Reverse transcriptase (RNA-dependent DNA polymerase)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_2 | PF07727 | 3 - 106 | 3.1e-21 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 896, 942 |
| Acc65I | GGTACC | 1 cut(s) | 352 |
| AccB1I | GGYRCC | 1 cut(s) | 352 |
| AccI | GTMKAC | 1 cut(s) | 620 |
| AciI | CCGC | 2 cut(s) | 4, 710 |
| AcsI | RAATTY | 1 cut(s) | 498 |
| AcuI | CTGAAG | 1 cut(s) | 524 |
| AdeI | CACNNNGTG | 1 cut(s) | 736 |
| AfaI | GTAC | 6 cut(s) | 194, 354, 509, 537, 852, 865 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 530 |
| AflII | CTTAAG | 1 cut(s) | 188 |
| AgsI | TTSAA | 1 cut(s) | 514 |
| AjnI | CCWGG | 2 cut(s) | 215, 523 |
| Alw21I | GWGCWC | 1 cut(s) | 370 |
| Alw26I | GTCTC | 2 cut(s) | 139, 269 |
| ApeKI | GCWGC | 1 cut(s) | 824 |
| ApoI | RAATTY | 1 cut(s) | 498 |
| Asp718I | GGTACC | 1 cut(s) | 352 |
| AspLEI | GCGC | 1 cut(s) | 393 |
| AsuHPI | GGTGA | 2 cut(s) | 194, 457 |
| AsuNHI | GCTAGC | 1 cut(s) | 151 |
| BanI | GGYRCC | 1 cut(s) | 352 |
| BanII | GRGCYC | 1 cut(s) | 370 |
| BarI | GAAGNNNNNNTAC | 1 cut(s) | 31 |
| Bbv12I | GWGCWC | 1 cut(s) | 370 |
| BbvCI | CCTCAGC | 1 cut(s) | 705 |
| BbvI | GCAGC | 1 cut(s) | 836 |
| BccI | CCATC | 1 cut(s) | 124 |
| BciT130I | CCWGG | 2 cut(s) | 217, 525 |
| BciVI | GTATCC | 1 cut(s) | 351 |
| BcoDI | GTCTC | 2 cut(s) | 139, 269 |
| BfaI | CTAG | 5 cut(s) | 152, 699, 776, 908, 954 |
| BfmI | CTRYAG | 1 cut(s) | 140 |
| BfoI | RGCGCY | 1 cut(s) | 394 |
| BfrI | CTTAAG | 1 cut(s) | 188 |
| BfuI | GTATCC | 1 cut(s) | 351 |
| BisI | GCNGC | 1 cut(s) | 825 |
| BlsI | GCNGC | 1 cut(s) | 826 |
| BmcAI | AGTACT | 3 cut(s) | 194, 509, 537 |
| Bme1390I | CCNGG | 2 cut(s) | 217, 525 |
| BmiI | GGNNCC | 1 cut(s) | 354 |
| BmrFI | CCNGG | 2 cut(s) | 217, 525 |
| BmsI | GCATC | 5 cut(s) | 64, 475, 574, 901, 947 |
| BmtI | GCTAGC | 1 cut(s) | 155 |
| BpmI | CTGGAG | 1 cut(s) | 507 |
| Bpu10I | CCTNAGC | 1 cut(s) | 705 |
| BpuEI | CTTGAG | 2 cut(s) | 35, 584 |
| BsaAI | YACGTR | 1 cut(s) | 770 |
| BsaJI | CCNNGG | 2 cut(s) | 216, 325 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 530 |
| Bse1I | ACTGG | 2 cut(s) | 115, 848 |
| BseBI | CCWGG | 2 cut(s) | 217, 525 |
| BseDI | CCNNGG | 2 cut(s) | 216, 325 |
| BseGI | GGATG | 2 cut(s) | 100, 490 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 530 |
| BseMII | CTCAG | 5 cut(s) | 45, 150, 327, 696, 746 |
| BseNI | ACTGG | 2 cut(s) | 115, 848 |
| BseXI | GCAGC | 1 cut(s) | 836 |
| BshNI | GGYRCC | 1 cut(s) | 352 |
| BsiHKAI | GWGCWC | 1 cut(s) | 370 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 530 |
