Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000071

Physical Location & Seq

Genomic Coordinates Forward (+)

10831383 .. 10835025

Gene Structure 3643 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ17191

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2934 bp

ATGAAAATGGAAGCACAACTGCTATGCTTGGAAAGTTTGCTGGTTTTTTGGCGAAATCAAACATGGCTTCTTCAGAGGATATACCAGGATCGAGTGTCCAAGGAGAAGATTGGTGAAGGGTTCTTTCTAAATGGTTTGTACTACATATCAACTTCATCAAGCTTTTCAAAGTGTTTTCTGACAGAGTCCAAATCTGCAATACAGCAACAATTGTGGCATAAACGCCTAGCCCATCCTTCCTTTAATGTTTTGTCAATGTTATTCCCTAGTTTTTGTAAAGTCTCCCATAAGTGTGAGACATGTCATATGTCAAAATTTACTAGATTGCCTTTTCAAATCTCGCAATCCAGAGCAACTCAGCCTTTTGAAATTATACATTCTGATGTTTGGGGACCAGCATCCCTAGAATCATTTGATGGCTATAGGTTTTATGTCACCTTTATTGATGATTTTACTCGAACCACTTTTGTGTATCTTTTGAAATTCAAGAGTGAAGTCTTCAAGTGTTTCCAAGATTTTCATAACCTTGTCACAAATCATTTTTCATCAAAAATTTGCATTTTAAGGTCAGACAATGGCACTGAATACACATCCAAAATCATGACTGATTATCTTAGTGCTCAAGGGATTATTCATCAAACCAGCTGTGTGGGAACACCACAACAAAATGGTATTGCAGAACGTAAAAATAGAGATTTACTTGAGAAGGCTAGGGCCTTAATGCTTCAAACAAATGTTCCAAAAAAATTCTGGTCTCAAGGAATTCAAACTGCAGCTTACATCATCAACAGATTGCCTAGCAGTGTGTTAAATTTCAAATCTCCTTTTGAAGTCCTAAAAGGTCGAAAAGTTGACATTACACACCTTCGAGTATTTGGCTGTACGTGTTTTGTACATGTTCAGTCTAATCACCGAGATAAGTTTGATCCAAGAGCTGTCAAATGTGTGTTCCTCGGGTACTCATCTACCCAAAAGGGATACAAGTGTTACAATTCACAGACCAGAAAATTGTTTGTTTCAAGGGATGTTCATTTTGATGAATCTAACTCTTTCTTTCAGTTATCTGACAATGAACCTCAGGGGGAGCATATTTGTGACTTGTTTCCCACTCCAATTCCTGTTGAAGCTGCAATAGGCACTCCTAGTTCACCACAACTAGTTCAACAATTTTCAAACACTGAAGAGGTGCCGACAGAGTCCAACACTCAAGATGATCAACAAGCAGTTGTACCAAATACATCTCAACCTCGAAGAAACCCACCAAGGATGAGACATCCACCACCAAGACTTCAAGACTATGAGACTTACACAACACGTTATCCTCTTGCACAAGTTGCTCATTCCATAAATACCTCCTCTTCTCATAGTGCTTTCCTCATCAAGATTTCCAAAGAAACTGAACCAAGGAATTTTGAAGAAGCAAATCAGTCACCCGTTTGGAAGAAAGCTATGCACGATGAACTCAAAGCCCTTGATGACAACAGAACTTGGAGTATAGTCAAACTTCCCAAAGGCCAGAAAATTGTAGGGGCAAAATGGATTTACAAAATCAAGTTCAACTCCGATGGTTCAATTGAGCGGCACAAGGCAAGGTTAGTTGCTCGTGGGTTCACTCAAACCTTTGGTGTTGATTATAAAGAGACTTTTGCTCCAGTTGCTAAAATGAACTCAGTTCGAGTTTTGTTATCTGTTGCTATAAATTGTGGCTGGTCTCTATACCAAATGGACGTCAAGAATGCATTCTTGCATGGAGATCTAGAAGAAGATGTGTATATGCGATTACCTCCTGGTCACCCACGTGAAGGCGAAGCTGGAATGGTGTGTAAACTTCATAAGGCCTTATATGGTTTGAAACAATCCCCACGTGCTTGGTATTCCAAACTGAGTTCGGTCCTTCTTGCTTCAAGCTTTAAGCGAAGTCATGCAGACTCCTCCTTATTTGTTAGACATGGCAAGGCTGGCACGTTGGTTGTTCTAGTATATGTGGATGACTTAATTATCACTGGAGATAATGTGGATGAGATTAAGTCTCTCAAGTTAGCCTTGCACAACACCTTTGCCATCAAGGATCTTGGACCATTGAAGTACTTTCTGGGAATTGAAATGGATCACTCCTCGAATGGTATGTTCTTAAATCAACGTAAATATGTTGTTGATCTTCTTGATGAGGCAGGAATGAAGGAGAGTAAGCCTGCACGCACTCCTCTTAGTAGCAGACTGAAAATAGATGTTGAAGGAGAGCCTCTCTCGGATATTTGTGTTTATCAACGTCTTGTGGGTAAGCTCATCTATCTCACCATTACAAGACCAGATATCACTTACGCTGTGAGTTTGGTTAGTCAATTCATGCACTCTCCTACAACTCATCATCTACAAATTGTCAAAAGGATTCTTCGCTACTTAAAGGGCACAGTTGATCGAGGAATCATTATGAAGAACAATGGTCACTTCAACCTTGTGGGATACTCAGACTCTGACTGGGCAGGCAATTCCATTGATCGAAAGTCTACAACTGGGTACTGTACCTTCATTGGAGGCAATCTAGTTACCTGGAAAAGTAAGAAACAAACGGTGGTTGCTCGTTCTAGTGCAGAAGCTGAGTATCGTGCAATGGCATCCATAGCTTGTGAACTCATATGGTTAAAGACATTGTTGGGTGACTTAGGCATTATATGCCCTACACCCATAACTCTACATTGTGACAACCAGGCTGCCATGCATATTGCAGCCAATCCTGTCTTCCATGAACGCACCAAACATATTGAAGTAGATTGTCACTTTGTTCGAGATCAAGTTCAGTCTAAGCTTATTGAAACAGTATACACACGATCATGCGATCAACTAGCAGATATTTTTACGAAGATTCTCGCTTCCGCTCAGTTTGAACGTCTGCTTTCCAAGCTTGGCTCAAGGGACTTCCCTGATCCAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002009 GO:0002165 GO:0003002 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007154 GO:0007165 GO:0007166 GO:0007219 GO:0007275 GO:0007389 GO:0007444 GO:0007447 GO:0007450 GO:0007472 GO:0007476 GO:0007552 GO:0007560 GO:0008150 GO:0008587 GO:0009653 GO:0009791 GO:0009886 GO:0009887 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009953 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0035107 GO:0035114 GO:0035120 GO:0035220 GO:0035222 GO:0035239 GO:0035295 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0048190 GO:0048513 GO:0048518 GO:0048522 GO:0048563 GO:0048569 GO:0048707 GO:0048729 GO:0048731 GO:0048736 GO:0048737 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0060429 GO:0060562 GO:0065007 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_34 Helicase_C_4 PHD

