FvH4_3g19021

Protein strawberry notch

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
12263353 .. 12265799
2447 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g19021.t1

Sequence Viewer

Length: 2382 bp
ATGCATGGAATTCTACATCAGACTAGTTGTGTTGGTACTCCTCAGCAAAATGGAATTGCTGAAAGGAAGAATCGAGATCTGCTTGAGAAAACAAGAGCTCTCATATTCCAAATGAATGTACCTAAGAGTTTCTGGTCTCAAAGTGTGCTCACTGCTACTTATCTCATCAATCGTCTGCCTAGTAGAGTACTTGGTGGTAAGTCCCCTCTTGAAGTGTTGAAAGGAAGGAAGATTGATATCTCTCACCTGAGAGTATTTGGTTGTGTTTGTTTTGTTCACATACAAGCTAAACAAAGAGGGAAACTTGATCCTCGGGCTGAAAAGTGTGTGTTTTTAGGATATTCATCCACTCAAAAGGGTTACAAATGCTACAGCCCCTCTTCTAAAAAGATCATTGTCTCTAGGAATGTTAGATTCGATGAGAATACTTCTTTCTTTGCTGGGAAATCAGATGGTTTCAGTCAGGGGGAGTCTTTATTTGATCTGTTTCTAACTCCCAATCTTCCTGTCAATGAGGATAGTAGACAGTCTTTCCATCATACTGCTTCAGTTCCAGCTTCGAGTTTCAGTCATCCTGTTGTTGGGGATTCCAGTCAGCATTCCTATCCTACTGCTTCGGTTTCAGAAGTTCTAGCAGTGCCTCCAAATCCAGATGTTGACCAATCTGAATTACCTGTGCAACCTGTTGTTGAGCCTCTTTCTCCACCTCCAACTGTACCTCGTAGAAATCCTACGCGAGTACGAGGTCCTCCATCAAAGCTCCAAGATTACGTGACATATGCTGCGAGCACCCTTGATGCTACTCATGAACCTCAAAGCTTTGATGAAGCAAATCAATATGAAGTGTGGAAACAGGCTATGGCAGATGAAATTCAAGCCCTTAATGAGAATAAAACATGGAGTGTGGTTAAGATTCCTCAAGGGAAGAAAGCAGTAGGCAGTAGATGGGTGTATAAGACCAAGTTTCACTTAGATGGCACTGTAGAAAGACATAAGGCTCGATTGGTAGCTAGGGGTTTCACTCAAACCTATGGAGTTGATTACAAAGAAACCTTTGCTCCTGTTGCAAAAATGAGTATTGTTAGGGTTCTTCTTTCGGTTGCTATGAATCATGGTTGGCCTCTTTTTCAAATGGATGTGAAGAATGCTTTTCTACATGGTGATCTTGAAGAGGAGGTTTATATGAAATTGCCTCCTGGTCACCCTCAATCTTCTAATCCTAATATGGTATGCAAACTTCACAAAGCCATTTACGGCTTGAAACAATCTCCTCGAGCTTGGTATGCCAAGCTTAGTTCTGTGCTTGAAGAAGTTGGTTTTCATAGCAGCAATGCAGATTCCTCATTATTTGTTCGAATTGGTTCAACAAGTAAGCTTGTGGTGCTTATTTATGTTGATGATTTAATTGTGACAGGTGATAATCTAGAAGAGATTAATGTTCTCAAGCACTCTCTTCGTTGCAAGTTTGCTATTAAGGATTTGGGGCGTCTTAAGTACTTCCTTGGTATAGAAATGGCTACTTCTCATAAAGGATTGTTTCTAAATCAAAGGAAGTATGTTCTTGATTTGCTGAAAGAGTCAGAGTTGTGGGACAGCAAGCCTACTAGCACTCCCCTTGACAATAAGTGGGATAGCAAGCCTGCCAGCACTCCTCTGGACAGCAAGCTTCAGTTTGATACTTTAAGTCCTTTTCTCTCTGATGTGACCTCTTATCAAAGGCTGGTTGGTAAGTTAATTTACCTTACAATCACTCGGCCAGACATTACTTTTGCTGTGAGTATTATTAGTCAATTTATGCAAGCTCCTACTCAAGCTCATCTTCGCATTGTTAAGAGAATTCTTCGTTATCTTAAAGGTTCTGCTGGTAGAGGTATTTTGTTGAAAAACAATGGTCATACTGATATCTTAGGCTACACAGATGCTGATTGGGCAGGAAATTCTCTTGATCGTAAGTCCACTACAGGTTTTTGTACCTTTGTAGGTGGTAACTTGGTCAGTTGGAGAAGCAAGAAACAAACTGTTGTTGCCCGTTCTAGTGCCGAAGCTAAATATCGAGCTATGGCTTCCACTGCTTGTGAGCTTATTTGGCTGAAGGGATTGCTGTCTGACTTGGGATCCCCTAGCAGTCAACCAATGTCCCTTTATTATGATAATCAAGCTGCAATGCACATTGCCTCTAATCCTGTCTTTCATGAGAGAACTAAGCATATAGAGGTCGATTGTCATTATATACGAGCTCAAGTTCAGTCCAAGGTTATTGATACACATTACACTCACAGTCAAGATCAATTGGCTGACATCTTTACCAAATCTATTTCCGCTGCTCAATTTCATCGACTCTTGGGCAAGCTTGGCTCAATTAATCCTCTTGATCCAGCTTGA

