MD11G1138300.v1.1

Reverse transcriptase (RNA-dependent DNA polymerase)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0000071
Physical Location & Seq
Forward (+)
12744701 .. 12747089
2389 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1138300.v1.1.491

Sequence Viewer

Length: 1560 bp
ATGAGTACATATAAGTTGCCGCCAAGGCAAAATCGTGGTGTTCCTCCTGACAGGTTTTCTCCTGAAGGAAAAGTGAAGTATCCAATAGCTCATTATGTGTCATGCTCAAACCTTGCACCAGAACGTCAAGCCTGGGTAAACAATGTGGAAGCAATCCAAGCACCAACCCGAGTTGAGGAGGCCTTGAAGGATCCTAAATGGGCTGCTGCGATGGATGACGAAATGATGGCACTACATAAGAATGATACATGGGAGGTAACGGAGCTACCTAAAGGAAAGAAACCTGTTGGGTGTAGATGGGTCTTTACGATCAAATACAAGGCAGACGGATCGGTAGACAGGTATAAAGCAAGGTTAGTAGCAAAAGGCTATACTCAAACTTATGGTGTTGATTATCAGGAGACATTTTCTCCAGTAGCGAAGATGAATACAGTACGAGTTCTGATTTCTTTAGCTGCAAATTTGAATTGGCCACTAAAACAGTTTGATGTGAAAAATGCTTTTCTTCATGGGCACTTGGAAGAAGAGGTATATATGGATTTTCCTCCGGGGTACGATGCCGGAGGGAAAACCGGAGTATGTAGGTTGCGAAAGTCACTCTACGGACTTAAGCAATCGCCTCGTGCGTGGTTTGGTAGATTTACCCAAGTTATGAGACGAATTGGGTATTATCAAAGTCACTCGGATCATACATTATTTGTGAAACGGGGAAGTGGTAAAGTGACAGCCTTAATTATTTATGTGGATGACATGATAATAACAGGTGATGATTTAGAAGAGATGATGAAGCTAGAACAAAACCTTGCCGCCGAGTTTGAGATGAAGAATTTGGGAGATTTGAAATATTTTCTTGGCGTGGAAGTTGCTCGGTCATCTAGAGGTATTTTCTTGTCTCAGCGTAAATATGTTCTTGATTTGTTAAAGGAAACAGGTATGCTTGGGTGTAAACCTGTGGATACGCCTATTGTGGAGAAACATCACTTAGGGATTTATCCGGATCAAGAACCAGTGGATAAAGGCAGATATCAGAGACTGGTAGGAAGACTAATTTATTTAGCTCATACCCGTCCAGATATAGCCCATGCAGTAAGTGTGGTGAGTCAGTTTATGCACTCGCCAAGTGTGGATCATATGGCTGCTGTTATGCGTATCTTGGCGTATTTAAAGTCCGCCCCAGGGAAAGGAATCTTGTATAGAAATTCTGGTCATCTAAAAATTGAGGGGTTCACTGATGCTGATTGGGCCGGTGATAAACAGAATGTGGTGTCTAGGTCTTCTGCAGAGGCCGAATTCAGAGGTATGGCACATGGAGTGTGTGAAGTTCTTTGGTTACGTAAGTTGCTTTGGGGTCTTGGTTTCAAACCAAAGGAGGCTATAAAGTTGTATTGTGACAATAAGTCGGCACGAGAAATTGCAGAGAACCCGGTACAACATGACAGAACGAAGCATGTGGAGGTTGATCGACATTTCATTAAGGAAAAGCTCGAGAAGAAGATTGTGTCAGTACCATTTGTGAACTCAGAAGAACAGCTTGCCGATATTCTCACTCATGCCGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 Retrotran_gag_3 Retrotrans_gag gag_pre-integrs rve

Protein Analysis

520

Amino Acids

58.97

Weight (kDa)

9.07

Isoelectric Point (pI)

31.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_2 PF07727 81 - 323 8.6e-75 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000071)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G23160 AT4G23160
