Rw5G015130

Reverse transcriptase (RNA-dependent DNA polymerase)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000071
Physical Location & Seq
Forward (+)
18322319 .. 18323803
1485 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G015130.1

Sequence Viewer

Length: 1287 bp
ATGCAATCTGAGTTTCAGGCCCTTGAAGACAACCACACCTGGTCCATGGTTTCTATGCCTTTGGGTTACCACCCAATCGGATGCAAATGGGTCTTCAAGATCAAGTATCATGCTGATGGCACTGTCGAACGTTACAAAGCTCGACTTGTTGCCAAGGGGTTCACTCAACGAGAGGCTGCTGTTCGCAATTGGCCATTGCACCAAATGGATGTGCAAAATGCTTTTCTCCATGGTGAACTTCTTGAGGAAGTGTATATGTTGCCCCTTCCTGGTTATCGTCGACAGGGGGAGAATTTGGTTCGTGATGATTCCATTACTGTGGTATTGCTTTATGTGGATGACATGATTATAACAGGAAATGATGAGAAGGCAATTGGTGACCTCAAGAAGTTCCTTAACAGTTGTTTTAAGATCAAAGATCTTGGACCACTCAAATATTTCCTTGGCATAGAAGTTGCACGTTCCAAAGCTGGAATTACAATTTGTCAACGGAAGTATATGTTGGATATATTGGAGGAAGCCGGCTTACTTGGAGTAAAACCTGCAAAAGTACCTATGGAGCCTGATTTGGTGTTAACTACAAAAGGGAGTGATGCTCTCAAGGACCCTTCACGGTACCGCCGATTGATTGGGAAATTGATCTATCTCACAATCACCCGGCCAGACATTGCATATGCTGTGAACACACTCAGCCAATTCATGCAGGAACCCAAGCTACATCACCTTAAGACAGCACACCGTCTTCTCCAATATCTCAAGGCAGTCCCAGGACAAGGCTTACTATTTTCTTCTCATAGTCCACTTCGTTTGATGGGATATTGTGACGCTGATTGGGCAAGGTGCCCGATTACACGCCGATCAGTAACGGGCTATTGTGTGTTTCTTGGCAAGTCACTTGTATCATGGAAGAGTAAGAAGCAAGTTACGGTATCTAGATCATCCGCCGAAGCTGAATATCGGTCTATGGCTGCAGCTGCTTGTGAACTTACTTGGTTGAGATACTTGTTGAGAGATTTACGTGTACAACACTCTGAGCCAGCAAGACTGTTTTGTGACAATCAAGCAGCCTTACACATTGCAGCAAACCCAGTTTATCATGAACGAACGAAGCACATTGAGCTAGATTGTCACACCGTTCGTGAAAGAATTCAAAGAGGGGAAGTCAAAACTGCTTATGTGCACACTGGAAGTCAAATAACTGACTTGTTTACAAAGCCACTAAGAGCACCTGCTTTCCGCACGCACCTTGGCAAGTTGGGTGTTATTGACATTCACACTCCAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_3 Retrotrans_gag

Protein Analysis

428

Amino Acids

48.73

Weight (kDa)

9.31

Isoelectric Point (pI)

35.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_2 PF07727 11 - 58 2.4e-10 Reverse transcriptase (RNA-dependent DNA polymerase)
RVT_2 PF07727 59 - 97 1.2e-07 Reverse transcriptase (RNA-dependent DNA polymerase)
RVT_2 PF07727 106 - 187 3.4e-20 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000071)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G23160 AT4G23160
