Rw7G033590

NB-ARC domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000071
Physical Location & Seq
Forward (+)
49562333 .. 49565444
3112 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G033590.1

Sequence Viewer

Length: 2061 bp
ATGAAGGGTAAGGCTACTTTGAATAATACATGGATAATTGATACAGGTGCATCTGATCATATGACCAATGACCCTAGTCTTGACATTATGACTCGGCAGATTCTTGGTTATGGTGTTAGAAGGGGAAAATTATACTACCTGGATCTGACAGAGACTGGAGAAAACCAAAAGCATCTTTTGGGGCAAGCTAATCAGATTAATGGGGTAGAGAATGCAAAGGAAGCAAGTGATGTATTTGGAATGTTTATCGAATTTCACAAAATGGTGGCAACTCAGTATCAACAATCCATCCGAGTGTTTCAGTCTGACAATGGTGGAGAGTTTGTGAATGGCCCTATGATTGAGTTTTGCCAGTCACATGGAATTCGTCATCAAACCTCCAATTCTTATACTCCTCAACAGAATGGGTTAGCAGAACGGAAGAACAGGCAGTTGATGGAAGTTGTTCGTGCTTCCTTATTTGGCATGAATGTACCTCGGTCCTATTGGGGAGAAGCAGTAAAATCTGCAGCATATCTTATCAACCGTACTCCTTCAGGGGTGATTGAGTTTCAGAAGCTTCATACATTTTTGACCATCCCTTCTATGCCTAATTTGGAGCCCCGGGTGTTTGGGTGCACAGCCTATGTTCATATTCCCAAGCCTCAAACCAACAAGCTTGATCCCCGTGCCCGTAAGTGTATCTTTGTTGGTTATGCTGACTTCCAGAAGGGTTATCGATGTTATGATCCCCTTACTGGCACTTTACATGTCTCTCTTGATGTTGCTTTTCGTGAATCCGAGCCTTATTACTCAGGGGGAGCTTCTCAGTCTTCCCTTCAGGGGGAGAGAGGTTGTGAAGGGAATCCTCGTTCTATTATTGATTTTGATGTCTTTGAAGACTTGGAAAATTTGGAGGATACATTTGAGGGTAGAAAAAATTTGGAAACAGAAAATGCAGTTGCCGAACAGAGCATTGTGAATTCCGAAATAGACAATACGACTGCCGAACGAAGTGTTGCGAATTCCGAAACAGAAAATGCGACTGCCGAACAGAGTGTTGTGAATTCCGAGATAGAAGAGACGACTTTTCTGGATAGTTTGAATCAAAATCAAGACGTATCTGAAGCTCACACACAAGATATTCCCCCTTCTACATCACCAACTGAAGATCCCGGTCAGAATGATCCTCCTCAGGTACCCCTAAACTTTAATGAATCTTCTGGGTTAGAAAGTGTCGAACCTAGGAAATCACAAAGGGTTACCAAGGGAATTCCTAAGAAACAATATGAACCAGATATCAAAGCCAAAGCTAAATACCCTATAGATGCATTGACGGATCCAAAATGGACAAAGGCGATGAATGAAGAATTGGAAGCTCTTCAAAAGAATGCAACATGGGAACTAGTACCTATGCCGGTTGGAAAGAAGACTATTACAGCTCTTATTGTGTATGTTGATGACATGATTGTTACAGGGGATGATCCGAAAGAGATGAATGAGTTACAAAAGTATCTGTCAAAGGAGTTTGAAATGAAGGATCTGGGGCAACTGAAGTATTTTCTGGGTATTGAAGTTGCGAGGTCTAAGAAGGGAATTTCACTGTCACAGAGGAAGTATGTTCTTGACTTACTTACTGAAACGGGGATGCTGGACTGCAGTCCAATTGAGACACCCATTGAGATGAATCACAGACTTGCCATTTATCCTGATCAAATTCCAACTGATAAAGGAAGGTATCAACGTCTTGTAGGAAGGTTGATTTATCTTTCACATACTAGACCTGATATTGCTTATGCTGTGAGTGTTGTCAGTCAGTTTATGCATTGTCCTAGTGAAGAACATATGGATACAGTTTTTCGGATTTTGAGGTATTTGAAGATGGCGCCAGGTAAAGGATTACTGTTTGAGAAAAAGGATGAATTGGAAGTTGGGGGATACACAAATGTAGATTGGGCTGGTGATAAAACTGACAGGCGTTCTACATCTGGGTACTTCACTTTTGTAGGAGGGAACCTTGTCACTTGGCGTAGCAAGAAACAGAAAGTTGTGGCCAGATCAAGTGCAGAAGCTGAATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC RVT_2 TIR