fragaria_vesca FvH4_2g08111 FvH4_2g17332 FvH4_2g18071 FvH4_2g20531 FvH4_2g20842 FvH4_2g20842 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g24231 FvH4_2g24232 FvH4_3g00831 FvH4_3g00831 FvH4_3g03561 FvH4_3g03561 FvH4_3g10282 FvH4_3g18165 FvH4_3g19021 FvH4_3g24071 FvH4_3g33123 FvH4_3g33970 FvH4_3g38851 FvH4_3g39133 FvH4_3g39271 FvH4_4g00981 FvH4_4g08191 FvH4_4g08311 FvH4_4g08311 FvH4_4g08311 FvH4_4g09341 FvH4_4g12550 FvH4_4g12550 FvH4_4g12550 FvH4_4g13391 FvH4_4g14842 FvH4_4g27901 FvH4_5g11561 FvH4_5g15611 FvH4_5g17991 FvH4_5g27871 FvH4_5g29995 FvH4_5g39662 FvH4_6g02392 FvH4_6g12781 FvH4_6g20106 FvH4_6g20106 FvH4_6g20106 FvH4_6g30872 FvH4_6g34901 FvH4_6g35632 FvH4_6g36661 FvH4_6g43795 FvH4_6g44611 FvH4_7g01791 FvH4_7g04041 FvH4_7g12551 FvH4_7g23351
malus_domestica MD00G1134200.v1.1 MD01G1096500.v1.1 MD01G1128200.v1.1 MD02G1250500.v1.1 MD02G1294900.v1.1 MD03G1121800.v1.1 MD04G1021400.v1.1 MD04G1051100.v1.1 MD04G1051300.v1.1 MD04G1099000.v1.1 MD05G1047900.v1.1 MD05G1298000.v1.1 MD06G1064200.v1.1 MD06G1120600.v1.1 MD07G1013900.v1.1 MD09G1226900.v1.1 MD10G1196700.v1.1 MD10G1307000.v1.1 MD10G1338900.v1.1 MD11G1107300.v1.1 MD11G1138300.v1.1 MD11G1236700.v1.1 MD12G1032500.v1.1 MD12G1150100.v1.1 MD12G1247800.v1.1 MD17G1267900.v1.1
pyrus_communis pycom02g03660 pycom02g13370 pycom02g14840 pycom02g18400 pycom02g18880 pycom02g22740 pycom04g08800 pycom04g15770 pycom05g07980 pycom05g19640 pycom06g09360 pycom07g13160 pycom08g11820 pycom08g21740 pycom09g19980 pycom10g04810 pycom10g05420 pycom10g14650 pycom11g03140 pycom11g21550 pycom12g14740 pycom13g01600 pycom13g29510 pycom14g07060 pycom15g01990 pycom15g19850 pycom15g30860 pycom16g15290 pycom16g16250 pycom16g25390 pycom17g17270 pycom520g00070
rosa_chinensis RchiOBHm_Chr1g0316691 RchiOBHm_Chr1g0320751 RchiOBHm_Chr1g0320771 RchiOBHm_Chr1g0322231 RchiOBHm_Chr1g0322861 RchiOBHm_Chr1g0328471 RchiOBHm_Chr1g0333321 RchiOBHm_Chr1g0337871 RchiOBHm_Chr1g0339051 RchiOBHm_Chr1g0349861 RchiOBHm_Chr1g0361951 RchiOBHm_Chr1g0365931 RchiOBHm_Chr1g0365981 RchiOBHm_Chr1g0377711 RchiOBHm_Chr1g0381581 RchiOBHm_Chr1g0382741 RchiOBHm_Chr1g0383501 