| BsmAI | GTCTC | 2 cut(s) | 139, 269 |
| Bsp1286I | GDGCHC | 1 cut(s) | 370 |
| Bsp143I | GATC | 4 cut(s) | 346, 772, 859, 883 |
| Bsp19I | CCATGG | 1 cut(s) | 325 |
| BspACI | CCGC | 2 cut(s) | 4, 710 |
| BspCNI | CTCAG | 5 cut(s) | 44, 151, 328, 697, 747 |
| BspLI | GGNNCC | 1 cut(s) | 354 |
| BspMAI | CTGCAG | 1 cut(s) | 144 |
| BspOI | GCTAGC | 1 cut(s) | 155 |
| BspT107I | GGYRCC | 1 cut(s) | 352 |
| BspTI | CTTAAG | 1 cut(s) | 188 |
| BsrI | ACTGG | 2 cut(s) | 115, 848 |
| BssECI | CCNNGG | 2 cut(s) | 216, 325 |
| BssMI | GATC | 4 cut(s) | 346, 772, 859, 883 |
| BssT1I | CCWWGG | 1 cut(s) | 325 |
| Bst2UI | CCWGG | 2 cut(s) | 217, 525 |
| Bst4CI | ACNGT | 1 cut(s) | 124 |
| Bst6I | CTCTTC | 1 cut(s) | 662 |
| BstAFI | CTTAAG | 1 cut(s) | 188 |
| BstBAI | YACGTR | 1 cut(s) | 770 |
| BstC8I | GCNNGC | 2 cut(s) | 153, 370 |
| BstDEI | CTNAG | 7 cut(s) | 31, 159, 199, 336, 705, 755, 867 |
| BstDSI | CCRYGG | 1 cut(s) | 325 |
| BstF5I | GGATG | 2 cut(s) | 100, 490 |
| BstH2I | RGCGCY | 1 cut(s) | 394 |
| BstHHI | GCGC | 1 cut(s) | 393 |
| BstKTI | GATC | 4 cut(s) | 349, 775, 862, 886 |
| BstMAI | GTCTC | 2 cut(s) | 139, 269 |
| BstMBI | GATC | 4 cut(s) | 346, 772, 859, 883 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 148, 593 |
| BstNI | CCWGG | 2 cut(s) | 217, 525 |
| BstNSI | RCATGY | 1 cut(s) | 875 |
| BstSCI | CCNGG | 2 cut(s) | 215, 523 |
| BstSFI | CTRYAG | 1 cut(s) | 140 |
| BstV1I | GCAGC | 1 cut(s) | 836 |
| BsuI | GTATCC | 1 cut(s) | 351 |
| BtgI | CCRYGG | 1 cut(s) | 325 |
| BtsCI | GGATG | 2 cut(s) | 100, 490 |
| BtsI | GCAGTG | 1 cut(s) | 441 |
| BtsIMutI | CAGTG | 3 cut(s) | 108, 120, 441 |
| Cac8I | GCNNGC | 2 cut(s) | 153, 370 |
| CfoI | GCGC | 1 cut(s) | 393 |
| Csp6I | GTAC | 6 cut(s) | 193, 353, 508, 536, 851, 864 |
| CviAII | CATG | 7 cut(s) | 326, 457, 481, 663, 799, 857, 872 |
| CviQI | GTAC | 6 cut(s) | 193, 353, 508, 536, 851, 864 |
| DdeI | CTNAG | 7 cut(s) | 31, 159, 199, 336, 705, 755, 867 |
| DpnI | GATC | 4 cut(s) | 348, 774, 861, 885 |
| DpnII | GATC | 4 cut(s) | 346, 772, 859, 883 |
| DraIII | CACNNNGTG | 1 cut(s) | 736 |
| Eam1104I | CTCTTC | 1 cut(s) | 662 |
| EarI | CTCTTC | 1 cut(s) | 662 |
| EciI | GGCGGA | 1 cut(s) | 725 |
| Ecl136II | GAGCTC | 1 cut(s) | 368 |
| Eco130I | CCWWGG | 1 cut(s) | 325 |
| Eco24I | GRGCYC | 1 cut(s) | 370 |
| Eco53kI | GAGCTC | 1 cut(s) | 368 |
| Eco57I | CTGAAG | 1 cut(s) | 524 |
| EcoICRI | GAGCTC | 1 cut(s) | 368 |
| EcoRI | GAATTC | 1 cut(s) | 498 |
| EcoRII | CCWGG | 2 cut(s) | 215, 523 |
| EcoT14I | CCWWGG | 1 cut(s) | 325 |
| EcoT22I | ATGCAT | 1 cut(s) | 462 |
| EcoT38I | GRGCYC | 1 cut(s) | 370 |