Protein Analysis

686

Amino Acids

77.26

Weight (kDa)

5.38

Isoelectric Point (pI)

38.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
rve PF00665 83 - 132 7.7e-06 Integrase core domain
SH3_retrovirus PF25597 206 - 263 1.5e-24 Retroviral polymerase SH3-like domain
RVT_2 PF07727 475 - 554 9.9e-19 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000071)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G23160 AT4G23160
fragaria_vesca FvH4_2g08111 FvH4_2g17332 FvH4_2g18071 FvH4_2g20531 FvH4_2g20842 FvH4_2g20842 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g24231 FvH4_2g24232 FvH4_3g00831 FvH4_3g00831 FvH4_3g03561 FvH4_3g03561 FvH4_3g10282 FvH4_3g18165 FvH4_3g19021 FvH4_3g24071 FvH4_3g33123 FvH4_3g33970 FvH4_3g38851 FvH4_3g39133 FvH4_3g39271 FvH4_4g00981 FvH4_4g08191 FvH4_4g08311 FvH4_4g08311 FvH4_4g08311 FvH4_4g09341 FvH4_4g12550 FvH4_4g12550 FvH4_4g12550 FvH4_4g13391 FvH4_4g14842 FvH4_4g27901 FvH4_5g11561 FvH4_5g15611 FvH4_5g17991 FvH4_5g27871 FvH4_5g29995 FvH4_5g39662 FvH4_6g02392 FvH4_6g12781 FvH4_6g20106 FvH4_6g20106 FvH4_6g20106 FvH4_6g30872 FvH4_6g34901 FvH4_6g35632 FvH4_6g36661 FvH4_6g43795 FvH4_6g44611 FvH4_7g01791 FvH4_7g04041 FvH4_7g12551 FvH4_7g23351
malus_domestica MD00G1134200.v1.1 MD01G1096500.v1.1 MD01G1128200.v1.1 MD02G1250500.v1.1 MD02G1294900.v1.1 MD03G1121800.v1.1 MD04G1021400.v1.1 MD04G1051100.v1.1 MD04G1051300.v1.1 MD04G1099000.v1.1 MD05G1047900.v1.1 MD05G1298000.v1.1 MD06G1064200.v1.1 MD06G1120600.v1.1 MD07G1013900.v1.1 MD09G1226900.v1.1 MD10G1196700.v1.1 MD10G1307000.v1.1 MD10G1338900.v1.1 MD11G1107300.v1.1 MD11G1138300.v1.1 MD11G1236700.v1.1 MD12G1032500.v1.1 MD12G1150100.v1.1 MD12G1247800.v1.1 MD17G1267900.v1.1
pyrus_communis pycom02g03660 pycom02g13370 pycom02g14840 pycom02g18400 pycom02g18880 pycom02g22740 pycom04g08800 pycom04g15770 pycom05g07980 pycom05g19640 pycom06g09360 pycom07g13160 pycom08g11820 pycom08g21740 pycom09g19980 pycom10g04810 pycom10g05420 pycom10g14650 pycom11g03140 pycom11g21550 pycom12g14740 pycom13g01600 pycom13g29510 pycom14g07060 pycom15g01990 pycom15g19850 pycom15g30860 pycom16g15290 pycom16g16250 pycom16g25390 pycom17g17270 pycom520g00070