Protein Analysis

794

Amino Acids

88.63

Weight (kDa)

9.32

Isoelectric Point (pI)

45.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SH3_retrovirus PF25597 88 - 147 6.8e-29 Retroviral polymerase SH3-like domain
RVT_2 PF07727 297 - 539 1.9e-78 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000071)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G23160 AT4G23160
fragaria_vesca FvH4_2g08111 FvH4_2g17332 FvH4_2g18071 FvH4_2g20531 FvH4_2g20842 FvH4_2g20842 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g24231 FvH4_2g24232 FvH4_3g00831 FvH4_3g00831 FvH4_3g03561 FvH4_3g03561 FvH4_3g10282 FvH4_3g18165 FvH4_3g19021 FvH4_3g24071 FvH4_3g33123 FvH4_3g33970 FvH4_3g38851 FvH4_3g39133 FvH4_3g39271 FvH4_4g00981 FvH4_4g08191 FvH4_4g08311 FvH4_4g08311 FvH4_4g08311 FvH4_4g09341 FvH4_4g12550 FvH4_4g12550 FvH4_4g12550 FvH4_4g13391 FvH4_4g14842 FvH4_4g27901 FvH4_5g11561 FvH4_5g15611 FvH4_5g17991 FvH4_5g27871 FvH4_5g29995 FvH4_5g39662 FvH4_6g02392 FvH4_6g12781 FvH4_6g20106 FvH4_6g20106 FvH4_6g20106 FvH4_6g30872 FvH4_6g34901 FvH4_6g35632 FvH4_6g36661 FvH4_6g43795 FvH4_6g44611 FvH4_7g01791 FvH4_7g04041 FvH4_7g12551 FvH4_7g23351
malus_domestica MD00G1134200.v1.1 MD01G1096500.v1.1 MD01G1128200.v1.1 MD02G1250500.v1.1 MD02G1294900.v1.1 MD03G1121800.v1.1 MD04G1021400.v1.1 MD04G1051100.v1.1 MD04G1051300.v1.1 MD04G1099000.v1.1 MD05G1047900.v1.1 MD05G1298000.v1.1 MD06G1064200.v1.1 MD06G1120600.v1.1 MD07G1013900.v1.1 MD09G1226900.v1.1 MD10G1196700.v1.1 MD10G1307000.v1.1 MD10G1338900.v1.1 MD11G1107300.v1.1 MD11G1138300.v1.1 MD11G1236700.v1.1 MD12G1032500.v1.1 MD12G1150100.v1.1 MD12G1247800.v1.1 MD17G1267900.v1.1
pyrus_communis pycom02g03660 pycom02g13370 pycom02g14840 pycom02g18400 pycom02g18880 pycom02g22740 pycom04g08800 pycom04g15770 pycom05g07980 pycom05g19640 pycom06g09360 pycom07g13160 pycom08g11820 pycom08g21740 pycom09g19980 pycom10g04810 pycom10g05420 pycom10g14650 pycom11g03140 pycom11g21550 pycom12g14740 pycom13g01600 pycom13g29510 pycom14g07060 pycom15g01990 pycom15g19850 pycom15g30860 pycom16g15290 pycom16g16250 pycom16g25390 pycom17g17270 pycom520g00070