Protein Analysis

977

Amino Acids

111.19

Weight (kDa)

9.09

Isoelectric Point (pI)

38.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
gag_pre-integrs	PF13976	45 - 105	7.6e-09	GAG-pre-integrase domain
rve	PF00665	119 - 220	2.3e-09	Integrase core domain
SH3_retrovirus	PF25597	294 - 356	7.1e-28	Retroviral polymerase SH3-like domain
RVT_2	PF07727	494 - 736	1.2e-77	Reverse transcriptase (RNA-dependent DNA polymerase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G23160 AT4G23160
fragaria_vesca	FvH4_2g08111 FvH4_2g17332 FvH4_2g18071 FvH4_2g20531 FvH4_2g20842 FvH4_2g20842 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g24231 FvH4_2g24232 FvH4_3g00831 FvH4_3g00831 FvH4_3g03561 FvH4_3g03561 FvH4_3g10282 FvH4_3g18165 FvH4_3g19021 FvH4_3g24071 FvH4_3g33123 FvH4_3g33970 FvH4_3g38851 FvH4_3g39133 FvH4_3g39271 FvH4_4g00981 FvH4_4g08191 FvH4_4g08311 FvH4_4g08311 FvH4_4g08311 FvH4_4g09341 FvH4_4g12550 FvH4_4g12550 FvH4_4g12550 FvH4_4g13391 FvH4_4g14842 FvH4_4g27901 FvH4_5g11561 FvH4_5g15611 FvH4_5g17991 FvH4_5g27871 FvH4_5g29995 FvH4_5g39662 FvH4_6g02392 FvH4_6g12781 FvH4_6g20106 FvH4_6g20106 FvH4_6g20106 FvH4_6g30872 FvH4_6g34901 FvH4_6g35632 FvH4_6g36661 FvH4_6g43795 FvH4_6g44611 FvH4_7g01791 FvH4_7g04041 FvH4_7g12551 FvH4_7g23351
malus_domestica	MD00G1134200.v1.1 MD01G1096500.v1.1 MD01G1128200.v1.1 MD02G1250500.v1.1 MD02G1294900.v1.1 MD03G1121800.v1.1 MD04G1021400.v1.1 MD04G1051100.v1.1 MD04G1051300.v1.1 MD04G1099000.v1.1 MD05G1047900.v1.1 MD05G1298000.v1.1 MD06G1064200.v1.1 MD06G1120600.v1.1 MD07G1013900.v1.1 MD09G1226900.v1.1 MD10G1196700.v1.1 MD10G1307000.v1.1 MD10G1338900.v1.1 MD11G1107300.v1.1 MD11G1138300.v1.1 MD11G1236700.v1.1 MD12G1032500.v1.1 MD12G1150100.v1.1 MD12G1247800.v1.1 MD17G1267900.v1.1
pyrus_communis	pycom02g03660 pycom02g13370 pycom02g14840 pycom02g18400 pycom02g18880 pycom02g22740 pycom04g08800 pycom04g15770 pycom05g07980 pycom05g19640 pycom06g09360 pycom07g13160 pycom08g11820 pycom08g21740 pycom09g19980 pycom10g04810 pycom10g05420 pycom10g14650 pycom11g03140 pycom11g21550 pycom12g14740 pycom13g01600 pycom13g29510 pycom14g07060 pycom15g01990 pycom15g19850 pycom15g30860 pycom16g15290 pycom16g16250 pycom16g25390 pycom17g17270 pycom520g00070
rosa_chinensis	RchiOBHm_Chr1g0316691 RchiOBHm_Chr1g0320751 RchiOBHm_Chr1g0320771 RchiOBHm_Chr1g0322231 RchiOBHm_Chr1g0322861 RchiOBHm_Chr1g0328471 RchiOBHm_Chr1g0333321 RchiOBHm_Chr1g0337871 RchiOBHm_Chr1g0339051 RchiOBHm_Chr1g0349861 RchiOBHm_Chr1g0361951 RchiOBHm_Chr1g0365931 RchiOBHm_Chr1g0365981 RchiOBHm_Chr1g0377711 RchiOBHm_Chr1g0381581 RchiOBHm_Chr1g0382741 RchiOBHm_Chr1g0383501 RchiOBHm_Chr2g0101201 RchiOBHm_Chr2g0113601 RchiOBHm_Chr2g0124031 RchiOBHm_Chr2g0135481 RchiOBHm_Chr2g0148361 RchiOBHm_Chr2g0150101 RchiOBHm_Chr2g0154181 RchiOBHm_Chr2g0156071 RchiOBHm_Chr2g0166521 