rosa_chinensis RchiOBHm_Chr1g0316691 RchiOBHm_Chr1g0320751 RchiOBHm_Chr1g0320771 RchiOBHm_Chr1g0322231 RchiOBHm_Chr1g0322861 RchiOBHm_Chr1g0328471 RchiOBHm_Chr1g0333321 RchiOBHm_Chr1g0337871 RchiOBHm_Chr1g0339051 RchiOBHm_Chr1g0349861 RchiOBHm_Chr1g0361951 RchiOBHm_Chr1g0365931 RchiOBHm_Chr1g0365981 RchiOBHm_Chr1g0377711 RchiOBHm_Chr1g0381581 RchiOBHm_Chr1g0382741 RchiOBHm_Chr1g0383501 RchiOBHm_Chr2g0101201 RchiOBHm_Chr2g0113601 RchiOBHm_Chr2g0124031 RchiOBHm_Chr2g0135481 RchiOBHm_Chr2g0148361 RchiOBHm_Chr2g0150101 RchiOBHm_Chr2g0154181 RchiOBHm_Chr2g0156071 RchiOBHm_Chr2g0166521 RchiOBHm_Chr2g0166821 RchiOBHm_Chr3g0448011 RchiOBHm_Chr3g0450941 RchiOBHm_Chr3g0450961 RchiOBHm_Chr3g0451051 RchiOBHm_Chr3g0451721 RchiOBHm_Chr3g0453371 RchiOBHm_Chr3g0454881 RchiOBHm_Chr3g0457421 RchiOBHm_Chr3g0457661 RchiOBHm_Chr3g0460011 RchiOBHm_Chr3g0461531 RchiOBHm_Chr3g0461981 RchiOBHm_Chr3g0463471 RchiOBHm_Chr3g0466641 RchiOBHm_Chr3g0468181 RchiOBHm_Chr3g0483351 RchiOBHm_Chr4g0394001 RchiOBHm_Chr4g0397261 RchiOBHm_Chr4g0404531 RchiOBHm_Chr4g0410841 RchiOBHm_Chr4g0415501 RchiOBHm_Chr4g0425221 RchiOBHm_Chr4g0430811 RchiOBHm_Chr5g0010831 RchiOBHm_Chr5g0016831 RchiOBHm_Chr5g0016851 RchiOBHm_Chr5g0031351 RchiOBHm_Chr5g0032151 RchiOBHm_Chr5g0041201 RchiOBHm_Chr5g0042191 RchiOBHm_Chr5g0064121 RchiOBHm_Chr5g0066601 RchiOBHm_Chr5g0078371 RchiOBHm_Chr5g0079271 RchiOBHm_Chr6g0263751 RchiOBHm_Chr6g0285111 RchiOBHm_Chr6g0298961 RchiOBHm_Chr6g0300481 RchiOBHm_Chr6g0303211 RchiOBHm_Chr7g0192341 RchiOBHm_Chr7g0196171 RchiOBHm_Chr7g0200281 RchiOBHm_Chr7g0200551 RchiOBHm_Chr7g0207611 RchiOBHm_Chr7g0212421 RchiOBHm_Chr7g0214991 RchiOBHm_Chr7g0219211 RchiOBHm_Chr7g0242371
rosa_laevigata RLG00000002389 RLG00000007980
rosa_roxburghii Rroxscaffold_1G00053480 Rroxscaffold_2G00090890 Rroxscaffold_2G00099660 Rroxscaffold_2G00134510 Rroxscaffold_3G00221450 Rroxscaffold_3G00240550 Rroxscaffold_4G00305710 Rroxscaffold_4G00306360 Rroxscaffold_4G00306800 Rroxscaffold_4G00329090 Rroxscaffold_5G00382750 Rroxscaffold_5G00385900 Rroxscaffold_6G00403080 Rroxscaffold_7G00172890 Rroxscaffold_7G00186690
rosa_samantha Rh1DG425600
rosa_wichuraiana Rw0G001640 Rw0G009160 Rw0G010480 Rw0G010520 Rw0G013850 Rw0G017170 Rw0G018520 Rw0G019280 Rw0G022780 Rw1G000360 Rw1G001410 Rw1G001630 Rw1G002100 Rw1G006810 Rw1G010680 Rw1G012700 Rw1G016160 Rw1G022180 Rw1G023580 Rw1G025640 Rw1G026310 Rw1G027230 Rw1G028110 Rw1G034180 Rw2G004990 Rw2G005840 Rw2G007350 Rw2G024730 Rw2G025580 Rw2G026670 Rw2G027210 Rw2G029060 Rw2G031560 Rw2G042190 Rw2G043850 