fragaria_vesca FvH4_2g08111 FvH4_2g17332 FvH4_2g18071 FvH4_2g20531 FvH4_2g20842 FvH4_2g20842 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g24231 FvH4_2g24232 FvH4_3g00831 FvH4_3g00831 FvH4_3g03561 FvH4_3g03561 FvH4_3g10282 FvH4_3g18165 FvH4_3g19021 FvH4_3g24071 FvH4_3g33123 FvH4_3g33970 FvH4_3g38851 FvH4_3g39133 FvH4_3g39271 FvH4_4g00981 FvH4_4g08191 FvH4_4g08311 FvH4_4g08311 FvH4_4g08311 FvH4_4g09341 FvH4_4g12550 FvH4_4g12550 FvH4_4g12550 FvH4_4g13391 FvH4_4g14842 FvH4_4g27901 FvH4_5g11561 FvH4_5g15611 FvH4_5g17991 FvH4_5g27871 FvH4_5g29995 FvH4_5g39662 FvH4_6g02392 FvH4_6g12781 FvH4_6g20106 FvH4_6g20106 FvH4_6g20106 FvH4_6g30872 FvH4_6g34901 FvH4_6g35632 FvH4_6g36661 FvH4_6g43795 FvH4_6g44611 FvH4_7g01791 FvH4_7g04041 FvH4_7g12551 FvH4_7g23351
malus_domestica MD00G1134200.v1.1 MD01G1096500.v1.1 MD01G1128200.v1.1 MD02G1250500.v1.1 MD02G1294900.v1.1 MD03G1121800.v1.1 MD04G1021400.v1.1 MD04G1051100.v1.1 MD04G1051300.v1.1 MD04G1099000.v1.1 MD05G1047900.v1.1 MD05G1298000.v1.1 MD06G1064200.v1.1 MD06G1120600.v1.1 MD07G1013900.v1.1 MD09G1226900.v1.1 MD10G1196700.v1.1 MD10G1307000.v1.1 MD10G1338900.v1.1 MD11G1107300.v1.1 MD11G1138300.v1.1 MD11G1236700.v1.1 MD12G1032500.v1.1 MD12G1150100.v1.1 MD12G1247800.v1.1 MD17G1267900.v1.1
pyrus_communis pycom02g03660 pycom02g13370 pycom02g14840 pycom02g18400 pycom02g18880 pycom02g22740 pycom04g08800 pycom04g15770 pycom05g07980 pycom05g19640 pycom06g09360 pycom07g13160 pycom08g11820 pycom08g21740 pycom09g19980 pycom10g04810 pycom10g05420 pycom10g14650 pycom11g03140 pycom11g21550 pycom12g14740 pycom13g01600 pycom13g29510 pycom14g07060 pycom15g01990 pycom15g19850 pycom15g30860 pycom16g15290 pycom16g16250 pycom16g25390 pycom17g17270 pycom520g00070
rosa_chinensis RchiOBHm_Chr1g0316691 RchiOBHm_Chr1g0320751 RchiOBHm_Chr1g0320771 RchiOBHm_Chr1g0322231 RchiOBHm_Chr1g0322861 RchiOBHm_Chr1g0328471 RchiOBHm_Chr1g0333321 RchiOBHm_Chr1g0337871 RchiOBHm_Chr1g0339051 RchiOBHm_Chr1g0349861 RchiOBHm_Chr1g0361951 RchiOBHm_Chr1g0365931 RchiOBHm_Chr1g0365981 RchiOBHm_Chr1g0377711 RchiOBHm_Chr1g0381581 RchiOBHm_Chr1g0382741 RchiOBHm_Chr1g0383501 RchiOBHm_Chr2g0101201 RchiOBHm_Chr2g0113601 RchiOBHm_Chr2g0124031 RchiOBHm_Chr2g0135481 RchiOBHm_Chr2g0148361 RchiOBHm_Chr2g0150101 RchiOBHm_Chr2g0154181 RchiOBHm_Chr2g0156071 RchiOBHm_Chr2g0166521 RchiOBHm_Chr2g0166821 RchiOBHm_Chr3g0448011 RchiOBHm_Chr3g0450941 RchiOBHm_Chr3g0450961 