rosa_chinensis RchiOBHm_Chr1g0316691 RchiOBHm_Chr1g0320751 RchiOBHm_Chr1g0320771 RchiOBHm_Chr1g0322231 RchiOBHm_Chr1g0322861 RchiOBHm_Chr1g0328471 RchiOBHm_Chr1g0333321 RchiOBHm_Chr1g0337871 RchiOBHm_Chr1g0339051 RchiOBHm_Chr1g0349861 RchiOBHm_Chr1g0361951 RchiOBHm_Chr1g0365931 RchiOBHm_Chr1g0365981 RchiOBHm_Chr1g0377711 RchiOBHm_Chr1g0381581 RchiOBHm_Chr1g0382741 RchiOBHm_Chr1g0383501 RchiOBHm_Chr2g0101201 RchiOBHm_Chr2g0113601 RchiOBHm_Chr2g0124031 RchiOBHm_Chr2g0135481 RchiOBHm_Chr2g0148361 RchiOBHm_Chr2g0150101 RchiOBHm_Chr2g0154181 RchiOBHm_Chr2g0156071 RchiOBHm_Chr2g0166521 RchiOBHm_Chr2g0166821 RchiOBHm_Chr3g0448011 RchiOBHm_Chr3g0450941 RchiOBHm_Chr3g0450961 RchiOBHm_Chr3g0451051 RchiOBHm_Chr3g0451721 RchiOBHm_Chr3g0453371 RchiOBHm_Chr3g0454881 RchiOBHm_Chr3g0457421 RchiOBHm_Chr3g0457661 RchiOBHm_Chr3g0460011 RchiOBHm_Chr3g0461531 RchiOBHm_Chr3g0461981 RchiOBHm_Chr3g0463471 RchiOBHm_Chr3g0466641 RchiOBHm_Chr3g0468181 RchiOBHm_Chr3g0483351 RchiOBHm_Chr4g0394001 RchiOBHm_Chr4g0397261 RchiOBHm_Chr4g0404531 RchiOBHm_Chr4g0410841 RchiOBHm_Chr4g0415501 RchiOBHm_Chr4g0425221 RchiOBHm_Chr4g0430811 RchiOBHm_Chr5g0010831 RchiOBHm_Chr5g0016831 RchiOBHm_Chr5g0016851 RchiOBHm_Chr5g0031351 RchiOBHm_Chr5g0032151 RchiOBHm_Chr5g0041201 RchiOBHm_Chr5g0042191 RchiOBHm_Chr5g0064121 RchiOBHm_Chr5g0066601 RchiOBHm_Chr5g0078371 RchiOBHm_Chr5g0079271 RchiOBHm_Chr6g0263751 RchiOBHm_Chr6g0285111 RchiOBHm_Chr6g0298961 RchiOBHm_Chr6g0300481 RchiOBHm_Chr6g0303211 RchiOBHm_Chr7g0192341 RchiOBHm_Chr7g0196171 RchiOBHm_Chr7g0200281 RchiOBHm_Chr7g0200551 RchiOBHm_Chr7g0207611 RchiOBHm_Chr7g0212421 RchiOBHm_Chr7g0214991 RchiOBHm_Chr7g0219211 RchiOBHm_Chr7g0242371
rosa_laevigata RLG00000002389 RLG00000007980
rosa_roxburghii Rroxscaffold_1G00053480 Rroxscaffold_2G00090890 Rroxscaffold_2G00099660 Rroxscaffold_2G00134510 Rroxscaffold_3G00221450 Rroxscaffold_3G00240550 Rroxscaffold_4G00305710 Rroxscaffold_4G00306360 Rroxscaffold_4G00306800 Rroxscaffold_4G00329090 Rroxscaffold_5G00382750 Rroxscaffold_5G00385900 Rroxscaffold_6G00403080 Rroxscaffold_7G00172890 Rroxscaffold_7G00186690
rosa_samantha Rh1DG425600
rosa_wichuraiana Rw0G001640 Rw0G009160 Rw0G010480 Rw0G010520 Rw0G013850 Rw0G017170 Rw0G018520 Rw0G019280 Rw0G022780 Rw1G000360 Rw1G001410 Rw1G001630 Rw1G002100 Rw1G006810 Rw1G010680 Rw1G012700 Rw1G016160 Rw1G022180 Rw1G023580 Rw1G025640 Rw1G026310 Rw1G027230 Rw1G028110 Rw1G034180 Rw2G004990 Rw2G005840 Rw2G007350 Rw2G024730 Rw2G025580 Rw2G026670 Rw2G027210 Rw2G029060 Rw2G031560 Rw2G042190 Rw2G043850 Rw2G045990 Rw2G046130 Rw2G049290 Rw2G049310 Rw2G049790 Rw2G052250 Rw3G004350 Rw3G013100 Rw3G015280 