Rw2G045990 Rw2G046130 Rw2G049290 Rw2G049310 Rw2G049790 Rw2G052250 Rw3G004350 Rw3G013100 Rw3G015280 Rw3G015720 Rw3G024630 Rw3G026470 Rw3G027840 Rw3G028960 Rw3G029130 Rw3G029160 Rw4G000280 Rw4G006650 Rw4G008970 Rw4G009310 Rw4G011730 Rw4G012000 Rw4G012610 Rw4G014300 Rw4G014690 Rw4G015190 Rw4G016470 Rw4G020750 Rw4G025060 Rw4G025080 Rw5G005610 Rw5G010380 Rw5G013970 Rw5G015130 Rw5G015250 Rw5G017640 Rw5G019910 Rw5G022410 Rw5G023550 Rw5G029710 Rw5G037650 Rw5G038280 Rw5G038570 Rw5G041550 Rw5G042600 Rw5G043910 Rw5G047850 Rw5G048200 Rw5G049920 Rw6G000260 Rw6G000530 Rw6G001710 Rw6G005090 Rw6G006730 Rw6G009310 Rw6G010950 Rw6G011630 Rw6G012080 Rw6G012750 Rw6G015970 Rw6G020700 Rw6G024350 Rw7G008540 Rw7G016620 Rw7G019400 Rw7G020010 Rw7G024240 Rw7G025630 Rw7G027550 Rw7G027770 Rw7G027960 Rw7G028450 Rw7G031280 Rw7G031970 Rw7G032180 Rw7G033590 Rw7G033720 Rw7G033890 Rw7G041800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1177
AccB1I GGYRCC 2 cut(s) 1177, 1864
AclWI GGATC 9 cut(s) 150, 656, 722, 1145, 1160, 1313, 1326, 1457, 1527
AcoI YGGCCR 1 cut(s) 2031
AcuI CTGAAG 5 cut(s) 519, 803, 1125, 1167, 1553
AcyI GRCGYC 1 cut(s) 1865
AfaI GTAC 5 cut(s) 474, 529, 1179, 1389, 1973
AfiI CCNNNNNNNGG 4 cut(s) 737, 822, 823, 1874
AflIII ACRYGT 1 cut(s) 748
AgsI TTSAA 7 cut(s) 22, 878, 1084, 1364, 1511, 1553, 1858
AhlI ACTAGT 1 cut(s) 1384
AjnI CCWGG 2 cut(s) 138, 1867
AjuI GAANNNNNNNTTGG 4 cut(s) 1334, 1366, 1893, 1925
AloI GAACNNNNNNTCC 2 cut(s) 835, 867
AluBI AGCT 9 cut(s) 188, 559, 658, 803, 1109, 1292, 1358, 1421, 2051
AluI AGCT 9 cut(s) 188, 559, 658, 803, 1109, 1292, 1358, 1421, 2051
Alw21I GWGCWC 1 cut(s) 620
Alw26I GTCTC 4 cut(s) 146, 757, 1055, 1643
Alw44I GTGCAC 1 cut(s) 616
AlwI GGATC 9 cut(s) 150, 656, 722, 1145, 1160, 1313, 1326, 1457, 1527
AlwNI CAGNNNCTG 2 cut(s) 155, 2051
Ama87I CYCGRG 1 cut(s) 603
AoxI GGCC 2 cut(s) 331, 2031
ApaLI GTGCAC 1 cut(s) 616
ApeKI GCWGC 1 cut(s) 509
AseI ATTAAT 1 cut(s) 198
Asp700I GAANNNNTTC 2 cut(s) 444, 1359
Asp718I GGTACC 1 cut(s) 1177
AspA2I CCTAGG 1 cut(s) 1223
AspLEI GCGC 1 cut(s) 1867
AspS9I GGNCC 2 cut(s) 332, 480
AsuC2I CCSGG 3 cut(s) 604, 605, 1155
AsuHPI GGTGA 3 cut(s) 553, 1131, 1952
AvaI CYCGRG 1 cut(s) 603
AvaII GGWCC 1 cut(s) 480
AvrII CCTAGG 1 cut(s) 1223
AxyI CCTNAGG 1 cut(s) 1173
BaeGI GKGCMC 2 cut(s) 620, 673
BaeI ACNNNNGTAYC 2 cut(s) 1475, 1508