RchiOBHm_Chr3g0451051 RchiOBHm_Chr3g0451721 RchiOBHm_Chr3g0453371 RchiOBHm_Chr3g0454881 RchiOBHm_Chr3g0457421 RchiOBHm_Chr3g0457661 RchiOBHm_Chr3g0460011 RchiOBHm_Chr3g0461531 RchiOBHm_Chr3g0461981 RchiOBHm_Chr3g0463471 RchiOBHm_Chr3g0466641 RchiOBHm_Chr3g0468181 RchiOBHm_Chr3g0483351 RchiOBHm_Chr4g0394001 RchiOBHm_Chr4g0397261 RchiOBHm_Chr4g0404531 RchiOBHm_Chr4g0410841 RchiOBHm_Chr4g0415501 RchiOBHm_Chr4g0425221 RchiOBHm_Chr4g0430811 RchiOBHm_Chr5g0010831 RchiOBHm_Chr5g0016831 RchiOBHm_Chr5g0016851 RchiOBHm_Chr5g0031351 RchiOBHm_Chr5g0032151 RchiOBHm_Chr5g0041201 RchiOBHm_Chr5g0042191 RchiOBHm_Chr5g0064121 RchiOBHm_Chr5g0066601 RchiOBHm_Chr5g0078371 RchiOBHm_Chr5g0079271 RchiOBHm_Chr6g0263751 RchiOBHm_Chr6g0285111 RchiOBHm_Chr6g0298961 RchiOBHm_Chr6g0300481 RchiOBHm_Chr6g0303211 RchiOBHm_Chr7g0192341 RchiOBHm_Chr7g0196171 RchiOBHm_Chr7g0200281 RchiOBHm_Chr7g0200551 RchiOBHm_Chr7g0207611 RchiOBHm_Chr7g0212421 RchiOBHm_Chr7g0214991 RchiOBHm_Chr7g0219211 RchiOBHm_Chr7g0242371
rosa_laevigata RLG00000002389 RLG00000007980
rosa_roxburghii Rroxscaffold_1G00053480 Rroxscaffold_2G00090890 Rroxscaffold_2G00099660 Rroxscaffold_2G00134510 Rroxscaffold_3G00221450 Rroxscaffold_3G00240550 Rroxscaffold_4G00305710 Rroxscaffold_4G00306360 Rroxscaffold_4G00306800 Rroxscaffold_4G00329090 Rroxscaffold_5G00382750 Rroxscaffold_5G00385900 Rroxscaffold_6G00403080 Rroxscaffold_7G00172890 Rroxscaffold_7G00186690
rosa_samantha Rh1DG425600
rosa_wichuraiana Rw0G001640 Rw0G009160 Rw0G010480 Rw0G010520 Rw0G013850 Rw0G017170 Rw0G018520 Rw0G019280 Rw0G022780 Rw1G000360 Rw1G001410 Rw1G001630 Rw1G002100 Rw1G006810 Rw1G010680 Rw1G012700 Rw1G016160 Rw1G022180 Rw1G023580 Rw1G025640 Rw1G026310 Rw1G027230 Rw1G028110 Rw1G034180 Rw2G004990 Rw2G005840 Rw2G007350 Rw2G024730 Rw2G025580 Rw2G026670 Rw2G027210 Rw2G029060 Rw2G031560 Rw2G042190 Rw2G043850 Rw2G045990 Rw2G046130 Rw2G049290 Rw2G049310 Rw2G049790 Rw2G052250 Rw3G004350 Rw3G013100 Rw3G015280 Rw3G015720 Rw3G024630 Rw3G026470 Rw3G027840 Rw3G028960 Rw3G029130 Rw3G029160 Rw4G000280 Rw4G006650 Rw4G008970 Rw4G009310 Rw4G011730 Rw4G012000 Rw4G012610 Rw4G014300 Rw4G014690 Rw4G015190 Rw4G016470 Rw4G020750 Rw4G025060 Rw4G025080 Rw5G005610 Rw5G010380 Rw5G013970 Rw5G015130 Rw5G015250 Rw5G017640 Rw5G019910 