Rroxscaffold_2G00090890

Reverse transcriptase (RNA-dependent DNA polymerase)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000071
Physical Location & Seq
Reverse (-)
12587612 .. 12589490
1879 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00090890.1

Sequence Viewer

Length: 741 bp
ATGGGACAATTGAAGTACTTTCTTGGGATAGAAGTAGCGAGGTCTAAGCAAGGAATTACTTTATGTCAAAGGAACTATGCATTAGAAGTTCTTGAATATACGGGGTTCCTTGGAGCCAAGCCCTCACGGTTTTCGGTTGAACAAAACATAACACTCACACAAGGAGGTGGAACCTTGCCGAGAGATGCATCCCAATATCGAAGACTTGTGGGAAGACTTATTTACCTCACTATCACAAGGCCGGACCTTGTGTATGCTGTTCACATACTAAGCCAATTCATGGACAACCCCAAGCAGCCGCACCTTGAAGCAGCGCATAAAATGTTGAGGTATATTAAGCAAACGCCCGGTCAAGGAATATTCCCGCCTTCCACGGGGCCATTGGAACCGAGGGCATACCGCGATGAGGACTGGGCTCGTTGTAAGGACACTAGAAGATCAATAACTGGTTATTGCATCTTTCTTGGCAATGCGCCCATCTCATGGAAGATGATGAAGCAAAGCACGGTGGCACGATCAAGCGCGGAAGCCGAGTATCGTTCCATGGCCACCACATGTTGTGAAATAACATGGTTGCGAAACATATTGAGGGATTTGAACGTTGGACATACACAACTAGTAAGATTATTCTGTGACAATCAAGCCGCCATACACATAGCACCAAATCCTGTGTTCCATGAACGCACGAAGTATATAGAGATTGATCGCCATGTTGTGCGTGAAAAGGTGCGAGAGGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2

Protein Analysis

246

Amino Acids

28.25

Weight (kDa)

9.42

Isoelectric Point (pI)