RchiOBHm_Chr2g0101201 RchiOBHm_Chr2g0113601 RchiOBHm_Chr2g0124031 RchiOBHm_Chr2g0135481 RchiOBHm_Chr2g0148361 RchiOBHm_Chr2g0150101 RchiOBHm_Chr2g0154181 RchiOBHm_Chr2g0156071 RchiOBHm_Chr2g0166521 RchiOBHm_Chr2g0166821 RchiOBHm_Chr3g0448011 RchiOBHm_Chr3g0450941 RchiOBHm_Chr3g0450961 RchiOBHm_Chr3g0451051 RchiOBHm_Chr3g0451721 RchiOBHm_Chr3g0453371 RchiOBHm_Chr3g0454881 RchiOBHm_Chr3g0457421 RchiOBHm_Chr3g0457661 RchiOBHm_Chr3g0460011 RchiOBHm_Chr3g0461531 RchiOBHm_Chr3g0461981 RchiOBHm_Chr3g0463471 RchiOBHm_Chr3g0466641 RchiOBHm_Chr3g0468181 RchiOBHm_Chr3g0483351 RchiOBHm_Chr4g0394001 RchiOBHm_Chr4g0397261 RchiOBHm_Chr4g0404531 RchiOBHm_Chr4g0410841 RchiOBHm_Chr4g0415501 RchiOBHm_Chr4g0425221 RchiOBHm_Chr4g0430811 RchiOBHm_Chr5g0010831 RchiOBHm_Chr5g0016831 RchiOBHm_Chr5g0016851 RchiOBHm_Chr5g0031351 RchiOBHm_Chr5g0032151 RchiOBHm_Chr5g0041201 RchiOBHm_Chr5g0042191 RchiOBHm_Chr5g0064121 RchiOBHm_Chr5g0066601 RchiOBHm_Chr5g0078371 RchiOBHm_Chr5g0079271 RchiOBHm_Chr6g0263751 RchiOBHm_Chr6g0285111 RchiOBHm_Chr6g0298961 RchiOBHm_Chr6g0300481 RchiOBHm_Chr6g0303211 RchiOBHm_Chr7g0192341 RchiOBHm_Chr7g0196171 RchiOBHm_Chr7g0200281 RchiOBHm_Chr7g0200551 RchiOBHm_Chr7g0207611 RchiOBHm_Chr7g0212421 RchiOBHm_Chr7g0214991 RchiOBHm_Chr7g0219211 RchiOBHm_Chr7g0242371
rosa_laevigata RLG00000002389 RLG00000007980
rosa_roxburghii Rroxscaffold_1G00053480 Rroxscaffold_2G00090890 Rroxscaffold_2G00099660 Rroxscaffold_2G00134510 Rroxscaffold_3G00221450 Rroxscaffold_3G00240550 Rroxscaffold_4G00305710 Rroxscaffold_4G00306360 Rroxscaffold_4G00306800 Rroxscaffold_4G00329090 Rroxscaffold_5G00382750 Rroxscaffold_5G00385900 Rroxscaffold_6G00403080 Rroxscaffold_7G00172890 Rroxscaffold_7G00186690
rosa_samantha Rh1DG425600
rosa_wichuraiana Rw0G001640 Rw0G009160 Rw0G010480 Rw0G010520 Rw0G013850 Rw0G017170 Rw0G018520 Rw0G019280 Rw0G022780 Rw1G000360 Rw1G001410 Rw1G001630 Rw1G002100 Rw1G006810 Rw1G010680 Rw1G012700 Rw1G016160 Rw1G022180 Rw1G023580 Rw1G025640 Rw1G026310 Rw1G027230 Rw1G028110 Rw1G034180 Rw2G004990 Rw2G005840 Rw2G007350 Rw2G024730 Rw2G025580 Rw2G026670 Rw2G027210 Rw2G029060 Rw2G031560 Rw2G042190 Rw2G043850 Rw2G045990 Rw2G046130 Rw2G049290 Rw2G049310 