Rw5G022410 Rw5G023550 Rw5G029710 Rw5G037650 Rw5G038280 Rw5G038570 Rw5G041550 Rw5G042600 Rw5G043910 Rw5G047850 Rw5G048200 Rw5G049920 Rw6G000260 Rw6G000530 Rw6G001710 Rw6G005090 Rw6G006730 Rw6G009310 Rw6G010950 Rw6G011630 Rw6G012080 Rw6G012750 Rw6G015970 Rw6G020700 Rw6G024350 Rw7G008540 Rw7G016620 Rw7G019400 Rw7G020010 Rw7G024240 Rw7G025630 Rw7G027550 Rw7G027770 Rw7G027960 Rw7G028450 Rw7G031280 Rw7G031970 Rw7G032180 Rw7G033590 Rw7G033720 Rw7G033890 Rw7G041800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 350
AarI CACCTGC 1 cut(s) 1237
Acc36I ACCTGC 2 cut(s) 550, 1237
Acc65I GGTACC 1 cut(s) 615
AccB1I GGYRCC 2 cut(s) 615, 840
AccI GTMKAC 1 cut(s) 280
AciI CCGC 3 cut(s) 619, 942, 1237
AclI AACGTT 1 cut(s) 130
AcoI YGGCCR 2 cut(s) 191, 659
AcsI RAATTY 2 cut(s) 292, 1146
AfaI GTAC 3 cut(s) 552, 617, 1023
AfiI CCNNNNNNNGG 2 cut(s) 269, 773
AflII CTTAAG 1 cut(s) 725
AflIII ACRYGT 1 cut(s) 1018
AgsI TTSAA 3 cut(s) 26, 97, 1151
AjnI CCWGG 3 cut(s) 38, 268, 766
AjuI GAANNNNNNNTTGG 2 cut(s) 485, 517
AluBI AGCT 6 cut(s) 140, 470, 715, 950, 974, 1120
AluI AGCT 6 cut(s) 140, 470, 715, 950, 974, 1120
Alw21I GWGCWC 2 cut(s) 1182, 1228
Alw44I GTGCAC 1 cut(s) 1178
AoxI GGCC 3 cut(s) 18, 191, 659
ApaLI GTGCAC 1 cut(s) 1178
ApeKI GCWGC 6 cut(s) 176, 968, 971, 974, 1064, 1079
ApoI RAATTY 2 cut(s) 292, 1146
Asp700I GAANNNNTTC 1 cut(s) 1146
Asp718I GGTACC 1 cut(s) 615
AspS9I GGNCC 4 cut(s) 19, 42, 425, 604
AsuC2I CCSGG 1 cut(s) 658
AsuHPI GGTGA 4 cut(s) 245, 389, 646, 713
AvaII GGWCC 3 cut(s) 42, 425, 604
BaeGI GKGCMC 2 cut(s) 845, 1182
BalI TGGCCA 1 cut(s) 193
BanI GGYRCC 2 cut(s) 615, 840
BarI GAAGNNNNNNTAC 2 cut(s) 510, 542
BbsI GAAGAC 3 cut(s) 33, 85, 734
Bbv12I GWGCWC 2 cut(s) 1182, 1228
BbvI GCAGC 6 cut(s) 163, 955, 961, 983, 1076, 1091
BccI CCATC 2 cut(s) 110, 805
BciT130I CCWGG 3 cut(s) 40, 270, 768
BcnI CCSGG 1 cut(s) 658
BfaI CTAG 2 cut(s) 933, 1121
BfmI CTRYAG 1 cut(s) 969
BfrI CTTAAG 1 cut(s) 725
BfuAI ACCTGC 2 cut(s) 550, 1237
BglII AGATCT 1 cut(s) 418
BisI GCNGC 6 cut(s) 177, 969, 972, 975, 1065, 1080
BlsI GCNGC 6 cut(s) 178, 970, 973, 976, 1066, 1081
Bme1390I CCNGG 4 cut(s) 40, 270, 658, 768
Bme18I GGWCC 3 cut(s) 42, 425, 604
BmgT120I GGNCC 4 cut(s) 19, 42, 425, 604
BmiI GGNNCC 5 cut(s) 561, 606, 617, 708, 842