53.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000071)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G23160 AT4G23160
fragaria_vesca FvH4_2g08111 FvH4_2g17332 FvH4_2g18071 FvH4_2g20531 FvH4_2g20842 FvH4_2g20842 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g24231 FvH4_2g24232 FvH4_3g00831 FvH4_3g00831 FvH4_3g03561 FvH4_3g03561 FvH4_3g10282 FvH4_3g18165 FvH4_3g19021 FvH4_3g24071 FvH4_3g33123 FvH4_3g33970 FvH4_3g38851 FvH4_3g39133 FvH4_3g39271 FvH4_4g00981 FvH4_4g08191 FvH4_4g08311 FvH4_4g08311 FvH4_4g08311 FvH4_4g09341 FvH4_4g12550 FvH4_4g12550 FvH4_4g12550 FvH4_4g13391 FvH4_4g14842 FvH4_4g27901 FvH4_5g11561 FvH4_5g15611 FvH4_5g17991 FvH4_5g27871 FvH4_5g29995 FvH4_5g39662 FvH4_6g02392 FvH4_6g12781 FvH4_6g20106 FvH4_6g20106 FvH4_6g20106 FvH4_6g30872 FvH4_6g34901 FvH4_6g35632 FvH4_6g36661 FvH4_6g43795 FvH4_6g44611 FvH4_7g01791 FvH4_7g04041 FvH4_7g12551 FvH4_7g23351
malus_domestica MD00G1134200.v1.1 MD01G1096500.v1.1 MD01G1128200.v1.1 MD02G1250500.v1.1 MD02G1294900.v1.1 MD03G1121800.v1.1 MD04G1021400.v1.1 MD04G1051100.v1.1 MD04G1051300.v1.1 MD04G1099000.v1.1 MD05G1047900.v1.1 MD05G1298000.v1.1 MD06G1064200.v1.1 MD06G1120600.v1.1 MD07G1013900.v1.1 MD09G1226900.v1.1 MD10G1196700.v1.1 MD10G1307000.v1.1 MD10G1338900.v1.1 MD11G1107300.v1.1 MD11G1138300.v1.1 MD11G1236700.v1.1 MD12G1032500.v1.1 MD12G1150100.v1.1 MD12G1247800.v1.1 MD17G1267900.v1.1
pyrus_communis pycom02g03660 pycom02g13370 pycom02g14840 pycom02g18400 pycom02g18880 pycom02g22740 pycom04g08800 pycom04g15770 pycom05g07980 pycom05g19640 pycom06g09360 pycom07g13160 pycom08g11820 pycom08g21740 pycom09g19980 pycom10g04810 pycom10g05420 pycom10g14650 pycom11g03140 pycom11g21550 pycom12g14740 pycom13g01600 pycom13g29510 pycom14g07060 pycom15g01990 pycom15g19850 pycom15g30860 pycom16g15290 pycom16g16250 pycom16g25390 pycom17g17270 pycom520g00070
rosa_chinensis RchiOBHm_Chr1g0316691 RchiOBHm_Chr1g0320751 RchiOBHm_Chr1g0320771 RchiOBHm_Chr1g0322231 RchiOBHm_Chr1g0322861 RchiOBHm_Chr1g0328471 RchiOBHm_Chr1g0333321 RchiOBHm_Chr1g0337871 RchiOBHm_Chr1g0339051 RchiOBHm_Chr1g0349861 RchiOBHm_Chr1g0361951 RchiOBHm_Chr1g0365931 RchiOBHm_Chr1g0365981 RchiOBHm_Chr1g0377711 RchiOBHm_Chr1g0381581 RchiOBHm_Chr1g0382741 RchiOBHm_Chr1g0383501 RchiOBHm_Chr2g0101201 RchiOBHm_Chr2g0113601 RchiOBHm_Chr2g0124031 RchiOBHm_Chr2g0135481 RchiOBHm_Chr2g0148361 RchiOBHm_Chr2g0150101 