Rw3G015720 Rw3G024630 Rw3G026470 Rw3G027840 Rw3G028960 Rw3G029130 Rw3G029160 Rw4G000280 Rw4G006650 Rw4G008970 Rw4G009310 Rw4G011730 Rw4G012000 Rw4G012610 Rw4G014300 Rw4G014690 Rw4G015190 Rw4G016470 Rw4G020750 Rw4G025060 Rw4G025080 Rw5G005610 Rw5G010380 Rw5G013970 Rw5G015130 Rw5G015250 Rw5G017640 Rw5G019910 Rw5G022410 Rw5G023550 Rw5G029710 Rw5G037650 Rw5G038280 Rw5G038570 Rw5G041550 Rw5G042600 Rw5G043910 Rw5G047850 Rw5G048200 Rw5G049920 Rw6G000260 Rw6G000530 Rw6G001710 Rw6G005090 Rw6G006730 Rw6G009310 Rw6G010950 Rw6G011630 Rw6G012080 Rw6G012750 Rw6G015970 Rw6G020700 Rw6G024350 Rw7G008540 Rw7G016620 Rw7G019400 Rw7G020010 Rw7G024240 Rw7G025630 Rw7G027550 Rw7G027770 Rw7G027960 Rw7G028450 Rw7G031280 Rw7G031970 Rw7G032180 Rw7G033590 Rw7G033720 Rw7G033890 Rw7G041800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 523
AccII CGCG 1 cut(s) 736
AciI CCGC 1 cut(s) 2319
AclWI GGATC 4 cut(s) 302, 2109, 2122, 2366
AcoI YGGCCR 1 cut(s) 1754
AcsI RAATTY 4 cut(s) 9, 870, 1836, 1936
AcuI CTGAAG 3 cut(s) 531, 1652, 2111
AcyI GRCGYC 1 cut(s) 1486
AfaI GTAC 7 cut(s) 37, 120, 189, 717, 741, 1496, 1972
AfiI CCNNNNNNNGG 1 cut(s) 581
AflII CTTAAG 1 cut(s) 1490
AgsI TTSAA 9 cut(s) 212, 220, 875, 1130, 1169, 1261, 1307, 1365, 1882
AhlI ACTAGT 1 cut(s) 23
AjnI CCWGG 1 cut(s) 1195
Alw21I GWGCWC 4 cut(s) 100, 150, 791, 2239
Alw26I GTCTC 2 cut(s) 141, 403
AlwI GGATC 4 cut(s) 302, 2109, 2122, 2366
AlwNI CAGNNNCTG 1 cut(s) 1922
Ama87I CYCGRG 2 cut(s) 312, 1272
AoxI GGCC 2 cut(s) 1118, 1754
ApeKI GCWGC 4 cut(s) 782, 1326, 2159, 2321
ApoI RAATTY 4 cut(s) 9, 870, 1836, 1936
ArsI GACNNNNNNTTYG 2 cut(s) 1751, 1783
AseI ATTAAT 2 cut(s) 1434, 2361
Asp700I GAANNNNTTC 1 cut(s) 1360
AspS9I GGNCC 1 cut(s) 746
AsuHPI GGTGA 4 cut(s) 236, 1172, 1193, 1427
AsuII TTCGAA 1 cut(s) 1354
AvaI CYCGRG 2 cut(s) 312, 1272
AvaII GGWCC 1 cut(s) 746
BamHI GGATCC 1 cut(s) 2114
BanII GRGCYC 2 cut(s) 100, 2239
BarI GAAGNNNNNNTAC 2 cut(s) 1221, 1253
Bbv12I GWGCWC 4 cut(s) 100, 150, 791, 2239
BbvCI CCTCAGC 1 cut(s) 42
BbvI GCAGC 4 cut(s) 769, 1338, 2146, 2308
BccI CCATC 5 cut(s) 446, 543, 760, 939, 968
BceAI ACGGC 1 cut(s) 1270
BcgI CGANNNNNNTGC 2 cut(s) 1436, 1470
BciT130I CCWGG 1 cut(s) 1197
BcoDI GTCTC 2 cut(s) 141, 403
BcuI ACTAGT 1 cut(s) 23
BfaI CTAG 9 cut(s) 24, 180, 402, 632, 1011, 1424, 1605, 2034, 2121
BfmI CTRYAG 3 cut(s) 370, 981, 1959
BfrI CTTAAG 1 cut(s) 1490
BglII AGATCT 1 cut(s) 76
BisI GCNGC 4 cut(s) 783, 1327, 2160, 2322