BmrFI CCNGG 4 cut(s) 40, 270, 658, 768
BmrI ACTGGG 1 cut(s) 1082
BmsI GCATC 2 cut(s) 71, 583
BmuI ACTGGG 1 cut(s) 1082
BpiI GAAGAC 3 cut(s) 33, 85, 734
BplI GAGNNNNNCTC 2 cut(s) 580, 612
BpuEI CTTGAG 4 cut(s) 263, 368, 584, 740
BpuMI CCSGG 1 cut(s) 658
BsaAI YACGTR 1 cut(s) 1019
BsaJI CCNNGG 6 cut(s) 45, 153, 229, 442, 766, 1246
Bsc4I CCNNNNNNNGG 2 cut(s) 269, 773
Bse118I RCCGGY 1 cut(s) 521
Bse1I ACTGG 2 cut(s) 1088, 1189
Bse3DI GCAATG 3 cut(s) 194, 666, 1074
BseBI CCWGG 3 cut(s) 40, 270, 768
BseDI CCNNGG 6 cut(s) 45, 153, 229, 442, 766, 1246
BseGI GGATG 4 cut(s) 86, 214, 343, 938
BseLI CCNNNNNNNGG 2 cut(s) 269, 773
BseMI GCAATG 3 cut(s) 194, 666, 1074
BseMII CTCAG 2 cut(s) 703, 1023
BseNI ACTGG 2 cut(s) 1088, 1189
BseSI GKGCMC 2 cut(s) 845, 1182
BseXI GCAGC 6 cut(s) 163, 955, 961, 983, 1076, 1091
BshFI GGCC 3 cut(s) 20, 193, 661
BshNI GGYRCC 2 cut(s) 615, 840
BsiHKAI GWGCWC 2 cut(s) 1182, 1228
BsiSI CCGG 2 cut(s) 522, 658
BslFI GGGAC 1 cut(s) 749
BslI CCNNNNNNNGG 2 cut(s) 269, 773
BsmFI GGGAC 1 cut(s) 749
BsnI GGCC 3 cut(s) 20, 193, 661
Bsp1286I GDGCHC 3 cut(s) 845, 1182, 1228
Bsp1407I TGTACA 1 cut(s) 1021
Bsp143I GATC 6 cut(s) 99, 411, 418, 639, 857, 935
Bsp19I CCATGG 2 cut(s) 45, 229
BspACI CCGC 3 cut(s) 619, 942, 1237
BspANI GGCC 3 cut(s) 20, 193, 661
BspCNI CTCAG 2 cut(s) 702, 1024
BspHI TCATGA 1 cut(s) 1096
BspLI GGNNCC 5 cut(s) 561, 606, 617, 708, 842
BspMAI CTGCAG 1 cut(s) 973
BspMI ACCTGC 2 cut(s) 550, 1237
BspT107I GGYRCC 2 cut(s) 615, 840
BspTI CTTAAG 1 cut(s) 725
BsrDI GCAATG 3 cut(s) 194, 666, 1074
BsrFI RCCGGY 1 cut(s) 521
BsrGI TGTACA 1 cut(s) 1021
BsrI ACTGG 2 cut(s) 1088, 1189
BssAI RCCGGY 1 cut(s) 521
BssECI CCNNGG 6 cut(s) 45, 153, 229, 442, 766, 1246
BssMI GATC 6 cut(s) 99, 411, 418, 639, 857, 935
BssT1I CCWWGG 5 cut(s) 45, 153, 229, 442, 1246
Bst2UI CCWGG 3 cut(s) 40, 270, 768
Bst4CI ACNGT 8 cut(s) 124, 319, 401, 615, 740, 928, 1047, 1135
Bst6I CTCTTC 1 cut(s) 902
BstAFI CTTAAG 1 cut(s) 725
BstAUI TGTACA 1 cut(s) 1021
BstBAI YACGTR 1 cut(s) 1019
BstC8I GCNNGC 3 cut(s) 523, 1038, 1241
BstDEI CTNAG 4 cut(s) 9, 689, 1032, 1220
BstDSI CCRYGG 2 cut(s) 45, 229
BstEII GGTNACC 2 cut(s) 65, 377
BstF5I GGATG 4 cut(s) 86, 214, 343, 938
BstKTI GATC 6 cut(s) 102, 414, 421, 642, 860, 938