RchiOBHm_Chr2g0154181 RchiOBHm_Chr2g0156071 RchiOBHm_Chr2g0166521 RchiOBHm_Chr2g0166821 RchiOBHm_Chr3g0448011 RchiOBHm_Chr3g0450941 RchiOBHm_Chr3g0450961 RchiOBHm_Chr3g0451051 RchiOBHm_Chr3g0451721 RchiOBHm_Chr3g0453371 RchiOBHm_Chr3g0454881 RchiOBHm_Chr3g0457421 RchiOBHm_Chr3g0457661 RchiOBHm_Chr3g0460011 RchiOBHm_Chr3g0461531 RchiOBHm_Chr3g0461981 RchiOBHm_Chr3g0463471 RchiOBHm_Chr3g0466641 RchiOBHm_Chr3g0468181 RchiOBHm_Chr3g0483351 RchiOBHm_Chr4g0394001 RchiOBHm_Chr4g0397261 RchiOBHm_Chr4g0404531 RchiOBHm_Chr4g0410841 RchiOBHm_Chr4g0415501 RchiOBHm_Chr4g0425221 RchiOBHm_Chr4g0430811 RchiOBHm_Chr5g0010831 RchiOBHm_Chr5g0016831 RchiOBHm_Chr5g0016851 RchiOBHm_Chr5g0031351 RchiOBHm_Chr5g0032151 RchiOBHm_Chr5g0041201 RchiOBHm_Chr5g0042191 RchiOBHm_Chr5g0064121 RchiOBHm_Chr5g0066601 RchiOBHm_Chr5g0078371 RchiOBHm_Chr5g0079271 RchiOBHm_Chr6g0263751 RchiOBHm_Chr6g0285111 RchiOBHm_Chr6g0298961 RchiOBHm_Chr6g0300481 RchiOBHm_Chr6g0303211 RchiOBHm_Chr7g0192341 RchiOBHm_Chr7g0196171 RchiOBHm_Chr7g0200281 RchiOBHm_Chr7g0200551 RchiOBHm_Chr7g0207611 RchiOBHm_Chr7g0212421 RchiOBHm_Chr7g0214991 RchiOBHm_Chr7g0219211 RchiOBHm_Chr7g0242371
rosa_laevigata RLG00000002389 RLG00000007980
rosa_roxburghii Rroxscaffold_1G00053480 Rroxscaffold_2G00090890 Rroxscaffold_2G00099660 Rroxscaffold_2G00134510 Rroxscaffold_3G00221450 Rroxscaffold_3G00240550 Rroxscaffold_4G00305710 Rroxscaffold_4G00306360 Rroxscaffold_4G00306800 Rroxscaffold_4G00329090 Rroxscaffold_5G00382750 Rroxscaffold_5G00385900 Rroxscaffold_6G00403080 Rroxscaffold_7G00172890 Rroxscaffold_7G00186690
rosa_samantha Rh1DG425600
rosa_wichuraiana Rw0G001640 Rw0G009160 Rw0G010480 Rw0G010520 Rw0G013850 Rw0G017170 Rw0G018520 Rw0G019280 Rw0G022780 Rw1G000360 Rw1G001410 Rw1G001630 Rw1G002100 Rw1G006810 Rw1G010680 Rw1G012700 Rw1G016160 Rw1G022180 Rw1G023580 Rw1G025640 Rw1G026310 Rw1G027230 Rw1G028110 Rw1G034180 Rw2G004990 Rw2G005840 Rw2G007350 Rw2G024730 Rw2G025580 Rw2G026670 Rw2G027210 Rw2G029060 Rw2G031560 Rw2G042190 Rw2G043850 Rw2G045990 Rw2G046130 Rw2G049290 Rw2G049310 Rw2G049790 Rw2G052250 Rw3G004350 Rw3G013100 Rw3G015280 Rw3G015720 Rw3G024630 Rw3G026470 Rw3G027840 Rw3G028960 Rw3G029130 Rw3G029160 Rw4G000280 Rw4G006650 Rw4G008970 Rw4G009310 Rw4G011730 Rw4G012000 Rw4G012610 Rw4G014300 Rw4G014690 Rw4G015190 Rw4G016470 Rw4G020750 Rw4G025060 Rw4G025080 Rw5G005610 Rw5G010380 Rw5G013970 Rw5G015130 Rw5G015250 Rw5G017640 