Rw2G049790 Rw2G052250 Rw3G004350 Rw3G013100 Rw3G015280 Rw3G015720 Rw3G024630 Rw3G026470 Rw3G027840 Rw3G028960 Rw3G029130 Rw3G029160 Rw4G000280 Rw4G006650 Rw4G008970 Rw4G009310 Rw4G011730 Rw4G012000 Rw4G012610 Rw4G014300 Rw4G014690 Rw4G015190 Rw4G016470 Rw4G020750 Rw4G025060 Rw4G025080 Rw5G005610 Rw5G010380 Rw5G013970 Rw5G015130 Rw5G015250 Rw5G017640 Rw5G019910 Rw5G022410 Rw5G023550 Rw5G029710 Rw5G037650 Rw5G038280 Rw5G038570 Rw5G041550 Rw5G042600 Rw5G043910 Rw5G047850 Rw5G048200 Rw5G049920 Rw6G000260 Rw6G000530 Rw6G001710 Rw6G005090 Rw6G006730 Rw6G009310 Rw6G010950 Rw6G011630 Rw6G012080 Rw6G012750 Rw6G015970 Rw6G020700 Rw6G024350 Rw7G008540 Rw7G016620 Rw7G019400 Rw7G020010 Rw7G024240 Rw7G025630 Rw7G027550 Rw7G027770 Rw7G027960 Rw7G028450 Rw7G031280 Rw7G031970 Rw7G032180 Rw7G033590 Rw7G033720 Rw7G033890 Rw7G041800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 336
AccIII TCCGGA 1 cut(s) 994
AciI CCGC 3 cut(s) 20, 807, 1170
AclWI GGATC 6 cut(s) 185, 198, 337, 693, 1005, 1134
AcoI YGGCCR 1 cut(s) 470
AcsI RAATTY 4 cut(s) 460, 826, 1198, 1289
AcuI CTGAAG 1 cut(s) 84
AfaI GTAC 5 cut(s) 7, 435, 554, 1428, 1506
AfiI CCNNNNNNNGG 3 cut(s) 175, 1176, 1181
AflII CTTAAG 1 cut(s) 608
AgsI TTSAA 4 cut(s) 187, 466, 841, 1360
AhdI GACNNNNNGTC 1 cut(s) 1396
AjnI CCWGG 2 cut(s) 131, 1174
AluBI AGCT 7 cut(s) 89, 265, 455, 790, 1058, 1483, 1531
AluI AGCT 7 cut(s) 89, 265, 455, 790, 1058, 1483, 1531
Alw26I GTCTC 4 cut(s) 395, 649, 897, 1024
AlwI GGATC 6 cut(s) 185, 198, 337, 693, 1005, 1134
AlwNI CAGNNNCTG 1 cut(s) 1033
Ama87I CYCGRG 2 cut(s) 168, 1484
Aor13HI TCCGGA 1 cut(s) 994
AoxI GGCC 4 cut(s) 180, 470, 1242, 1284
ApeKI GCWGC 4 cut(s) 203, 206, 455, 1136
ApoI RAATTY 4 cut(s) 460, 826, 1198, 1289
AspS9I GGNCC 1 cut(s) 1242
AsuC2I CCSGG 2 cut(s) 549, 1424
AsuHPI GGTGA 3 cut(s) 776, 1108, 1259
AvaI CYCGRG 2 cut(s) 168, 1484
BaeGI GKGCMC 1 cut(s) 516
BalI TGGCCA 1 cut(s) 472
BamHI GGATCC 1 cut(s) 190
BauI CACGAG 2 cut(s) 621, 1404
BbsI GAAGAC 2 cut(s) 1048, 1266
BbvI GCAGC 4 cut(s) 190, 193, 442, 1123
BccI CCATC 3 cut(s) 205, 220, 291
BceAI ACGGC 1 cut(s) 1538
BcgI CGANNNNNNTGC 4 cut(s) 312, 346, 602, 636
BciT130I CCWGG 2 cut(s) 133, 1176