| ErhI | CCWWGG | 1 cut(s) | 325 |
| FaeI | CATG | 7 cut(s) | 329, 460, 484, 666, 802, 860, 875 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 182, 214 |
| FatI | CATG | 7 cut(s) | 325, 456, 480, 662, 798, 856, 871 |
| FblI | GTMKAC | 1 cut(s) | 620 |
| Fnu4HI | GCNGC | 1 cut(s) | 825 |
| FokI | GGATG | 2 cut(s) | 107, 497 |
| FriOI | GRGCYC | 1 cut(s) | 370 |
| Fsp4HI | GCNGC | 1 cut(s) | 825 |
| FspBI | CTAG | 5 cut(s) | 152, 699, 776, 908, 954 |
| GlaI | GCGC | 1 cut(s) | 392 |
| GluI | GCNGC | 1 cut(s) | 825 |
| GsuI | CTGGAG | 1 cut(s) | 507 |
| HaeII | RGCGCY | 1 cut(s) | 394 |
| HhaI | GCGC | 1 cut(s) | 393 |
| Hin1II | CATG | 7 cut(s) | 329, 460, 484, 666, 802, 860, 875 |
| Hin6I | GCGC | 1 cut(s) | 391 |
| HinP1I | GCGC | 1 cut(s) | 391 |
| HincII | GTYRAC | 2 cut(s) | 270, 621 |
| HindII | GTYRAC | 2 cut(s) | 270, 621 |
| HinfI | GANTC | 4 cut(s) | 231, 448, 475, 844 |
| HphI | GGTGA | 2 cut(s) | 194, 457 |
| Hpy166II | GTNNAC | 2 cut(s) | 270, 621 |
| Hpy188I | TCNGA | 5 cut(s) | 34, 160, 378, 468, 504 |
| Hpy188III | TCNNGA | 3 cut(s) | 260, 344, 563 |
| Hpy8I | GTNNAC | 2 cut(s) | 270, 621 |
| HpyAV | CCTTC | 3 cut(s) | 61, 166, 221 |
| HpyCH4III | ACNGT | 1 cut(s) | 124 |
| HpyCH4IV | ACGT | 3 cut(s) | 423, 694, 769 |
| HpyCH4V | TGCA | 6 cut(s) | 142, 294, 434, 460, 587, 802 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 148, 593 |
| HpyF3I | CTNAG | 7 cut(s) | 31, 159, 199, 336, 705, 755, 867 |
| HpySE526I | ACGT | 3 cut(s) | 423, 694, 769 |
| Hsp92II | CATG | 7 cut(s) | 329, 460, 484, 666, 802, 860, 875 |
| HspAI | GCGC | 1 cut(s) | 391 |
| KpnI | GGTACC | 1 cut(s) | 356 |
| Kzo9I | GATC | 4 cut(s) | 346, 772, 859, 883 |
| LmnI | GCTCC | 1 cut(s) | 526 |
| Lsp1109I | GCAGC | 1 cut(s) | 836 |
| LweI | GCATC | 5 cut(s) | 64, 475, 574, 901, 947 |
| MaeI | CTAG | 5 cut(s) | 152, 699, 776, 908, 954 |
| MaeII | ACGT | 3 cut(s) | 423, 694, 769 |
| MaeIII | GTNAC | 8 cut(s) | 14, 70, 476, 629, 658, 765, 812, 887 |
| MalI | GATC | 4 cut(s) | 348, 774, 861, 885 |
| MboI | GATC | 4 cut(s) | 346, 772, 859, 883 |
| MboII | GAAGA | 1 cut(s) | 679 |
| MhlI | GDGCHC | 1 cut(s) | 370 |
| MluCI | AATT | 5 cut(s) | 81, 204, 498, 652, 743 |
| MlyI | GAGTC | 2 cut(s) | 457, 484 |
| Mph1103I | ATGCAT | 1 cut(s) | 462 |
| MseI | TTAA | 1 cut(s) | 189 |
| MslI | CAYNNNNRTG | 1 cut(s) | 483 |
| MspCI | CTTAAG | 1 cut(s) | 188 |
| MspR9I | CCNGG | 2 cut(s) | 217, 525 |
| MvaI | CCWGG | 2 cut(s) | 217, 525 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 148, 593 |
| NcoI | CCATGG | 1 cut(s) | 325 |
| NdeII | GATC | 4 cut(s) | 346, 772, 859, 883 |