Rw5G019910 Rw5G022410 Rw5G023550 Rw5G029710 Rw5G037650 Rw5G038280 Rw5G038570 Rw5G041550 Rw5G042600 Rw5G043910 Rw5G047850 Rw5G048200 Rw5G049920 Rw6G000260 Rw6G000530 Rw6G001710 Rw6G005090 Rw6G006730 Rw6G009310 Rw6G010950 Rw6G011630 Rw6G012080 Rw6G012750 Rw6G015970 Rw6G020700 Rw6G024350 Rw7G008540 Rw7G016620 Rw7G019400 Rw7G020010 Rw7G024240 Rw7G025630 Rw7G027550 Rw7G027770 Rw7G027960 Rw7G028450 Rw7G031280 Rw7G031970 Rw7G032180 Rw7G033590 Rw7G033720 Rw7G033890 Rw7G041800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 280, 483
AccII CGCG 2 cut(s) 402, 524
AciI CCGC 5 cut(s) 299, 365, 400, 524, 645
AclI AACGTT 1 cut(s) 600
AcoI YGGCCR 1 cut(s) 546
AfaI GTAC 1 cut(s) 17
AfiI CCNNNNNNNGG 5 cut(s) 280, 353, 374, 406, 483
AflIII ACRYGT 1 cut(s) 554
AgsI TTSAA 5 cut(s) 13, 95, 140, 308, 598
AhlI ACTAGT 1 cut(s) 616
AoxI GGCC 3 cut(s) 239, 377, 546
ApeKI GCWGC 2 cut(s) 295, 311
ArsI GACNNNNNNTTYG 2 cut(s) 334, 366
AspLEI GCGC 3 cut(s) 316, 475, 524
AspS9I GGNCC 2 cut(s) 244, 377
AsuC2I CCSGG 1 cut(s) 348
AvaII GGWCC 1 cut(s) 244
BalI TGGCCA 1 cut(s) 548
BanII GRGCYC 1 cut(s) 418
BbsI GAAGAC 2 cut(s) 208, 220
BbvI GCAGC 2 cut(s) 307, 323
BccI CCATC 1 cut(s) 485
BcnI CCSGG 1 cut(s) 348
BcuI ACTAGT 1 cut(s) 616
BfaI CTAG 2 cut(s) 432, 617
BisI GCNGC 4 cut(s) 296, 299, 312, 645
BlsI GCNGC 4 cut(s) 297, 300, 313, 646
BmcAI AGTACT 1 cut(s) 17
Bme1390I CCNGG 1 cut(s) 348
Bme18I GGWCC 1 cut(s) 244
BmgT120I GGNCC 2 cut(s) 244, 377
BmiI GGNNCC 5 cut(s) 107, 115, 172, 378, 387
BmrFI CCNGG 1 cut(s) 348
BmrI ACTGGG 1 cut(s) 421
BmsI GCATC 3 cut(s) 175, 197, 465
BmuI ACTGGG 1 cut(s) 421
BpiI GAAGAC 2 cut(s) 208, 220
BpuMI CCSGG 1 cut(s) 348
BsaJI CCNNGG 4 cut(s) 109, 372, 389, 543
Bsc4I CCNNNNNNNGG 5 cut(s) 280, 353, 374, 406, 483
Bse1I ACTGG 2 cut(s) 416, 451
Bse3DI GCAATG 1 cut(s) 475
BseDI CCNNGG 4 cut(s) 109, 372, 389, 543
BseGI GGATG 1 cut(s) 188
BseLI CCNNNNNNNGG 5 cut(s) 280, 353, 374, 406, 483
BseMI GCAATG 1 cut(s) 475
BseNI ACTGG 2 cut(s) 416, 451
BseXI GCAGC 2 cut(s) 307, 323
Bsh1236I CGCG 2 cut(s) 402, 524
BshFI GGCC 3 cut(s) 241, 379, 548
BsiSI CCGG 2 cut(s) 242, 348
BslFI GGGAC 1 cut(s) 18
BslI CCNNNNNNNGG 5 cut(s) 280, 353, 374, 406, 483
BsmFI GGGAC 1 cut(s) 18
BsnI GGCC 3 cut(s) 241, 379, 548
Bsp1286I GDGCHC 1 cut(s) 418
Bsp143I GATC 3 cut(s) 437, 515, 703
Bsp19I CCATGG 1 cut(s) 543
BspACI CCGC 5 cut(s) 299, 365, 400, 524, 645