BlsI GCNGC 4 cut(s) 784, 1328, 2161, 2323
BmcAI AGTACT 2 cut(s) 189, 1496
Bme1390I CCNGG 1 cut(s) 1197
Bme18I GGWCC 1 cut(s) 746
BmeT110I CYCGRG 2 cut(s) 312, 1272
BmgT120I GGNCC 1 cut(s) 746
BmiI GGNNCC 1 cut(s) 2116
BmrFI CCNGG 1 cut(s) 1197
BmsI GCATC 2 cut(s) 787, 1909
Bpu10I CCTNAGC 1 cut(s) 42
Bpu14I TTCGAA 1 cut(s) 1354
BpuEI CTTGAG 5 cut(s) 104, 903, 1427, 1794, 2223
BsaAI YACGTR 1 cut(s) 772
BsaBI GATNNNNATC 2 cut(s) 236, 343
BsaHI GRCGYC 1 cut(s) 1486
BsaI GGTCTC 1 cut(s) 141
BsaJI CCNNGG 3 cut(s) 311, 1501, 2250
BsaXI ACNNNNNCTCC 4 cut(s) 1042, 1072, 1594, 1624
Bsc4I CCNNNNNNNGG 1 cut(s) 581
Bse1I ACTGG 1 cut(s) 591
Bse3DI GCAATG 3 cut(s) 1336, 2169, 2169
Bse8I GATNNNNATC 2 cut(s) 236, 343
BseBI CCWGG 1 cut(s) 1197
BseDI CCNNGG 3 cut(s) 311, 1501, 2250
BseGI GGATG 3 cut(s) 344, 571, 1141
BseJI GATNNNNATC 2 cut(s) 236, 343
BseLI CCNNNNNNNGG 1 cut(s) 581
BseMI GCAATG 3 cut(s) 1336, 2169, 2169
BseMII CTCAG 2 cut(s) 56, 239
BseNI ACTGG 1 cut(s) 591
BseRI GAGGAG 4 cut(s) 30, 1187, 1260, 1641
BseXI GCAGC 4 cut(s) 769, 1338, 2146, 2308
BseYI CCCAGC 1 cut(s) 440
Bsh1236I CGCG 1 cut(s) 736
BshFI GGCC 2 cut(s) 1120, 1756
BsiHKAI GWGCWC 4 cut(s) 100, 150, 791, 2239
BsiHKCI CYCGRG 2 cut(s) 312, 1272
BslFI GGGAC 3 cut(s) 187, 1604, 2122
BslI CCNNNNNNNGG 1 cut(s) 581
BsmAI GTCTC 2 cut(s) 141, 403
BsmFI GGGAC 3 cut(s) 187, 1604, 2122
BsmI GAATGC 2 cut(s) 598, 1150
BsnI GGCC 2 cut(s) 1120, 1756
Bso31I GGTCTC 1 cut(s) 141
BsoBI CYCGRG 2 cut(s) 312, 1272
Bsp119I TTCGAA 1 cut(s) 1354
Bsp1286I GDGCHC 4 cut(s) 100, 150, 791, 2239
Bsp143I GATC 9 cut(s) 76, 307, 390, 481, 1162, 1945, 2114, 2284, 2371
BspACI CCGC 1 cut(s) 2319
BspANI GGCC 2 cut(s) 1120, 1756
BspCNI CTCAG 2 cut(s) 55, 240
BspFNI CGCG 1 cut(s) 736
BspHI TCATGA 2 cut(s) 805, 2191
BspLI GGNNCC 1 cut(s) 2116
BspPI GGATC 4 cut(s) 302, 2109, 2122, 2366
BspT104I TTCGAA 1 cut(s) 1354
BspTI CTTAAG 1 cut(s) 1490
BspTNI GGTCTC 1 cut(s) 141
BsrDI GCAATG 3 cut(s) 1336, 2169, 2169
BsrI ACTGG 1 cut(s) 591
BssECI CCNNGG 3 cut(s) 311, 1501, 2250
BssMI GATC 9 cut(s) 76, 307, 390, 481, 1162, 1945, 2114, 2284, 2371
BssNI GRCGYC 1 cut(s) 1486
BssT1I CCWWGG 2 cut(s) 1501, 2250
Bst2UI CCWGG 1 cut(s) 1197
Bst4CI ACNGT 5 cut(s) 528, 715, 982, 2020, 2279
Bst6I CTCTTC 4 cut(s) 385, 1164, 1422, 1458
BstACI GRCGYC 1 cut(s) 1486
BstAFI CTTAAG 1 cut(s) 1490
BstBAI YACGTR 1 cut(s) 772
BstBI TTCGAA 1 cut(s) 1354
BstC8I GCNNGC 8 cut(s) 787, 1598, 1637, 1641, 1645, 1664, 1800, 2348