| NheI | GCTAGC | 1 cut(s) | 151 |
| NlaIII | CATG | 7 cut(s) | 329, 460, 484, 666, 802, 860, 875 |
| NlaIV | GGNNCC | 1 cut(s) | 354 |
| NmuCI | GTSAC | 3 cut(s) | 476, 812, 887 |
| NsiI | ATGCAT | 1 cut(s) | 462 |
| NspI | RCATGY | 1 cut(s) | 875 |
| PfeI | GAWTC | 2 cut(s) | 231, 844 |
| PkrI | GCNGC | 1 cut(s) | 826 |
| PleI | GAGTC | 2 cut(s) | 456, 483 |
| PpsI | GAGTC | 2 cut(s) | 456, 483 |
| Ppu21I | YACGTR | 1 cut(s) | 770 |
| PsiI | TTATAA | 2 cut(s) | 896, 942 |
| Psp124BI | GAGCTC | 1 cut(s) | 370 |
| Psp6I | CCWGG | 2 cut(s) | 215, 523 |
| PspGI | CCWGG | 2 cut(s) | 215, 523 |
| PspN4I | GGNNCC | 1 cut(s) | 354 |
| PstI | CTGCAG | 1 cut(s) | 144 |
| RsaI | GTAC | 6 cut(s) | 194, 354, 509, 537, 852, 865 |
| RsaNI | GTAC | 6 cut(s) | 193, 353, 508, 536, 851, 864 |
| RseI | CAYNNNNRTG | 1 cut(s) | 483 |
| SacI | GAGCTC | 1 cut(s) | 370 |
| SalI | GTCGAC | 1 cut(s) | 619 |
| SaqAI | TTAA | 1 cut(s) | 189 |
| SatI | GCNGC | 1 cut(s) | 825 |
| Sau3AI | GATC | 4 cut(s) | 346, 772, 859, 883 |
| ScaI | AGTACT | 3 cut(s) | 194, 509, 537 |
| SchI | GAGTC | 2 cut(s) | 457, 484 |
| ScrFI | CCNGG | 2 cut(s) | 217, 525 |
| SduI | GDGCHC | 1 cut(s) | 370 |
| SfaNI | GCATC | 5 cut(s) | 64, 475, 574, 901, 947 |
| SfcI | CTRYAG | 1 cut(s) | 140 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 483 |
| SmlI | CTYRAG | 3 cut(s) | 50, 188, 563 |
| SmoI | CTYRAG | 3 cut(s) | 50, 188, 563 |
| Sse9I | AATT | 5 cut(s) | 81, 204, 498, 652, 743 |
| SsiI | CCGC | 2 cut(s) | 4, 710 |
| SspMI | CTAG | 5 cut(s) | 152, 699, 776, 908, 954 |
| SstI | GAGCTC | 1 cut(s) | 370 |
| StyD4I | CCNGG | 2 cut(s) | 215, 523 |
| StyI | CCWWGG | 1 cut(s) | 325 |
| TaaI | ACNGT | 1 cut(s) | 124 |
| TaiI | ACGT | 3 cut(s) | 426, 697, 772 |
| TaqI | TCGA | 1 cut(s) | 620 |
| TaqII | GACCGA | 1 cut(s) | 378 |
| TasI | AATT | 5 cut(s) | 81, 204, 498, 652, 743 |
| TatI | WGTACW | 4 cut(s) | 192, 507, 535, 850 |
| TfiI | GAWTC | 2 cut(s) | 231, 844 |
| Tru1I | TTAA | 1 cut(s) | 189 |
| Tru9I | TTAA | 1 cut(s) | 189 |
| TscAI | CASTG | 3 cut(s) | 115, 127, 441 |
| TseFI | GTSAC | 3 cut(s) | 476, 812, 887 |
| TseI | GCWGC | 1 cut(s) | 824 |
| Tsp45I | GTSAC | 3 cut(s) | 476, 812, 887 |
| TspDTI | ATGAA | 3 cut(s) | 185, 445, 772 |
| TspGWI | ACGGA | 1 cut(s) | 747 |
| TspRI | CASTG | 3 cut(s) | 115, 127, 441 |
| Vha464I | CTTAAG | 1 cut(s) | 188 |
| XapI | RAATTY | 1 cut(s) | 498 |
| XceI | RCATGY | 1 cut(s) | 875 |
| XmiI | GTMKAC | 1 cut(s) | 620 |
| XspI | CTAG | 5 cut(s) | 152, 699, 776, 908, 954 |
| ZrmI | AGTACT | 3 cut(s) | 194, 509, 537 |
| Zsp2I | ATGCAT | 1 cut(s) | 462 |