BspANI GGCC 3 cut(s) 241, 379, 548
BspFNI CGCG 2 cut(s) 402, 524
BspLI GGNNCC 5 cut(s) 107, 115, 172, 378, 387
BsrDI GCAATG 1 cut(s) 475
BsrI ACTGG 2 cut(s) 416, 451
BssECI CCNNGG 4 cut(s) 109, 372, 389, 543
BssMI GATC 3 cut(s) 437, 515, 703
BssT1I CCWWGG 2 cut(s) 109, 543
Bst4CI ACNGT 2 cut(s) 129, 508
BstDEI CTNAG 2 cut(s) 45, 269
BstDSI CCRYGG 2 cut(s) 372, 543
BstF5I GGATG 1 cut(s) 188
BstFNI CGCG 2 cut(s) 402, 524
BstHHI GCGC 3 cut(s) 316, 475, 524
BstKTI GATC 3 cut(s) 440, 518, 706
BstMBI GATC 3 cut(s) 437, 515, 703
BstNSI RCATGY 1 cut(s) 558
BstSCI CCNGG 1 cut(s) 346
BstUI CGCG 2 cut(s) 402, 524
BstV1I GCAGC 2 cut(s) 307, 323
BstV2I GAAGAC 2 cut(s) 208, 220
BsuRI GGCC 3 cut(s) 241, 379, 548
BtgI CCRYGG 2 cut(s) 372, 543
BtgZI GCGATG 1 cut(s) 417
BtsCI GGATG 1 cut(s) 188
CfoI GCGC 3 cut(s) 316, 475, 524
Cfr13I GGNCC 2 cut(s) 244, 377
Csp6I GTAC 1 cut(s) 16
CviAII CATG 7 cut(s) 280, 483, 544, 555, 570, 677, 710
CviQI GTAC 1 cut(s) 16
DdeI CTNAG 2 cut(s) 45, 269
DpnI GATC 3 cut(s) 439, 517, 705
DpnII GATC 3 cut(s) 437, 515, 703
EaeI YGGCCR 1 cut(s) 546
Eco130I CCWWGG 2 cut(s) 109, 543
Eco24I GRGCYC 1 cut(s) 418
Eco47I GGWCC 1 cut(s) 244
EcoT14I CCWWGG 2 cut(s) 109, 543
EcoT22I ATGCAT 2 cut(s) 82, 190
EcoT38I GRGCYC 1 cut(s) 418
ErhI CCWWGG 2 cut(s) 109, 543
FaeI CATG 7 cut(s) 283, 486, 547, 558, 573, 680, 713
FaqI GGGAC 1 cut(s) 18
FatI CATG 7 cut(s) 279, 482, 543, 554, 569, 676, 709
FauI CCCGC 1 cut(s) 372
Fnu4HI GCNGC 4 cut(s) 296, 299, 312, 645
FokI GGATG 1 cut(s) 175
FriOI GRGCYC 1 cut(s) 418
Fsp4HI GCNGC 4 cut(s) 296, 299, 312, 645
FspBI CTAG 2 cut(s) 432, 617
GlaI GCGC 3 cut(s) 315, 474, 523
GluI GCNGC 4 cut(s) 296, 299, 312, 645
HaeIII GGCC 3 cut(s) 241, 379, 548
HapII CCGG 2 cut(s) 242, 348
HhaI GCGC 3 cut(s) 316, 475, 524
Hin1II CATG 7 cut(s) 283, 486, 547, 558, 573, 680, 713
Hin6I GCGC 3 cut(s) 314, 473, 522
HinP1I GCGC 3 cut(s) 314, 473, 522
HpaII CCGG 2 cut(s) 242, 348
Hpy166II GTNNAC 1 cut(s) 262
Hpy188III TCNNGA 1 cut(s) 92
Hpy8I GTNNAC 1 cut(s) 262
HpyAV CCTTC 1 cut(s) 378
HpyCH4III ACNGT 2 cut(s) 129, 508
HpyCH4IV ACGT 1 cut(s) 600
HpyCH4V TGCA 3 cut(s) 80, 188, 456
HpyF3I CTNAG 2 cut(s) 45, 269
HpySE526I ACGT 1 cut(s) 600
Hsp92II CATG 7 cut(s) 283, 486, 547, 558, 573, 680, 713
HspAI GCGC 3 cut(s) 314, 473, 522
Kzo9I GATC 3 cut(s) 437, 515, 703
LmnI GCTCC 1 cut(s) 113
LpnPI CCDG 5 cut(s) 255, 361, 397, 432, 681