BstMBI GATC 6 cut(s) 99, 411, 418, 639, 857, 935
BstMWI GCNNNNNNNGC 3 cut(s) 833, 974, 1117
BstNI CCWGG 3 cut(s) 40, 270, 768
BstPI GGTNACC 2 cut(s) 65, 377
BstSCI CCNGG 4 cut(s) 38, 268, 656, 766
BstSFI CTRYAG 1 cut(s) 969
BstSLI GKGCMC 2 cut(s) 845, 1182
BstV1I GCAGC 6 cut(s) 163, 955, 961, 983, 1076, 1091
BstV2I GAAGAC 3 cut(s) 33, 85, 734
BstX2I RGATCY 1 cut(s) 418
BstXI CCANNNNNNTGG 1 cut(s) 319
BstYI RGATCY 1 cut(s) 418
BsuRI GGCC 3 cut(s) 20, 193, 661
BtgI CCRYGG 2 cut(s) 45, 229
BtsCI GGATG 4 cut(s) 86, 214, 343, 938
BtsIMutI CAGTG 2 cut(s) 120, 1182
BveI ACCTGC 2 cut(s) 550, 1237
Cac8I GCNNGC 3 cut(s) 523, 1038, 1241
CciI TCATGA 1 cut(s) 1096
Cfr10I RCCGGY 1 cut(s) 521
Cfr13I GGNCC 4 cut(s) 19, 42, 425, 604
CseI GACGC 1 cut(s) 833
CsiI ACCWGGT 1 cut(s) 38
Csp6I GTAC 3 cut(s) 551, 616, 1022
CspCI CAANNNNNGTGG 2 cut(s) 789, 824
CviAII CATG 7 cut(s) 46, 110, 230, 343, 700, 903, 1097
CviQI GTAC 3 cut(s) 551, 616, 1022
DdeI CTNAG 4 cut(s) 9, 689, 1032, 1220
DpnI GATC 6 cut(s) 101, 413, 420, 641, 859, 937
DpnII GATC 6 cut(s) 99, 411, 418, 639, 857, 935
EaeI YGGCCR 2 cut(s) 191, 659
Eam1104I CTCTTC 1 cut(s) 902
EarI CTCTTC 1 cut(s) 902
EciI GGCGGA 1 cut(s) 931
Eco130I CCWWGG 5 cut(s) 45, 153, 229, 442, 1246
Eco47I GGWCC 3 cut(s) 42, 425, 604
Eco91I GGTNACC 2 cut(s) 65, 377
EcoO109I RGGNCCY 2 cut(s) 19, 604
EcoO65I GGTNACC 2 cut(s) 65, 377
EcoRI GAATTC 1 cut(s) 1146
EcoRII CCWGG 3 cut(s) 38, 268, 766
EcoT14I CCWWGG 5 cut(s) 45, 153, 229, 442, 1246
ErhI CCWWGG 5 cut(s) 45, 153, 229, 442, 1246
FaeI CATG 7 cut(s) 49, 113, 233, 346, 703, 906, 1100
FalI AAGNNNNNCTT 2 cut(s) 129, 161
FaqI GGGAC 1 cut(s) 749
FatI CATG 7 cut(s) 45, 109, 229, 342, 699, 902, 1096
FauNDI CATATG 1 cut(s) 673
FblI GTMKAC 1 cut(s) 280
Fnu4HI GCNGC 6 cut(s) 177, 969, 972, 975, 1065, 1080
FokI GGATG 4 cut(s) 93, 221, 350, 925
Fsp4HI GCNGC 6 cut(s) 177, 969, 972, 975, 1065, 1080
FspBI CTAG 2 cut(s) 933, 1121
GluI GCNGC 6 cut(s) 177, 969, 972, 975, 1065, 1080
HaeIII GGCC 3 cut(s) 20, 193, 661
HapII CCGG 2 cut(s) 522, 658
HgaI GACGC 1 cut(s) 833
Hin1II CATG 7 cut(s) 49, 113, 233, 346, 703, 906, 1100
HincII GTYRAC 3 cut(s) 281, 488, 576
HindII GTYRAC 3 cut(s) 281, 488, 576
HinfI GANTC 1 cut(s) 308
HpaI GTTAAC 1 cut(s) 576
HpaII CCGG 2 cut(s) 522, 658
