1 cut(s) 2013
MaeII ACGT 1 cut(s) 1519
MaeIII GTNAC 5 cut(s) 486, 511, 1958, 2033, 2071
MflI RGATCY 4 cut(s) 1327, 1498, 1763, 1918
MlyI GAGTC 5 cut(s) 76, 259, 748, 775, 1622
MmeI TCCRAC 4 cut(s) 140, 320, 364, 966
Mph1103I ATGCAT 2 cut(s) 1411, 1611
MroXI GAANNNNTTC 1 cut(s) 1220
MslI CAYNNNNRTG 4 cut(s) 657, 878, 2024, 2147
MspA1I CMGCKG 2 cut(s) 1163, 1850
MspCI CTTAAG 1 cut(s) 1505
MspI CCGG 6 cut(s) 100, 315, 770, 1123, 1274, 1312
MspR9I CCNGG 4 cut(s) 552, 1050, 1123, 1674
MvaI CCWGG 3 cut(s) 552, 1050, 1674
MwoI GCNNNNNNNGC 6 cut(s) 15, 179, 439, 472, 683, 1286
NciI CCSGG 1 cut(s) 1123
NdeI CATATG 1 cut(s) 1629
NmeAIII GCCGAG 1 cut(s) 442
NmuCI GTSAC 3 cut(s) 511, 1958, 2033
NsbI TGCGCA 1 cut(s) 624
NsiI ATGCAT 2 cut(s) 1411, 1611
NspI RCATGY 3 cut(s) 512, 629, 1592
NspV TTCGAA 1 cut(s) 1478
PaeI GCATGC 1 cut(s) 629
PagI TCATGA 2 cut(s) 898, 2002
PceI AGGCCT 1 cut(s) 1567
PciI ACATGT 1 cut(s) 508
PcsI WCGNNNNNNNCGW 1 cut(s) 1651
PdmI GAANNNNTTC 1 cut(s) 1220
PfeI GAWTC 5 cut(s) 870, 1383, 1730, 2053, 2152
PinAI ACCGGT 1 cut(s) 769
PleI GAGTC 5 cut(s) 76, 258, 748, 775, 1621
PpsI GAGTC 5 cut(s) 76, 258, 748, 775, 1621
PpuMI RGGWCCY 1 cut(s) 554
PscI ACATGT 1 cut(s) 508
PshBI ATTAAT 1 cut(s) 1256
Psp5II RGGWCCY 1 cut(s) 554
Psp6I CCWGG 3 cut(s) 550, 1048, 1672
PspGI CCWGG 3 cut(s) 550, 1048, 1672
PspPI GGNCC 3 cut(s) 113, 554, 972
PspPPI RGGWCCY 1 cut(s) 554
PstNI CAGNNNCTG 1 cut(s) 557
PsuI RGATCY 4 cut(s) 1327, 1498, 1763, 1918
PvuII CAGCTG 2 cut(s) 1163, 1850
RsaI GTAC 2 cut(s) 574, 845
RsaNI GTAC 2 cut(s) 573, 844
RseI CAYNNNNRTG 4 cut(s) 657, 878, 2024, 2147
Rsr2I CGGWCCG 1 cut(s) 113
RsrII CGGWCCG 1 cut(s) 113
SalI GTCGAC 1 cut(s) 232
Sau96I GGNCC 3 cut(s) 113, 554, 972
SchI GAGTC 5 cut(s) 76, 259, 748, 775, 1622
ScrFI CCNGG 4 cut(s) 552, 1050, 1123, 1674
SfaNI GCATC 7 cut(s) 702, 826, 929, 1127, 1138, 1417, 1501
SfcI CTRYAG 1 cut(s) 1770
SfuI TTCGAA 1 cut(s) 1478
SinI GGWCC 3 cut(s) 113, 554, 972
SmiMI CAYNNNNRTG 4 cut(s) 657, 878, 2024, 2147
SmlI CTYRAG 3 cut(s) 1505, 1561, 1661
SmoI CTYRAG 3 cut(s) 1505, 1561, 1661
SphI GCATGC 1 cut(s) 629
SseBI AGGCCT 1 cut(s) 1567
SsiI CCGC 9 cut(s) 10, 16, 22, 143, 374, 377, 401, 440, 956
SspI AATATT 1 cut(s) 1927
SspMI CTAG 1 cut(s) 2013
StuI AGGCCT 1 cut(s) 1567
StyD4I CCNGG 4 cut(s) 550, 1048, 1121, 1672
StyI CCWWGG 2 cut(s) 864, 1179
TaaI ACNGT 3 cut(s) 288, 830, 1834
TaiI ACGT 1 cut(s) 1522
TaqII GACCGA 2 cut(s) 101, 188
TauI GCSGC 3 cut(s) 12, 379, 959
TfiI GAWTC 5 cut(s) 870, 1383, 1730, 2053, 2152
TscAI CASTG 3 cut(s) 664, 922, 1429
TseFI GTSAC 3 cut(s) 511, 1958, 2033
TseI GCWGC 7 cut(s) 442, 683, 959, 1445, 1637, 1970, 1985
Tsp45I GTSAC 3 cut(s) 511, 1958, 2033
TspGWI ACGGA 2 cut(s) 440, 469
TspRI CASTG 3 cut(s) 664, 922, 1429
Vha464I CTTAAG 1 cut(s) 1505
VpaK11BI GGWCC 3 cut(s) 113, 554, 972
VspI ATTAAT 1 cut(s) 1256
XapI RAATTY 3 cut(s) 1029, 1139, 1297
XceI RCATGY 3 cut(s) 512, 629, 1592
XcmI CCANNNNNNNNNTGG 1 cut(s) 982
XmiI GTMKAC 1 cut(s) 233
XmnI GAANNNNTTC 1 cut(s) 1220
XspI CTAG 1 cut(s) 2013
Zsp2I ATGCAT 2 cut(s) 1411, 1611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.