RchiOBHm_Chr2g0166821 RchiOBHm_Chr3g0448011 RchiOBHm_Chr3g0450941 RchiOBHm_Chr3g0450961 RchiOBHm_Chr3g0451051 RchiOBHm_Chr3g0451721 RchiOBHm_Chr3g0453371 RchiOBHm_Chr3g0454881 RchiOBHm_Chr3g0457421 RchiOBHm_Chr3g0457661 RchiOBHm_Chr3g0460011 RchiOBHm_Chr3g0461531 RchiOBHm_Chr3g0461981 RchiOBHm_Chr3g0463471 RchiOBHm_Chr3g0466641 RchiOBHm_Chr3g0468181 RchiOBHm_Chr3g0483351 RchiOBHm_Chr4g0394001 RchiOBHm_Chr4g0397261 RchiOBHm_Chr4g0404531 RchiOBHm_Chr4g0410841 RchiOBHm_Chr4g0415501 RchiOBHm_Chr4g0425221 RchiOBHm_Chr4g0430811 RchiOBHm_Chr5g0010831 RchiOBHm_Chr5g0016831 RchiOBHm_Chr5g0016851 RchiOBHm_Chr5g0031351 RchiOBHm_Chr5g0032151 RchiOBHm_Chr5g0041201 RchiOBHm_Chr5g0042191 RchiOBHm_Chr5g0064121 RchiOBHm_Chr5g0066601 RchiOBHm_Chr5g0078371 RchiOBHm_Chr5g0079271 RchiOBHm_Chr6g0263751 RchiOBHm_Chr6g0285111 RchiOBHm_Chr6g0298961 RchiOBHm_Chr6g0300481 RchiOBHm_Chr6g0303211 RchiOBHm_Chr7g0192341 RchiOBHm_Chr7g0196171 RchiOBHm_Chr7g0200281 RchiOBHm_Chr7g0200551 RchiOBHm_Chr7g0207611 RchiOBHm_Chr7g0212421 RchiOBHm_Chr7g0214991 RchiOBHm_Chr7g0219211 RchiOBHm_Chr7g0242371
rosa_laevigata	RLG00000002389 RLG00000007980
rosa_roxburghii	Rroxscaffold_1G00053480 Rroxscaffold_2G00090890 Rroxscaffold_2G00099660 Rroxscaffold_2G00134510 Rroxscaffold_3G00221450 Rroxscaffold_3G00240550 Rroxscaffold_4G00305710 Rroxscaffold_4G00306360 Rroxscaffold_4G00306800 Rroxscaffold_4G00329090 Rroxscaffold_5G00382750 Rroxscaffold_5G00385900 Rroxscaffold_6G00403080 Rroxscaffold_7G00172890 Rroxscaffold_7G00186690
rosa_samantha	Rh1DG425600
rosa_wichuraiana	Rw0G001640 Rw0G009160 Rw0G010480 Rw0G010520 Rw0G013850 Rw0G017170 Rw0G018520 Rw0G019280 Rw0G022780 Rw1G000360 Rw1G001410 Rw1G001630 Rw1G002100 Rw1G006810 Rw1G010680 Rw1G012700 Rw1G016160 Rw1G022180 Rw1G023580 Rw1G025640 Rw1G026310 Rw1G027230 Rw1G028110 Rw1G034180 Rw2G004990 Rw2G005840 Rw2G007350 Rw2G024730 Rw2G025580 Rw2G026670 Rw2G027210 Rw2G029060 Rw2G031560 Rw2G042190 Rw2G043850 Rw2G045990 Rw2G046130 Rw2G049290 Rw2G049310 Rw2G049790 Rw2G052250 Rw3G004350 Rw3G013100 Rw3G015280 Rw3G015720 Rw3G024630 Rw3G026470 Rw3G027840 Rw3G028960 Rw3G029130 Rw3G029160 Rw4G000280 Rw4G006650 Rw4G008970 Rw4G009310 Rw4G011730 Rw4G012000 Rw4G012610 Rw4G014300 Rw4G014690 Rw4G015190 Rw4G016470 Rw4G020750 Rw4G025060 Rw4G025080 Rw5G005610 Rw5G010380 Rw5G013970 Rw5G015130 Rw5G015250 Rw5G017640 Rw5G019910 Rw5G022410 Rw5G023550 Rw5G029710 Rw5G037650 Rw5G038280 Rw5G038570 Rw5G041550 Rw5G042600 Rw5G043910 Rw5G047850 Rw5G048200 Rw5G049920 Rw6G000260 Rw6G000530 Rw6G001710 Rw6G005090 Rw6G006730 Rw6G009310 Rw6G010950 Rw6G011630 Rw6G012080 Rw6G012750 Rw6G015970 Rw6G020700 Rw6G024350 Rw7G008540 Rw7G016620 Rw7G019400 Rw7G020010 Rw7G024240 Rw7G025630 Rw7G027550 Rw7G027770 Rw7G027960 Rw7G028450 Rw7G031280 Rw7G031970 Rw7G032180 Rw7G033590 Rw7G033720 Rw7G033890 Rw7G041800