HphI GGTGA 4 cut(s) 245, 389, 646, 713
Hpy188I TCNGA 3 cut(s) 10, 80, 1033
Hpy188III TCNNGA 7 cut(s) 97, 242, 302, 385, 933, 1097, 1139
Hpy99I CGWCG 1 cut(s) 282
HpyAV CCTTC 3 cut(s) 275, 361, 618
HpyCH4III ACNGT 8 cut(s) 124, 319, 401, 615, 740, 928, 1047, 1135
HpyCH4IV ACGT 3 cut(s) 130, 460, 1018
HpyF10VI GCNNNNNNNGC 3 cut(s) 833, 974, 1117
HpyF3I CTNAG 4 cut(s) 9, 689, 1032, 1220
HpySE526I ACGT 3 cut(s) 130, 460, 1018
Hsp92II CATG 7 cut(s) 49, 113, 233, 346, 703, 906, 1100
KpnI GGTACC 1 cut(s) 619
KroI GCCGGC 1 cut(s) 521
KroNI GCCGGC 1 cut(s) 523
KspAI GTTAAC 1 cut(s) 576
Kzo9I GATC 6 cut(s) 99, 411, 418, 639, 857, 935
LmnI GCTCC 1 cut(s) 559
Lsp1109I GCAGC 6 cut(s) 163, 955, 961, 983, 1076, 1091
LweI GCATC 2 cut(s) 71, 583
MabI ACCWGGT 1 cut(s) 38
MaeI CTAG 2 cut(s) 933, 1121
MaeII ACGT 3 cut(s) 130, 460, 1018
MaeIII GTNAC 9 cut(s) 65, 131, 377, 821, 862, 891, 922, 1052, 1127
MalI GATC 6 cut(s) 101, 413, 420, 641, 859, 937
MboI GATC 6 cut(s) 99, 411, 418, 639, 857, 935
MboII GAAGA 5 cut(s) 38, 85, 734, 780, 919
MfeI CAATTG 2 cut(s) 187, 372
MflI RGATCY 1 cut(s) 418
MhlI GDGCHC 3 cut(s) 845, 1182, 1228
MlsI TGGCCA 1 cut(s) 193
MluCI AATT 8 cut(s) 187, 292, 372, 474, 480, 635, 695, 1146
MluNI TGGCCA 1 cut(s) 193
MmeI TCCRAC 1 cut(s) 483
MnlI CCTC 5 cut(s) 166, 238, 392, 508, 1148
Mox20I TGGCCA 1 cut(s) 193
MroNI GCCGGC 1 cut(s) 521
MroXI GAANNNNTTC 1 cut(s) 1146
MscI TGGCCA 1 cut(s) 193
MseI TTAA 4 cut(s) 396, 408, 575, 726
MslI CAYNNNNRTG 2 cut(s) 114, 317
Msp20I TGGCCA 1 cut(s) 193
MspA1I CMGCKG 1 cut(s) 974
MspCI CTTAAG 1 cut(s) 725
MspI CCGG 2 cut(s) 522, 658
MspR9I CCNGG 4 cut(s) 40, 270, 658, 768
MunI CAATTG 2 cut(s) 187, 372
MvaI CCWGG 3 cut(s) 40, 270, 768
MwoI GCNNNNNNNGC 3 cut(s) 833, 974, 1117
NaeI GCCGGC 1 cut(s) 523
NciI CCSGG 1 cut(s) 658
NcoI CCATGG 2 cut(s) 45, 229
NdeI CATATG 1 cut(s) 673
NdeII GATC 6 cut(s) 99, 411, 418, 639, 857, 935
NgoMIV GCCGGC 1 cut(s) 521
NlaIII CATG 7 cut(s) 49, 113, 233, 346, 703, 906, 1100
NlaIV GGNNCC 5 cut(s) 561, 606, 617, 708, 842
NmuCI GTSAC 5 cut(s) 377, 821, 891, 1052, 1127
PagI TCATGA 1 cut(s) 1096
PaqCI CACCTGC 1 cut(s) 1237
PcsI WCGNNNNNNNCGW 1 cut(s) 619
PdiI GCCGGC 1 cut(s) 523
PdmI GAANNNNTTC 1 cut(s) 1146
PfeI GAWTC 1 cut(s) 308