BalI TGGCCA 1 cut(s) 2033
BamHI GGATCC 1 cut(s) 1318
BanI GGYRCC 2 cut(s) 1177, 1864
BanII GRGCYC 1 cut(s) 603
BbsI GAAGAC 3 cut(s) 804, 885, 1415
Bbv12I GWGCWC 1 cut(s) 620
BbvI GCAGC 1 cut(s) 521
BccI CCATC 4 cut(s) 296, 430, 584, 1855
BciT130I CCWGG 2 cut(s) 140, 1869
BciVI GTATCC 3 cut(s) 892, 1822, 1910
BclI TGATCA 2 cut(s) 55, 1690
BcnI CCSGG 3 cut(s) 604, 605, 1155
BcoDI GTCTC 4 cut(s) 146, 757, 1055, 1643
BcuI ACTAGT 1 cut(s) 1384
BfaI CTAG 5 cut(s) 75, 1224, 1385, 1758, 1812
BfmI CTRYAG 3 cut(s) 507, 1302, 1636
BfoI RGCGCY 1 cut(s) 1868
BfuI GTATCC 3 cut(s) 892, 1822, 1910
BisI GCNGC 1 cut(s) 510
BlnI CCTAGG 1 cut(s) 1223
BlsI GCNGC 1 cut(s) 511
Bme1390I CCNGG 5 cut(s) 140, 604, 605, 1155, 1869
Bme18I GGWCC 1 cut(s) 480
BmeT110I CYCGRG 1 cut(s) 603
BmgT120I GGNCC 2 cut(s) 332, 480
BmiI GGNNCC 5 cut(s) 600, 1179, 1320, 1866, 1994
BmrFI CCNGG 5 cut(s) 140, 604, 605, 1155, 1869
BmsI GCATC 4 cut(s) 59, 181, 1297, 1617
BoxI GACNNNNGTC 2 cut(s) 75, 1638
BpiI GAAGAC 3 cut(s) 804, 885, 1415
BpmI CTGGAG 1 cut(s) 177
BpuMI CCSGG 3 cut(s) 604, 605, 1155
Bsa29I ATCGAT 1 cut(s) 718
BsaHI GRCGYC 1 cut(s) 1865
BsaJI CCNNGG 5 cut(s) 476, 602, 603, 1223, 1245
BsaXI ACNNNNNCTCC 4 cut(s) 309, 339, 483, 513
Bsc4I CCNNNNNNNGG 4 cut(s) 737, 822, 823, 1874
Bse118I RCCGGY 1 cut(s) 1396
Bse1I ACTGG 3 cut(s) 160, 352, 742
Bse21I CCTNAGG 1 cut(s) 1173
BseBI CCWGG 2 cut(s) 140, 1869
BseCI ATCGAT 1 cut(s) 718
BseDI CCNNGG 5 cut(s) 476, 602, 603, 1223, 1245
BseGI GGATG 5 cut(s) 288, 576, 1465, 1632, 1903
BseLI CCNNNNNNNGG 4 cut(s) 737, 822, 823, 1874
BseMII CTCAG 4 cut(s) 287, 807, 821, 1187
BseNI ACTGG 3 cut(s) 160, 352, 742
BseRI GAGGAG 2 cut(s) 384, 1161
BseSI GKGCMC 2 cut(s) 620, 673
BseXI GCAGC 1 cut(s) 521
BshFI GGCC 2 cut(s) 333, 2033
BshNI GGYRCC 2 cut(s) 1177, 1864
BshVI ATCGAT 1 cut(s) 718
BsiHKAI GWGCWC 1 cut(s) 620
BsiHKCI CYCGRG 1 cut(s) 603
BsiSI CCGG 3 cut(s) 604, 1155, 1397
BslI CCNNNNNNNGG 4 cut(s) 737, 822, 823, 1874
BsmAI GTCTC 4 cut(s) 146, 757, 1055, 1643
BsmBI CGTCTC 1 cut(s) 1055
BsmI GAATGC 2 cut(s) 217, 1375
BsnI GGCC 2 cut(s) 333, 2033
BsoBI CYCGRG 1 cut(s) 603
Bsp1286I GDGCHC 3 cut(s) 603, 620, 673
BspANI GGCC 2 cut(s) 333, 2033
BspCNI CTCAG 4 cut(s) 286, 806, 820, 1186
BspDI ATCGAT 1 cut(s) 718
BspLI GGNNCC 5 cut(s) 600, 1179, 1320, 1866, 1994
BspMAI CTGCAG 2 cut(s) 511, 1640