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1635
AatII	GACGTC	1 cut(s)	1731
AccB1I	GGYRCC	1 cut(s)	1186
AccBSI	CCGCTC	2 cut(s)	1579, 2876
AccI	GTMKAC	2 cut(s)	2507, 2820
AciI	CCGC	2 cut(s)	1579, 2874
AclWI	GGATC	5 cut(s)	96, 920, 2076, 2115, 2918
AcsI	RAATTY	7 cut(s)	314, 482, 552, 746, 762, 811, 1408
AcuI	CTGAAG	2 cut(s)	56, 1200
AcvI	CACGTG	2 cut(s)	1799, 1865
AcyI	GRCGYC	1 cut(s)	1728
AfaI	GTAC	8 cut(s)	140, 883, 894, 959, 1230, 2087, 2519, 2524
AfiI	CCNNNNNNNGG	1 cut(s)	1802
AflIII	ACRYGT	4 cut(s)	299, 884, 895, 1313
AhlI	ACTAGT	1 cut(s)	1156
AjnI	CCWGG	4 cut(s)	84, 1786, 2549, 2706
AjuI	GAANNNNNNNTTGG	2 cut(s)	2723, 2755
AleI	CACNNNNGTG	2 cut(s)	467, 1797
Alw21I	GWGCWC	1 cut(s)	622
Alw26I	GTCTC	8 cut(s)	286, 290, 759, 1264, 1295, 1634, 1716, 2034
AlwI	GGATC	5 cut(s)	96, 920, 2076, 2115, 2918
AlwNI	CAGNNNCTG	2 cut(s)	2474, 2597
Ama87I	CYCGRG	1 cut(s)	953
AoxI	GGCC	3 cut(s)	714, 1513, 1836
ApeKI	GCWGC	4 cut(s)	773, 1127, 2711, 2726
ApoI	RAATTY	7 cut(s)	314, 482, 552, 746, 762, 811, 1408
Asp700I	GAANNNNTTC	1 cut(s)	1739
AspS9I	GGNCC	4 cut(s)	392, 714, 1891, 2075
AsuHPI	GGTGA	8 cut(s)	125, 427, 902, 1140, 1422, 1784, 2287, 2669
AvaI	CYCGRG	1 cut(s)	953
AvaII	GGWCC	3 cut(s)	392, 1891, 2075
AxyI	CCTNAGG	1 cut(s)	1077
BaeGI	GKGCMC	1 cut(s)	2411
BaeI	ACNNNNGTAYC	2 cut(s)	970, 1003
BanI	GGYRCC	1 cut(s)	1186
BarI	GAAGNNNNNNTAC	2 cut(s)	2510, 2542
BauI	CACGAG	1 cut(s)	1602
BbrPI	CACGTG	2 cut(s)	1799, 1865
BbsI	GAAGAC	2 cut(s)	490, 2731
Bbv12I	GWGCWC	1 cut(s)	622
BbvI	GCAGC	4 cut(s)	785, 1114, 2698, 2738
BccI	CCATC	4 cut(s)	240, 410, 1559, 2069
BciT130I	CCWGG	4 cut(s)	86, 1788, 2551, 2708
BciVI	GTATCC	2 cut(s)	971, 2456
BclI	TGATCA	1 cut(s)	1213
BcoDI	GTCTC	8 cut(s)	286, 290, 759, 1264, 1295, 1634, 1716, 2034
BcuI	ACTAGT	1 cut(s)	1156
BfmI	CTRYAG	2 cut(s)	421, 771
BfuI	GTATCC	2 cut(s)	971, 2456
BglII	AGATCT	1 cut(s)	1753
BisI	GCNGC	5 cut(s)	774, 1128, 1580, 2712, 2727
BlsI	GCNGC	5 cut(s)	775, 1129, 1581, 2713, 2728
BmcAI	AGTACT	1 cut(s)	2087
Bme1390I	CCNGG	4 cut(s)	86, 1788, 2551, 2708
Bme18I	GGWCC	3 cut(s)	392, 1891, 2075
BmeT110I	CYCGRG	1 cut(s)	953
BmgT120I	GGNCC	4 cut(s)	392, 714, 1891, 2075
BmiI	GGNNCC	2 cut(s)	393, 1188
BmrFI	CCNGG	4 cut(s)	86, 1788, 2551, 2708
BmrI	ACTGGG	2 cut(s)	2488, 2523