BciVI GTATCC 2 cut(s) 90, 949
BcnI CCSGG 2 cut(s) 549, 1424
BcoDI GTCTC 4 cut(s) 395, 649, 897, 1024
BfaI CTAG 3 cut(s) 791, 876, 1269
BfmI CTRYAG 1 cut(s) 1278
BfrI CTTAAG 1 cut(s) 608
BfuI GTATCC 2 cut(s) 90, 949
BglI GCCNNNNNGGC 1 cut(s) 25
BisI GCNGC 6 cut(s) 20, 204, 207, 456, 807, 1137
BlsI GCNGC 6 cut(s) 21, 205, 208, 457, 808, 1138
Bme1390I CCNGG 4 cut(s) 133, 549, 1176, 1424
BmeRI GACNNNNNGTC 1 cut(s) 1396
BmeT110I CYCGRG 2 cut(s) 168, 1484
BmgT120I GGNCC 1 cut(s) 1242
BmiI GGNNCC 1 cut(s) 192
BmrFI CCNGG 4 cut(s) 133, 549, 1176, 1424
BmsI GCATC 2 cut(s) 547, 1222
BpiI GAAGAC 2 cut(s) 1048, 1266
BpmI CTGGAG 1 cut(s) 396
BpuMI CCSGG 2 cut(s) 549, 1424
BsaAI YACGTR 1 cut(s) 1334
BsaJI CCNNGG 5 cut(s) 23, 132, 548, 1174, 1175
BsaWI WCCGGW 2 cut(s) 572, 994
BsaXI ACNNNNNCTCC 2 cut(s) 394, 424
Bsc4I CCNNNNNNNGG 3 cut(s) 175, 1176, 1181
Bse118I RCCGGY 1 cut(s) 1244
Bse1I ACTGG 3 cut(s) 413, 1007, 1038
BseAI TCCGGA 1 cut(s) 994
BseBI CCWGG 2 cut(s) 133, 1176
BseDI CCNNGG 5 cut(s) 23, 132, 548, 1174, 1175
BseGI GGATG 2 cut(s) 220, 751
BseLI CCNNNNNNNGG 3 cut(s) 175, 1176, 1181
BseMII CTCAG 2 cut(s) 908, 1533
BseNI ACTGG 3 cut(s) 413, 1007, 1038
BseRI GAGGAG 1 cut(s) 191
BseSI GKGCMC 1 cut(s) 516
BseXI GCAGC 4 cut(s) 190, 193, 442, 1123
BshFI GGCC 4 cut(s) 182, 472, 1244, 1286
BsiHKCI CYCGRG 2 cut(s) 168, 1484
BsiSI CCGG 6 cut(s) 548, 561, 573, 995, 1245, 1424
BslI CCNNNNNNNGG 3 cut(s) 175, 1176, 1181
BsmAI GTCTC 4 cut(s) 395, 649, 897, 1024
BsmBI CGTCTC 1 cut(s) 649
BsnI GGCC 4 cut(s) 182, 472, 1244, 1286
BsoBI CYCGRG 2 cut(s) 168, 1484
Bsp1286I GDGCHC 1 cut(s) 516
Bsp13I TCCGGA 1 cut(s) 994
Bsp143I GATC 7 cut(s) 190, 309, 329, 685, 997, 1126, 1459
BspACI CCGC 3 cut(s) 20, 807, 1170
BspANI GGCC 4 cut(s) 182, 472, 1244, 1286
BspCNI CTCAG 2 cut(s) 907, 1532
BspEI TCCGGA 1 cut(s) 994
BspLI GGNNCC 1 cut(s) 192
BspMAI CTGCAG 1 cut(s) 1282
BspPI GGATC 6 cut(s) 185, 198, 337, 693, 1005, 1134
BspTI CTTAAG 1 cut(s) 608
BsrFI RCCGGY 1 cut(s) 1244
BsrI ACTGG 3 cut(s) 413, 1007, 1038
BssAI RCCGGY 1 cut(s) 1244
BssECI CCNNGG 5 cut(s) 23, 132, 548, 1174, 1175
BssMI GATC 7 cut(s) 190, 309, 329, 685, 997, 1126, 1459
BssSI CACGAG 2 cut(s) 621, 1404
BssT1I CCWWGG 1 cut(s) 23