Lsp1109I GCAGC 2 cut(s) 307, 323
LweI GCATC 3 cut(s) 175, 197, 465
MaeI CTAG 2 cut(s) 432, 617
MaeII ACGT 1 cut(s) 600
MaeIII GTNAC 1 cut(s) 632
MalI GATC 3 cut(s) 439, 517, 705
MboI GATC 3 cut(s) 437, 515, 703
MboII GAAGA 4 cut(s) 213, 225, 447, 499
MfeI CAATTG 1 cut(s) 8
MhlI GDGCHC 1 cut(s) 418
MlsI TGGCCA 1 cut(s) 548
MluCI AATT 3 cut(s) 8, 54, 275
MluNI TGGCCA 1 cut(s) 548
MmeI TCCRAC 1 cut(s) 583
MnlI CCTC 9 cut(s) 33, 133, 158, 236, 321, 384, 400, 582, 727
Mox20I TGGCCA 1 cut(s) 548
Mph1103I ATGCAT 2 cut(s) 82, 190
MscI TGGCCA 1 cut(s) 548
MseI TTAA 1 cut(s) 336
Msp20I TGGCCA 1 cut(s) 548
MspI CCGG 2 cut(s) 242, 348
MspR9I CCNGG 1 cut(s) 348
MunI CAATTG 1 cut(s) 8
MvnI CGCG 2 cut(s) 402, 524
NciI CCSGG 1 cut(s) 348
NcoI CCATGG 1 cut(s) 543
NdeII GATC 3 cut(s) 437, 515, 703
NlaIII CATG 7 cut(s) 283, 486, 547, 558, 573, 680, 713
NlaIV GGNNCC 5 cut(s) 107, 115, 172, 378, 387
NmeAIII GCCGAG 2 cut(s) 204, 556
NmuCI GTSAC 1 cut(s) 632
NsiI ATGCAT 2 cut(s) 82, 190
NspI RCATGY 1 cut(s) 558
PciI ACATGT 1 cut(s) 554
PflMI CCANNNNNTGG 2 cut(s) 280, 483
PkrI GCNGC 4 cut(s) 297, 300, 313, 646
PscI ACATGT 1 cut(s) 554
Psp1406I AACGTT 1 cut(s) 600
PspN4I GGNNCC 5 cut(s) 107, 115, 172, 378, 387
PspPI GGNCC 2 cut(s) 244, 377
RsaI GTAC 1 cut(s) 17
RsaNI GTAC 1 cut(s) 16
SaqAI TTAA 1 cut(s) 336
SatI GCNGC 4 cut(s) 296, 299, 312, 645
Sau3AI GATC 3 cut(s) 437, 515, 703
Sau96I GGNCC 2 cut(s) 244, 377
ScaI AGTACT 1 cut(s) 17
ScrFI CCNGG 1 cut(s) 348
SduI GDGCHC 1 cut(s) 418
SetI ASST 9 cut(s) 44, 169, 176, 228, 249, 306, 332, 603, 729
SfaNI GCATC 3 cut(s) 175, 197, 465
SinI GGWCC 1 cut(s) 244
SpeI ACTAGT 1 cut(s) 616
Sse9I AATT 3 cut(s) 8, 54, 275
SsiI CCGC 5 cut(s) 299, 365, 400, 524, 645
SspI AATATT 1 cut(s) 360
SspMI CTAG 2 cut(s) 432, 617
StyD4I CCNGG 1 cut(s) 346
StyI CCWWGG 2 cut(s) 109, 543
TaaI ACNGT 2 cut(s) 129, 508
TaiI ACGT 1 cut(s) 603
TaqI TCGA 1 cut(s) 199
TasI AATT 3 cut(s) 8, 54, 275
TatI WGTACW 1 cut(s) 15
TauI GCSGC 2 cut(s) 301, 647
Tru1I TTAA 1 cut(s) 336
Tru9I TTAA 1 cut(s) 336
TseFI GTSAC 1 cut(s) 632
TseI GCWGC 2 cut(s) 295, 311
Tsp45I GTSAC 1 cut(s) 632
TspDTI ATGAA 3 cut(s) 268, 509, 693
Van91I CCANNNNNTGG 2 cut(s) 280, 483
VpaK11BI GGWCC 1 cut(s) 244
XceI RCATGY 1 cut(s) 558
XcmI CCANNNNNNNNNTGG 1 cut(s) 379
XspI CTAG 2 cut(s) 432, 617
ZrmI AGTACT 1 cut(s) 17
Zsp2I ATGCAT 2 cut(s) 82, 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.