BmsI	GCATC	2 cut(s)	407, 2624
BmuI	ACTGGG	2 cut(s)	2488, 2523
BpiI	GAAGAC	2 cut(s)	490, 2731
BplI	GAGNNNNNCTC	4 cut(s)	2229, 2261, 2231, 2263
BpmI	CTGGAG	2 cut(s)	1635, 2025
BpuEI	CTTGAG	6 cut(s)	606, 722, 741, 1191, 2018, 2893
BsaAI	YACGTR	3 cut(s)	885, 1799, 1865
BsaHI	GRCGYC	1 cut(s)	1728
BsaI	GGTCTC	2 cut(s)	759, 1716
BsaJI	CCNNGG	4 cut(s)	99, 952, 1262, 1403
BsaXI	ACNNNNNCTCC	4 cut(s)	1633, 1663, 1998, 2028
Bsc4I	CCNNNNNNNGG	1 cut(s)	1802
Bse1I	ACTGG	4 cut(s)	1652, 2008, 2483, 2518
Bse21I	CCTNAGG	1 cut(s)	1077
Bse3DI	GCAATG	1 cut(s)	2616
BseBI	CCWGG	4 cut(s)	86, 1788, 2551, 2708
BseDI	CCNNGG	4 cut(s)	99, 952, 1262, 1403
BseGI	GGATG	9 cut(s)	232, 398, 590, 1030, 1272, 1273, 1993, 2023, 2615
BseLI	CCNNNNNNNGG	1 cut(s)	1802
BseMI	GCAATG	1 cut(s)	2616
BseMII	CTCAG	7 cut(s)	371, 1091, 1683, 1874, 2481, 2589, 2891
BseNI	ACTGG	4 cut(s)	1652, 2008, 2483, 2518
BseRI	GAGGAG	4 cut(s)	1345, 1921, 2104, 2193
BseSI	GKGCMC	1 cut(s)	2411
BseXI	GCAGC	4 cut(s)	785, 1114, 2698, 2738
BsgI	GTGCAG	2 cut(s)	2178, 2610
BshFI	GGCC	3 cut(s)	716, 1515, 1838
BshNI	GGYRCC	1 cut(s)	1186
BsiHKAI	GWGCWC	1 cut(s)	622
BsiHKCI	CYCGRG	1 cut(s)	953
BslFI	GGGAC	2 cut(s)	405, 2927
BslI	CCNNNNNNNGG	1 cut(s)	1802
BsmAI	GTCTC	8 cut(s)	286, 290, 759, 1264, 1295, 1634, 1716, 2034
BsmFI	GGGAC	2 cut(s)	405, 2927
BsmI	GAATGC	2 cut(s)	1739, 1741
BsnI	GGCC	3 cut(s)	716, 1515, 1838
Bso31I	GGTCTC	2 cut(s)	759, 1716
BsoBI	CYCGRG	1 cut(s)	953
Bsp1286I	GDGCHC	2 cut(s)	622, 2411
Bsp1407I	TGTACA	1 cut(s)	892
BspACI	CCGC	2 cut(s)	1579, 2874
BspANI	GGCC	3 cut(s)	716, 1515, 1838
BspCNI	CTCAG	7 cut(s)	370, 1090, 1682, 1875, 2480, 2590, 2890
BspHI	TCATGA	1 cut(s)	600
BspLI	GGNNCC	2 cut(s)	393, 1188
BspMAI	CTGCAG	1 cut(s)	775
BspPI	GGATC	5 cut(s)	96, 920, 2076, 2115, 2918
BspT107I	GGYRCC	1 cut(s)	1186
BspTNI	GGTCTC	2 cut(s)	759, 1716
BsrBI	CCGCTC	2 cut(s)	1579, 2876
BsrDI	GCAATG	1 cut(s)	2616
BsrGI	TGTACA	1 cut(s)	892
BsrI	ACTGG	4 cut(s)	1652, 2008, 2483, 2518
BssECI	CCNNGG	4 cut(s)	99, 952, 1262, 1403
BssNAI	GTATAC	1 cut(s)	2821
BssNI	GRCGYC	1 cut(s)	1728
BssSI	CACGAG	1 cut(s)	1602
BssT1I	CCWWGG	3 cut(s)	99, 1262, 1403
Bst1107I	GTATAC	1 cut(s)	2821
Bst2BI	CACGAG	1 cut(s)	1602
Bst2UI	CCWGG	4 cut(s)	86, 1788, 2551, 2708
Bst4CI	ACNGT	4 cut(s)	2413, 2522, 2572, 2818