BstDEI CTNAG 7 cut(s) 42, 123, 248, 970, 1292, 1906, 2202
BstEII GGTNACC 1 cut(s) 1199
BstF5I GGATG 3 cut(s) 344, 571, 1141
BstFNI CGCG 1 cut(s) 736
BstKTI GATC 9 cut(s) 79, 310, 393, 484, 1165, 1948, 2117, 2287, 2374
BstMAI GTCTC 2 cut(s) 141, 403
BstMBI GATC 9 cut(s) 76, 307, 390, 481, 1162, 1945, 2114, 2284, 2371
BstMWI GCNNNNNNNGC 7 cut(s) 1064, 1283, 1381, 1928, 2069, 2086, 2352
BstNI CCWGG 1 cut(s) 1197
BstPI GGTNACC 1 cut(s) 1199
BstSCI CCNGG 1 cut(s) 1195
BstSFI CTRYAG 3 cut(s) 370, 981, 1959
BstUI CGCG 1 cut(s) 736
BstV1I GCAGC 4 cut(s) 769, 1338, 2146, 2308
BstX2I RGATCY 2 cut(s) 76, 2114
BstYI RGATCY 2 cut(s) 76, 2114
BsuRI GGCC 2 cut(s) 1120, 1756
BtsCI GGATG 3 cut(s) 344, 571, 1141
BtsI GCAGTG 3 cut(s) 150, 642, 2067
BtsIMutI CAGTG 4 cut(s) 150, 642, 978, 2067
Cac8I GCNNGC 8 cut(s) 787, 1598, 1637, 1641, 1645, 1664, 1800, 2348
CaiI CAGNNNCTG 1 cut(s) 1922
CciI TCATGA 2 cut(s) 805, 2191
Cfr13I GGNCC 1 cut(s) 746
CseI GACGC 1 cut(s) 1475
Csp6I GTAC 7 cut(s) 36, 119, 188, 716, 740, 1495, 1971
CviAII CATG 6 cut(s) 5, 806, 897, 1112, 1157, 2192
CviQI GTAC 7 cut(s) 36, 119, 188, 716, 740, 1495, 1971
DdeI CTNAG 7 cut(s) 42, 123, 248, 970, 1292, 1906, 2202
DpnI GATC 9 cut(s) 78, 309, 392, 483, 1164, 1947, 2116, 2286, 2373
DpnII GATC 9 cut(s) 76, 307, 390, 481, 1162, 1945, 2114, 2284, 2371
EaeI YGGCCR 1 cut(s) 1754
Eam1104I CTCTTC 4 cut(s) 385, 1164, 1422, 1458
EarI CTCTTC 4 cut(s) 385, 1164, 1422, 1458
Ecl136II GAGCTC 2 cut(s) 98, 2237
Eco130I CCWWGG 2 cut(s) 1501, 2250
Eco24I GRGCYC 2 cut(s) 100, 2239
Eco31I GGTCTC 1 cut(s) 141
Eco32I GATATC 2 cut(s) 238, 1903
Eco47I GGWCC 1 cut(s) 746
Eco53kI GAGCTC 2 cut(s) 98, 2237
Eco57I CTGAAG 3 cut(s) 531, 1652, 2111
Eco88I CYCGRG 2 cut(s) 312, 1272
Eco91I GGTNACC 1 cut(s) 1199
EcoICRI GAGCTC 2 cut(s) 98, 2237
EcoO109I RGGNCCY 1 cut(s) 746
EcoO65I GGTNACC 1 cut(s) 1199
EcoRI GAATTC 2 cut(s) 9, 1836
EcoRII CCWGG 1 cut(s) 1195
EcoRV GATATC 2 cut(s) 238, 1903
EcoT14I CCWWGG 2 cut(s) 1501, 2250
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 2 cut(s) 100, 2239
ErhI CCWWGG 2 cut(s) 1501, 2250
FaeI CATG 6 cut(s) 8, 809, 900, 1115, 1160, 2195
FalI AAGNNNNNCTT 4 cut(s) 953, 985, 1803, 1835
FaqI GGGAC 3 cut(s) 187, 1604, 2122
FatI CATG 6 cut(s) 4, 805, 896, 1111, 1156, 2191
FauNDI CATATG 1 cut(s) 778
FblI GTMKAC 1 cut(s) 523
Fnu4HI GCNGC 4 cut(s) 783, 1327, 2160, 2322
FokI GGATG 3 cut(s) 331, 558, 1148
FriOI GRGCYC 2 cut(s) 100, 2239
Fsp4HI GCNGC 4 cut(s) 783, 1327, 2160, 2322