Bst2BI CACGAG 2 cut(s) 621, 1404
Bst2UI CCWGG 2 cut(s) 133, 1176
Bst4CI ACNGT 2 cut(s) 433, 483
Bst6I CTCTTC 2 cut(s) 519, 771
BstAFI CTTAAG 1 cut(s) 608
BstBAI YACGTR 1 cut(s) 1334
BstC8I GCNNGC 1 cut(s) 1533
BstDEI CTNAG 3 cut(s) 894, 982, 1519
BstF5I GGATG 2 cut(s) 220, 751
BstKTI GATC 7 cut(s) 193, 312, 332, 688, 1000, 1129, 1462
BstMAI GTCTC 4 cut(s) 395, 649, 897, 1024
BstMBI GATC 7 cut(s) 190, 309, 329, 685, 997, 1126, 1459
BstMWI GCNNNNNNNGC 3 cut(s) 25, 158, 1241
BstNI CCWGG 2 cut(s) 133, 1176
BstNSI RCATGY 1 cut(s) 1451
BstSCI CCNGG 4 cut(s) 131, 547, 1174, 1422
BstSFI CTRYAG 1 cut(s) 1278
BstSLI GKGCMC 1 cut(s) 516
BstSNI TACGTA 1 cut(s) 1334
BstV1I GCAGC 4 cut(s) 190, 193, 442, 1123
BstV2I GAAGAC 2 cut(s) 1048, 1266
BstX2I RGATCY 1 cut(s) 190
BstYI RGATCY 1 cut(s) 190
BsuI GTATCC 2 cut(s) 90, 949
BsuRI GGCC 4 cut(s) 182, 472, 1244, 1286
BtgZI GCGATG 1 cut(s) 224
BtsCI GGATG 2 cut(s) 220, 751
BtsIMutI CAGTG 2 cut(s) 1014, 1227
Cac8I GCNNGC 1 cut(s) 1533
CaiI CAGNNNCTG 1 cut(s) 1033
Cfr10I RCCGGY 1 cut(s) 1244
Cfr13I GGNCC 1 cut(s) 1242
Csp6I GTAC 5 cut(s) 6, 434, 553, 1427, 1505
CviAII CATG 9 cut(s) 102, 249, 509, 751, 1082, 1307, 1433, 1448, 1550
CviQI GTAC 5 cut(s) 6, 434, 553, 1427, 1505
DdeI CTNAG 3 cut(s) 894, 982, 1519
DpnI GATC 7 cut(s) 192, 311, 331, 687, 999, 1128, 1461
DpnII GATC 7 cut(s) 190, 309, 329, 685, 997, 1126, 1459
DraI TTTAAA 1 cut(s) 1164
DriI GACNNNNNGTC 1 cut(s) 1396
EaeI YGGCCR 1 cut(s) 470
Eam1104I CTCTTC 2 cut(s) 519, 771
Eam1105I GACNNNNNGTC 1 cut(s) 1396
EarI CTCTTC 2 cut(s) 519, 771
EciI GGCGGA 1 cut(s) 1159
Eco105I TACGTA 1 cut(s) 1334
Eco130I CCWWGG 1 cut(s) 23
Eco147I AGGCCT 1 cut(s) 182
Eco32I GATATC 1 cut(s) 1025
Eco57I CTGAAG 1 cut(s) 84
Eco88I CYCGRG 2 cut(s) 168, 1484
EcoRI GAATTC 1 cut(s) 1289
EcoRII CCWGG 2 cut(s) 131, 1174
EcoRV GATATC 1 cut(s) 1025
EcoT14I CCWWGG 1 cut(s) 23
ErhI CCWWGG 1 cut(s) 23
Esp3I CGTCTC 1 cut(s) 649
FaeI CATG 9 cut(s) 105, 252, 512, 754, 1085, 1310, 1436, 1451, 1553
FalI AAGNNNNNCTT 2 cut(s) 1515, 1547
FatI CATG 9 cut(s) 101, 248, 508, 750, 1081, 1306, 1432, 1447, 1549
FauNDI CATATG 1 cut(s) 1131
FblI GTMKAC 1 cut(s) 336
Fnu4HI GCNGC 6 cut(s) 20, 204, 207, 456, 807, 1137