Bst6I	CTCTTC	2 cut(s)	1176, 1363
BstACI	GRCGYC	1 cut(s)	1728
BstAPI	GCANNNNNTGC	2 cut(s)	1334, 2673
BstAUI	TGTACA	1 cut(s)	892
BstBAI	YACGTR	3 cut(s)	885, 1799, 1865
BstC8I	GCNNGC	4 cut(s)	1960, 2193, 2197, 2485
BstEII	GGTNACC	1 cut(s)	1790
BstF5I	GGATG	9 cut(s)	232, 398, 590, 1030, 1272, 1273, 1993, 2023, 2615
BstMAI	GTCTC	8 cut(s)	286, 290, 759, 1264, 1295, 1634, 1716, 2034
BstMWI	GCNNNNNNNGC	6 cut(s)	1334, 1655, 1959, 2621, 2673, 2899
BstNI	CCWGG	4 cut(s)	86, 1788, 2551, 2708
BstNSI	RCATGY	2 cut(s)	303, 899
BstPI	GGTNACC	1 cut(s)	1790
BstSCI	CCNGG	4 cut(s)	84, 1786, 2549, 2706
BstSFI	CTRYAG	2 cut(s)	421, 771
BstSLI	GKGCMC	1 cut(s)	2411
BstV1I	GCAGC	4 cut(s)	785, 1114, 2698, 2738
BstV2I	GAAGAC	2 cut(s)	490, 2731
BstX2I	RGATCY	2 cut(s)	1753, 2068
BstXI	CCANNNNNNTGG	2 cut(s)	649, 1869
BstYI	RGATCY	2 cut(s)	1753, 2068
BstZ17I	GTATAC	1 cut(s)	2821
Bsu36I	CCTNAGG	1 cut(s)	1077
BsuI	GTATCC	2 cut(s)	971, 2456
BsuRI	GGCC	3 cut(s)	716, 1515, 1838
BtsCI	GGATG	9 cut(s)	232, 398, 590, 1030, 1272, 1273, 1993, 2023, 2615
BtsI	GCAGTG	1 cut(s)	808
BtsIMutI	CAGTG	4 cut(s)	579, 808, 1176, 2001
Cac8I	GCNNGC	4 cut(s)	1960, 2193, 2197, 2485
CaiI	CAGNNNCTG	2 cut(s)	2474, 2597
CciI	TCATGA	1 cut(s)	600
Cfr13I	GGNCC	4 cut(s)	392, 714, 1891, 2075
Csp6I	GTAC	8 cut(s)	139, 882, 893, 958, 1229, 2086, 2518, 2523
CspCI	CAANNNNNGTGG	2 cut(s)	194, 229
CviQI	GTAC	8 cut(s)	139, 882, 893, 958, 1229, 2086, 2518, 2523
Eam1104I	CTCTTC	2 cut(s)	1176, 1363
EarI	CTCTTC	2 cut(s)	1176, 1363
Eco130I	CCWWGG	3 cut(s)	99, 1262, 1403
Eco147I	AGGCCT	1 cut(s)	1838
Eco31I	GGTCTC	2 cut(s)	759, 1716
Eco32I	GATATC	1 cut(s)	2314
Eco47I	GGWCC	3 cut(s)	392, 1891, 2075
Eco57I	CTGAAG	2 cut(s)	56, 1200
Eco72I	CACGTG	2 cut(s)	1799, 1865
Eco81I	CCTNAGG	1 cut(s)	1077
Eco88I	CYCGRG	1 cut(s)	953
Eco91I	GGTNACC	1 cut(s)	1790
EcoO109I	RGGNCCY	1 cut(s)	714
EcoO65I	GGTNACC	1 cut(s)	1790
EcoRI	GAATTC	1 cut(s)	762
EcoRII	CCWGG	4 cut(s)	84, 1786, 2549, 2706
EcoRV	GATATC	1 cut(s)	2314
EcoT14I	CCWWGG	3 cut(s)	99, 1262, 1403
EcoT22I	ATGCAT	2 cut(s)	1741, 2721
ErhI	CCWWGG	3 cut(s)	99, 1262, 1403
FalI	AAGNNNNNCTT	2 cut(s)	2027, 2059
FaqI	GGGAC	2 cut(s)	405, 2927
FauNDI	CATATG	2 cut(s)	306, 2636
FbaI	TGATCA	1 cut(s)	1213
FblI	GTMKAC	2 cut(s)	2507, 2820
Fnu4HI	GCNGC	5 cut(s)	774, 1128, 1580, 2712, 2727