FspBI CTAG 9 cut(s) 24, 180, 402, 632, 1011, 1424, 1605, 2034, 2121
GluI GCNGC 4 cut(s) 783, 1327, 2160, 2322
GsaI CCCAGC 1 cut(s) 444
HaeIII GGCC 2 cut(s) 1120, 1756
HgaI GACGC 1 cut(s) 1475
Hin1I GRCGYC 1 cut(s) 1486
Hin1II CATG 6 cut(s) 8, 809, 900, 1115, 1160, 2195
HincII GTYRAC 2 cut(s) 658, 2129
HindII GTYRAC 2 cut(s) 658, 2129
HindIII AAGCTT 5 cut(s) 817, 1289, 1373, 1664, 2348
HinfI GANTC 9 cut(s) 70, 414, 470, 587, 913, 1108, 1337, 1577, 2337
HphI GGTGA 4 cut(s) 236, 1172, 1193, 1427
Hpy166II GTNNAC 5 cut(s) 277, 524, 658, 1956, 2129
Hpy188I TCNGA 7 cut(s) 21, 451, 625, 667, 1582, 1699, 2107
Hpy8I GTNNAC 5 cut(s) 277, 524, 658, 1956, 2129
HpyAV CCTTC 2 cut(s) 219, 2086
HpyCH4III ACNGT 5 cut(s) 528, 715, 982, 2020, 2279
HpyCH4IV ACGT 1 cut(s) 771
HpyCH4V TGCA 9 cut(s) 4, 679, 1067, 1233, 1334, 1461, 1798, 2162, 2167
HpyF10VI GCNNNNNNNGC 7 cut(s) 1064, 1283, 1381, 1928, 2069, 2086, 2352
HpyF3I CTNAG 7 cut(s) 42, 123, 248, 970, 1292, 1906, 2202
HpySE526I ACGT 1 cut(s) 771
Hsp92I GRCGYC 1 cut(s) 1486
Hsp92II CATG 6 cut(s) 8, 809, 900, 1115, 1160, 2195
Kzo9I GATC 9 cut(s) 76, 307, 390, 481, 1162, 1945, 2114, 2284, 2371
LmnI GCTCC 3 cut(s) 765, 1063, 1807
Lsp1109I GCAGC 4 cut(s) 769, 1338, 2146, 2308
LweI GCATC 2 cut(s) 787, 1909
MaeI CTAG 9 cut(s) 24, 180, 402, 632, 1011, 1424, 1605, 2034, 2121
MaeII ACGT 1 cut(s) 771
MaeIII GTNAC 6 cut(s) 359, 772, 1199, 1408, 1702, 1985
MalI GATC 9 cut(s) 78, 309, 392, 483, 1164, 1947, 2116, 2286, 2373
MboI GATC 9 cut(s) 76, 307, 390, 481, 1162, 1945, 2114, 2284, 2371
MfeI CAATTG 1 cut(s) 2288
MflI RGATCY 2 cut(s) 76, 2114
MhlI GDGCHC 4 cut(s) 100, 150, 791, 2239
MlyI GAGTC 3 cut(s) 479, 1586, 2331
MmeI TCCRAC 2 cut(s) 734, 1979
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 1360
MslI CAYNNNNRTG 1 cut(s) 972
MspA1I CMGCKG 1 cut(s) 2321
MspCI CTTAAG 1 cut(s) 1490
MspR9I CCNGG 1 cut(s) 1197
MunI CAATTG 1 cut(s) 2288
Mva1269I GAATGC 2 cut(s) 598, 1150
MvaI CCWGG 1 cut(s) 1197
MvnI CGCG 1 cut(s) 736
MwoI GCNNNNNNNGC 7 cut(s) 1064, 1283, 1381, 1928, 2069, 2086, 2352
NdeI CATATG 1 cut(s) 778
NdeII GATC 9 cut(s) 76, 307, 390, 481, 1162, 1945, 2114, 2284, 2371
NlaIII CATG 6 cut(s) 8, 809, 900, 1115, 1160, 2195
NlaIV GGNNCC 1 cut(s) 2116
NmeAIII GCCGAG 1 cut(s) 1732
NmuCI GTSAC 4 cut(s) 772, 1199, 1408, 1702
NsiI ATGCAT 1 cut(s) 6
NspV TTCGAA 1 cut(s) 1354
PaeR7I CTCGAG 1 cut(s) 1272
PagI TCATGA 2 cut(s) 805, 2191
PctI GAATGC 2 cut(s) 598, 1150