FokI GGATG 2 cut(s) 227, 758
Fsp4HI GCNGC 6 cut(s) 20, 204, 207, 456, 807, 1137
FspBI CTAG 3 cut(s) 791, 876, 1269
GluI GCNGC 6 cut(s) 20, 204, 207, 456, 807, 1137
GsuI CTGGAG 1 cut(s) 396
HaeIII GGCC 4 cut(s) 182, 472, 1244, 1286
HapII CCGG 6 cut(s) 548, 561, 573, 995, 1245, 1424
Hin1II CATG 9 cut(s) 105, 252, 512, 754, 1085, 1310, 1436, 1451, 1553
HinfI GANTC 2 cut(s) 1099, 1185
HpaII CCGG 6 cut(s) 548, 561, 573, 995, 1245, 1424
HphI GGTGA 3 cut(s) 776, 1108, 1259
Hpy166II GTNNAC 5 cut(s) 139, 337, 947, 1227, 1516
Hpy188I TCNGA 5 cut(s) 444, 685, 1029, 1295, 1522
Hpy188III TCNNGA 9 cut(s) 47, 62, 398, 876, 911, 995, 1001, 1070, 1486
Hpy8I GTNNAC 5 cut(s) 139, 337, 947, 1227, 1516
HpyAV CCTTC 2 cut(s) 59, 181
HpyCH4III ACNGT 2 cut(s) 433, 483
HpyCH4IV ACGT 2 cut(s) 124, 1333
HpyCH4V TGCA 6 cut(s) 116, 458, 1085, 1111, 1280, 1415
HpyF10VI GCNNNNNNNGC 3 cut(s) 25, 158, 1241
HpyF3I CTNAG 3 cut(s) 894, 982, 1519
HpySE526I ACGT 2 cut(s) 124, 1333
Hsp92II CATG 9 cut(s) 105, 252, 512, 754, 1085, 1310, 1436, 1451, 1553
Kpn2I TCCGGA 1 cut(s) 994
Kzo9I GATC 7 cut(s) 190, 309, 329, 685, 997, 1126, 1459
LmnI GCTCC 1 cut(s) 262
Lsp1109I GCAGC 4 cut(s) 190, 193, 442, 1123
LweI GCATC 2 cut(s) 547, 1222
MaeI CTAG 3 cut(s) 791, 876, 1269
MaeII ACGT 2 cut(s) 124, 1333
MaeIII GTNAC 6 cut(s) 256, 594, 677, 721, 1329, 1388
MalI GATC 7 cut(s) 192, 311, 331, 687, 999, 1128, 1461
MboI GATC 7 cut(s) 190, 309, 329, 685, 997, 1126, 1459
MflI RGATCY 1 cut(s) 190
MhlI GDGCHC 1 cut(s) 516
MlsI TGGCCA 1 cut(s) 472
MluNI TGGCCA 1 cut(s) 472
MlyI GAGTC 1 cut(s) 1108
Mox20I TGGCCA 1 cut(s) 472
MroI TCCGGA 1 cut(s) 994
MscI TGGCCA 1 cut(s) 472
MseI TTAA 5 cut(s) 609, 731, 920, 1163, 1473
MslI CAYNNNNRTG 1 cut(s) 240
Msp20I TGGCCA 1 cut(s) 472
MspCI CTTAAG 1 cut(s) 608
MspI CCGG 6 cut(s) 548, 561, 573, 995, 1245, 1424
MspR9I CCNGG 4 cut(s) 133, 549, 1176, 1424
MvaI CCWGG 2 cut(s) 133, 1176
MwoI GCNNNNNNNGC 3 cut(s) 25, 158, 1241
NciI CCSGG 2 cut(s) 549, 1424
NdeI CATATG 1 cut(s) 1131
NdeII GATC 7 cut(s) 190, 309, 329, 685, 997, 1126, 1459
NlaIII CATG 9 cut(s) 105, 252, 512, 754, 1085, 1310, 1436, 1451, 1553
NlaIV GGNNCC 1 cut(s) 192
NmeAIII GCCGAG 1 cut(s) 835