PkrI GCNGC 6 cut(s) 178, 970, 973, 976, 1066, 1081
Ppu21I YACGTR 1 cut(s) 1019
PpuMI RGGWCCY 1 cut(s) 604
PsiI TTATAA 1 cut(s) 350
Psp1406I AACGTT 1 cut(s) 130
Psp5II RGGWCCY 1 cut(s) 604
Psp6I CCWGG 3 cut(s) 38, 268, 766
PspEI GGTNACC 2 cut(s) 65, 377
PspGI CCWGG 3 cut(s) 38, 268, 766
PspN4I GGNNCC 5 cut(s) 561, 606, 617, 708, 842
PspPI GGNCC 4 cut(s) 19, 42, 425, 604
PspPPI RGGWCCY 1 cut(s) 604
PsrI GAACNNNNNNTAC 2 cut(s) 699, 731
PstI CTGCAG 1 cut(s) 973
PsuI RGATCY 1 cut(s) 418
PvuII CAGCTG 1 cut(s) 974
RsaI GTAC 3 cut(s) 552, 617, 1023
RsaNI GTAC 3 cut(s) 551, 616, 1022
RseI CAYNNNNRTG 2 cut(s) 114, 317
SalI GTCGAC 1 cut(s) 279
SaqAI TTAA 4 cut(s) 396, 408, 575, 726
SatI GCNGC 6 cut(s) 177, 969, 972, 975, 1065, 1080
Sau3AI GATC 6 cut(s) 99, 411, 418, 639, 857, 935
Sau96I GGNCC 4 cut(s) 19, 42, 425, 604
ScrFI CCNGG 4 cut(s) 40, 270, 658, 768
SduI GDGCHC 3 cut(s) 845, 1182, 1228
SexAI ACCWGGT 1 cut(s) 38
SfaNI GCATC 2 cut(s) 71, 583
SfcI CTRYAG 1 cut(s) 969
SinI GGWCC 3 cut(s) 42, 425, 604
SmiMI CAYNNNNRTG 2 cut(s) 114, 317
SmlI CTYRAG 5 cut(s) 242, 383, 599, 725, 755
SmoI CTYRAG 5 cut(s) 242, 383, 599, 725, 755
Sse9I AATT 8 cut(s) 187, 292, 372, 474, 480, 635, 695, 1146
SsiI CCGC 3 cut(s) 619, 942, 1237
SspI AATATT 1 cut(s) 437
SspMI CTAG 2 cut(s) 933, 1121
StyD4I CCNGG 4 cut(s) 38, 268, 656, 766
StyI CCWWGG 5 cut(s) 45, 153, 229, 442, 1246
TaaI ACNGT 8 cut(s) 124, 319, 401, 615, 740, 928, 1047, 1135
TaiI ACGT 3 cut(s) 133, 463, 1021
TaqI TCGA 3 cut(s) 126, 142, 280
TaqII GACCGA 1 cut(s) 948
TasI AATT 8 cut(s) 187, 292, 372, 474, 480, 635, 695, 1146
TatI WGTACW 1 cut(s) 1021
TfiI GAWTC 1 cut(s) 308
Tru1I TTAA 4 cut(s) 396, 408, 575, 726
Tru9I TTAA 4 cut(s) 396, 408, 575, 726
TscAI CASTG 2 cut(s) 127, 1189
TseFI GTSAC 5 cut(s) 377, 821, 891, 1052, 1127
TseI GCWGC 6 cut(s) 176, 968, 971, 974, 1064, 1079
Tsp45I GTSAC 5 cut(s) 377, 821, 891, 1052, 1127
TspDTI ATGAA 2 cut(s) 688, 1113
TspGWI ACGGA 1 cut(s) 505
TspRI CASTG 2 cut(s) 127, 1189
Vha464I CTTAAG 1 cut(s) 725
VneI GTGCAC 1 cut(s) 1178
VpaK11BI GGWCC 3 cut(s) 42, 425, 604
XapI RAATTY 2 cut(s) 292, 1146
XbaI TCTAGA 1 cut(s) 932
XmiI GTMKAC 1 cut(s) 280
XmnI GAANNNNTTC 1 cut(s) 1146
XspI CTAG 2 cut(s) 933, 1121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.