PdmI GAANNNNTTC 1 cut(s) 1360
PfeI GAWTC 6 cut(s) 70, 414, 587, 913, 1108, 1337
PkrI GCNGC 4 cut(s) 784, 1328, 2161, 2323
PleI GAGTC 3 cut(s) 478, 1585, 2331
PpsI GAGTC 3 cut(s) 478, 1585, 2331
Ppu21I YACGTR 1 cut(s) 772
PpuMI RGGWCCY 1 cut(s) 746
PshBI ATTAAT 2 cut(s) 1434, 2361
Psp124BI GAGCTC 2 cut(s) 100, 2239
Psp5II RGGWCCY 1 cut(s) 746
Psp6I CCWGG 1 cut(s) 1195
PspEI GGTNACC 1 cut(s) 1199
PspFI CCCAGC 1 cut(s) 440
PspGI CCWGG 1 cut(s) 1195
PspN4I GGNNCC 1 cut(s) 2116
PspPI GGNCC 1 cut(s) 746
PspPPI RGGWCCY 1 cut(s) 746
PspXI VCTCGAGB 1 cut(s) 1272
PstNI CAGNNNCTG 1 cut(s) 1922
PsuI RGATCY 2 cut(s) 76, 2114
RsaI GTAC 7 cut(s) 37, 120, 189, 717, 741, 1496, 1972
RsaNI GTAC 7 cut(s) 36, 119, 188, 716, 740, 1495, 1971
RseI CAYNNNNRTG 1 cut(s) 972
SacI GAGCTC 2 cut(s) 100, 2239
SatI GCNGC 4 cut(s) 783, 1327, 2160, 2322
Sau3AI GATC 9 cut(s) 76, 307, 390, 481, 1162, 1945, 2114, 2284, 2371
Sau96I GGNCC 1 cut(s) 746
ScaI AGTACT 2 cut(s) 189, 1496
SchI GAGTC 3 cut(s) 479, 1586, 2331
ScrFI CCNGG 1 cut(s) 1197
SduI GDGCHC 4 cut(s) 100, 150, 791, 2239
SfaNI GCATC 2 cut(s) 787, 1909
SfcI CTRYAG 3 cut(s) 370, 981, 1959
Sfr274I CTCGAG 1 cut(s) 1272
SfuI TTCGAA 1 cut(s) 1354
SinI GGWCC 1 cut(s) 746
SlaI CTCGAG 1 cut(s) 1272
SmiMI CAYNNNNRTG 1 cut(s) 972
SmlI CTYRAG 7 cut(s) 83, 918, 1272, 1442, 1490, 1809, 2238
SmoI CTYRAG 7 cut(s) 83, 918, 1272, 1442, 1490, 1809, 2238
SpeI ACTAGT 1 cut(s) 23
SsiI CCGC 1 cut(s) 2319
SspMI CTAG 9 cut(s) 24, 180, 402, 632, 1011, 1424, 1605, 2034, 2121
SstI GAGCTC 2 cut(s) 100, 2239
StyD4I CCNGG 1 cut(s) 1195
StyI CCWWGG 2 cut(s) 1501, 2250
TaaI ACNGT 5 cut(s) 528, 715, 982, 2020, 2279
TaiI ACGT 1 cut(s) 774
TaqI TCGA 9 cut(s) 73, 417, 560, 1000, 1273, 1354, 2053, 2217, 2335
TatI WGTACW 2 cut(s) 187, 1494
TfiI GAWTC 6 cut(s) 70, 414, 587, 913, 1108, 1337
TscAI CASTG 4 cut(s) 157, 642, 985, 2074
TseFI GTSAC 4 cut(s) 772, 1199, 1408, 1702
TseI GCWGC 4 cut(s) 782, 1326, 2159, 2321
Tsp45I GTSAC 4 cut(s) 772, 1199, 1408, 1702
TspRI CASTG 4 cut(s) 157, 642, 985, 2074
Vha464I CTTAAG 1 cut(s) 1490
VpaK11BI GGWCC 1 cut(s) 746
VspI ATTAAT 2 cut(s) 1434, 2361
XapI RAATTY 4 cut(s) 9, 870, 1836, 1936
XbaI TCTAGA 1 cut(s) 1423
XcmI CCANNNNNNNNNTGG 1 cut(s) 1651
XhoI CTCGAG 1 cut(s) 1272
XmiI GTMKAC 1 cut(s) 523
XmnI GAANNNNTTC 1 cut(s) 1360
XspI CTAG 9 cut(s) 24, 180, 402, 632, 1011, 1424, 1605, 2034, 2121
ZrmI AGTACT 2 cut(s) 189, 1496
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.