FokI	GGATG	9 cut(s)	219, 385, 577, 1037, 1260, 1279, 2000, 2030, 2602
Fsp4HI	GCNGC	5 cut(s)	774, 1128, 1580, 2712, 2727
GluI	GCNGC	5 cut(s)	774, 1128, 1580, 2712, 2727
GsuI	CTGGAG	2 cut(s)	1635, 2025
HaeIII	GGCC	3 cut(s)	716, 1515, 1838
Hin1I	GRCGYC	1 cut(s)	1728
HincII	GTYRAC	1 cut(s)	853
HindII	GTYRAC	1 cut(s)	853
HindIII	AAGCTT	4 cut(s)	160, 1906, 2804, 2900
HinfI	GANTC	9 cut(s)	185, 407, 1040, 1196, 1928, 2389, 2424, 2471, 2863
HphI	GGTGA	8 cut(s)	125, 427, 902, 1140, 1422, 1784, 2287, 2669
Hpy166II	GTNNAC	7 cut(s)	853, 1148, 1611, 1826, 2508, 2630, 2821
Hpy188I	TCNGA	9 cut(s)	75, 180, 382, 571, 1066, 1564, 2251, 2470, 2476
Hpy8I	GTNNAC	7 cut(s)	853, 1148, 1611, 1826, 2508, 2630, 2821
HpyAV	CCTTC	9 cut(s)	110, 246, 700, 875, 1796, 1904, 2173, 2228, 2536
HpyCH4III	ACNGT	4 cut(s)	2413, 2522, 2572, 2818
HpyF10VI	GCNNNNNNNGC	6 cut(s)	1334, 1655, 1959, 2621, 2673, 2899
Hsp92I	GRCGYC	1 cut(s)	1728
Ksp22I	TGATCA	1 cut(s)	1213
LmnI	GCTCC	2 cut(s)	1084, 1654
Lsp1109I	GCAGC	4 cut(s)	785, 1114, 2698, 2738
LweI	GCATC	2 cut(s)	407, 2624
MbiI	CCGCTC	2 cut(s)	1579, 2876
MfeI	CAATTG	2 cut(s)	209, 1572
MflI	RGATCY	2 cut(s)	1753, 2068
MhlI	GDGCHC	2 cut(s)	622, 2411
MlyI	GAGTC	4 cut(s)	194, 1205, 1922, 2465
MmeI	TCCRAC	1 cut(s)	1224
Mph1103I	ATGCAT	2 cut(s)	1741, 2721
MroXI	GAANNNNTTC	1 cut(s)	1739
MslI	CAYNNNNRTG	7 cut(s)	291, 381, 467, 1035, 1092, 1797, 2830
MspA1I	CMGCKG	1 cut(s)	645
MspR9I	CCNGG	4 cut(s)	86, 1788, 2551, 2708
MunI	CAATTG	2 cut(s)	209, 1572
Mva1269I	GAATGC	2 cut(s)	1739, 1741
MvaI	CCWGG	4 cut(s)	86, 1788, 2551, 2708
MwoI	GCNNNNNNNGC	6 cut(s)	1334, 1655, 1959, 2621, 2673, 2899
NdeI	CATATG	2 cut(s)	306, 2636
NlaIV	GGNNCC	2 cut(s)	393, 1188
NmuCI	GTSAC	9 cut(s)	433, 529, 1094, 1428, 1790, 2444, 2657, 2699, 2774
NsiI	ATGCAT	2 cut(s)	1741, 2721
NspI	RCATGY	2 cut(s)	303, 899
OliI	CACNNNNGTG	2 cut(s)	467, 1797
PagI	TCATGA	1 cut(s)	600
PceI	AGGCCT	1 cut(s)	1838
PciI	ACATGT	2 cut(s)	299, 895
PctI	GAATGC	2 cut(s)	1739, 1741
PdmI	GAANNNNTTC	1 cut(s)	1739
PfeI	GAWTC	5 cut(s)	407, 1040, 2389, 2424, 2863
PflFI	GACNNNGTC	2 cut(s)	184, 1195
PkrI	GCNGC	5 cut(s)	775, 1129, 1581, 2713, 2728
PleI	GAGTC	4 cut(s)	193, 1204, 1922, 2465
PmaCI	CACGTG	2 cut(s)	1799, 1865
PmlI	CACGTG	2 cut(s)	1799, 1865