NmuCI GTSAC 4 cut(s) 594, 677, 721, 1388
NspI RCATGY 1 cut(s) 1451
PaeR7I CTCGAG 1 cut(s) 1484
PasI CCCWGGG 1 cut(s) 1175
PceI AGGCCT 1 cut(s) 182
PcsI WCGNNNNNNNCGW 1 cut(s) 623
PfeI GAWTC 1 cut(s) 1185
PkrI GCNGC 6 cut(s) 21, 205, 208, 457, 808, 1138
PleI GAGTC 1 cut(s) 1107
PpsI GAGTC 1 cut(s) 1107
Ppu21I YACGTR 1 cut(s) 1334
Psp6I CCWGG 2 cut(s) 131, 1174
PspGI CCWGG 2 cut(s) 131, 1174
PspN4I GGNNCC 1 cut(s) 192
PspPI GGNCC 1 cut(s) 1242
PstI CTGCAG 1 cut(s) 1282
PstNI CAGNNNCTG 1 cut(s) 1033
PsuI RGATCY 1 cut(s) 190
RsaI GTAC 5 cut(s) 7, 435, 554, 1428, 1506
RsaNI GTAC 5 cut(s) 6, 434, 553, 1427, 1505
RseI CAYNNNNRTG 1 cut(s) 240
SaqAI TTAA 5 cut(s) 609, 731, 920, 1163, 1473
SatI GCNGC 6 cut(s) 20, 204, 207, 456, 807, 1137
Sau3AI GATC 7 cut(s) 190, 309, 329, 685, 997, 1126, 1459
Sau96I GGNCC 1 cut(s) 1242
SchI GAGTC 1 cut(s) 1108
ScrFI CCNGG 4 cut(s) 133, 549, 1176, 1424
SduI GDGCHC 1 cut(s) 516
SfaNI GCATC 2 cut(s) 547, 1222
SfcI CTRYAG 1 cut(s) 1278
Sfr274I CTCGAG 1 cut(s) 1484
SlaI CTCGAG 1 cut(s) 1484
SmiMI CAYNNNNRTG 1 cut(s) 240
SmlI CTYRAG 2 cut(s) 608, 1484
SmoI CTYRAG 2 cut(s) 608, 1484
SnaBI TACGTA 1 cut(s) 1334
SseBI AGGCCT 1 cut(s) 182
SsiI CCGC 3 cut(s) 20, 807, 1170
SspI AATATT 1 cut(s) 845
SspMI CTAG 3 cut(s) 791, 876, 1269
StuI AGGCCT 1 cut(s) 182
StyD4I CCNGG 4 cut(s) 131, 547, 1174, 1422
StyI CCWWGG 1 cut(s) 23
TaaI ACNGT 2 cut(s) 433, 483
TaiI ACGT 2 cut(s) 127, 1336
TaqI TCGA 2 cut(s) 1462, 1485
TaqII GACCGA 1 cut(s) 858
TatI WGTACW 1 cut(s) 5
TauI GCSGC 2 cut(s) 22, 809
TfiI GAWTC 1 cut(s) 1185
Tru1I TTAA 5 cut(s) 609, 731, 920, 1163, 1473
Tru9I TTAA 5 cut(s) 609, 731, 920, 1163, 1473
TscAI CASTG 2 cut(s) 1014, 1234
TseFI GTSAC 4 cut(s) 594, 677, 721, 1388
TseI GCWGC 4 cut(s) 203, 206, 455, 1136
Tsp45I GTSAC 4 cut(s) 594, 677, 721, 1388
TspDTI ATGAA 5 cut(s) 440, 497, 800, 836, 1459
TspGWI ACGGA 3 cut(s) 275, 342, 618
TspRI CASTG 2 cut(s) 1014, 1234
Vha464I CTTAAG 1 cut(s) 608
XapI RAATTY 4 cut(s) 460, 826, 1198, 1289
XbaI TCTAGA 1 cut(s) 875
XceI RCATGY 1 cut(s) 1451
XhoI CTCGAG 1 cut(s) 1484
XmiI GTMKAC 1 cut(s) 336
XspI CTAG 3 cut(s) 791, 876, 1269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.