PpsI	GAGTC	4 cut(s)	193, 1204, 1922, 2465
Ppu21I	YACGTR	3 cut(s)	885, 1799, 1865
PscI	ACATGT	2 cut(s)	299, 895
PsiI	TTATAA	1 cut(s)	1635
Psp6I	CCWGG	4 cut(s)	84, 1786, 2549, 2706
PspCI	CACGTG	2 cut(s)	1799, 1865
PspEI	GGTNACC	1 cut(s)	1790
PspGI	CCWGG	4 cut(s)	84, 1786, 2549, 2706
PspN4I	GGNNCC	2 cut(s)	393, 1188
PspPI	GGNCC	4 cut(s)	392, 714, 1891, 2075
PstI	CTGCAG	1 cut(s)	775
PstNI	CAGNNNCTG	2 cut(s)	2474, 2597
PsuI	RGATCY	2 cut(s)	1753, 2068
PsyI	GACNNNGTC	2 cut(s)	184, 1195
PvuII	CAGCTG	1 cut(s)	645
RsaI	GTAC	8 cut(s)	140, 883, 894, 959, 1230, 2087, 2519, 2524
RsaNI	GTAC	8 cut(s)	139, 882, 893, 958, 1229, 2086, 2518, 2523
RseI	CAYNNNNRTG	7 cut(s)	291, 381, 467, 1035, 1092, 1797, 2830
SatI	GCNGC	5 cut(s)	774, 1128, 1580, 2712, 2727
Sau96I	GGNCC	4 cut(s)	392, 714, 1891, 2075
ScaI	AGTACT	1 cut(s)	2087
SchI	GAGTC	4 cut(s)	194, 1205, 1922, 2465
ScrFI	CCNGG	4 cut(s)	86, 1788, 2551, 2708
SduI	GDGCHC	2 cut(s)	622, 2411
SfaNI	GCATC	2 cut(s)	407, 2624
SfcI	CTRYAG	2 cut(s)	421, 771
SinI	GGWCC	3 cut(s)	392, 1891, 2075
SmiMI	CAYNNNNRTG	7 cut(s)	291, 381, 467, 1035, 1092, 1797, 2830
SmlI	CTYRAG	6 cut(s)	621, 701, 756, 1206, 2033, 2908
SmoI	CTYRAG	6 cut(s)	621, 701, 756, 1206, 2033, 2908
SpeI	ACTAGT	1 cut(s)	1156
SseBI	AGGCCT	1 cut(s)	1838
SsiI	CCGC	2 cut(s)	1579, 2874
StuI	AGGCCT	1 cut(s)	1838
StyD4I	CCNGG	4 cut(s)	84, 1786, 2549, 2706
StyI	CCWWGG	3 cut(s)	99, 1262, 1403
TaaI	ACNGT	4 cut(s)	2413, 2522, 2572, 2818
TaqII	GACCGA	1 cut(s)	1879
TatI	WGTACW	3 cut(s)	138, 892, 2085
TauI	GCSGC	1 cut(s)	1582
TfiI	GAWTC	5 cut(s)	407, 1040, 2389, 2424, 2863
TscAI	CASTG	4 cut(s)	586, 808, 1183, 2008
TseFI	GTSAC	9 cut(s)	433, 529, 1094, 1428, 1790, 2444, 2657, 2699, 2774
TseI	GCWGC	4 cut(s)	773, 1127, 2711, 2726
Tsp45I	GTSAC	9 cut(s)	433, 529, 1094, 1428, 1790, 2444, 2657, 2699, 2774
TspRI	CASTG	4 cut(s)	586, 808, 1183, 2008
Tth111I	GACNNNGTC	2 cut(s)	184, 1195
VpaK11BI	GGWCC	3 cut(s)	392, 1891, 2075
XapI	RAATTY	7 cut(s)	314, 482, 552, 746, 762, 811, 1408
XbaI	TCTAGA	1 cut(s)	1756
XceI	RCATGY	2 cut(s)	303, 899
XcmI	CCANNNNNNNNNTGG	1 cut(s)	747
XmiI	GTMKAC	2 cut(s)	2507, 2820
XmnI	GAANNNNTTC	1 cut(s)	1739
ZraI	GACGTC	1 cut(s)	1729
ZrmI	AGTACT	1 cut(s)	2087
Zsp2I	ATGCAT	2 cut(s)	1741, 2721

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.