BspPI GGATC 9 cut(s) 150, 656, 722, 1145, 1160, 1313, 1326, 1457, 1527
BspQI GCTCTTC 1 cut(s) 1365
BspT107I GGYRCC 2 cut(s) 1177, 1864
BsrFI RCCGGY 1 cut(s) 1396
BsrI ACTGG 3 cut(s) 160, 352, 742
BssAI RCCGGY 1 cut(s) 1396
BssECI CCNNGG 5 cut(s) 476, 602, 603, 1223, 1245
BssNI GRCGYC 1 cut(s) 1865
BssT1I CCWWGG 2 cut(s) 1223, 1245
Bst2UI CCWGG 2 cut(s) 140, 1869
Bst4CI ACNGT 4 cut(s) 527, 1584, 1834, 1884
Bst6I CTCTTC 2 cut(s) 1053, 1365
BstACI GRCGYC 1 cut(s) 1865
BstC8I GCNNGC 1 cut(s) 186
BstDEI CTNAG 6 cut(s) 273, 793, 807, 1173, 1257, 1566
BstEII GGTNACC 1 cut(s) 1240
BstF5I GGATG 5 cut(s) 288, 576, 1465, 1632, 1903
BstH2I RGCGCY 1 cut(s) 1868
BstHHI GCGC 1 cut(s) 1867
BstMAI GTCTC 4 cut(s) 146, 757, 1055, 1643
BstMWI GCNNNNNNNGC 1 cut(s) 221
BstNI CCWGG 2 cut(s) 140, 1869
BstNSI RCATGY 1 cut(s) 752
BstPAI GACNNNNGTC 2 cut(s) 75, 1638
BstPI GGTNACC 1 cut(s) 1240
BstSCI CCNGG 5 cut(s) 138, 602, 603, 1153, 1867
BstSFI CTRYAG 3 cut(s) 507, 1302, 1636
BstSLI GKGCMC 2 cut(s) 620, 673
BstV1I GCAGC 1 cut(s) 521
BstV2I GAAGAC 3 cut(s) 804, 885, 1415
BstX2I RGATCY 4 cut(s) 142, 1150, 1318, 1519
BstXI CCANNNNNNTGG 1 cut(s) 359
BstYI RGATCY 4 cut(s) 142, 1150, 1318, 1519
Bsu15I ATCGAT 1 cut(s) 718
Bsu36I CCTNAGG 1 cut(s) 1173
BsuI GTATCC 3 cut(s) 892, 1822, 1910
BsuRI GGCC 2 cut(s) 333, 2033
BsuTUI ATCGAT 1 cut(s) 718
BtgZI GCGATG 1 cut(s) 1352
BtsCI GGATG 5 cut(s) 288, 576, 1465, 1632, 1903
BtsIMutI CAGTG 1 cut(s) 1580
Cac8I GCNNGC 1 cut(s) 186
CaiI CAGNNNCTG 2 cut(s) 155, 2051
CfoI GCGC 1 cut(s) 1867
Cfr10I RCCGGY 1 cut(s) 1396
Cfr13I GGNCC 2 cut(s) 332, 480
Cfr9I CCCGGG 1 cut(s) 603
ClaI ATCGAT 1 cut(s) 718
Csp6I GTAC 5 cut(s) 473, 528, 1178, 1388, 1972
CviAII CATG 6 cut(s) 30, 359, 466, 749, 1377, 1444
CviQI GTAC 5 cut(s) 473, 528, 1178, 1388, 1972
DdeI CTNAG 6 cut(s) 273, 793, 807, 1173, 1257, 1566
DinI GGCGCC 1 cut(s) 1866
EaeI YGGCCR 1 cut(s) 2031
Eam1104I CTCTTC 2 cut(s) 1053, 1365
EarI CTCTTC 2 cut(s) 1053, 1365
Eco130I CCWWGG 2 cut(s) 1223, 1245
Eco24I GRGCYC 1 cut(s) 603
Eco32I GATATC 1 cut(s) 1279
Eco47I GGWCC 1 cut(s) 480
Eco57I CTGAAG 5 cut(s) 519, 803, 1125, 1167, 1553
Eco81I CCTNAGG 1 cut(s) 1173
Eco88I CYCGRG 1 cut(s) 603
Eco91I GGTNACC 1 cut(s) 1240
EcoO65I GGTNACC 1 cut(s) 1240
EcoRI GAATTC 5 cut(s) 363, 961, 1003, 1045, 1251
EcoRII CCWGG 2 cut(s) 138, 1867
EcoRV GATATC 1 cut(s) 1279
EcoT14I CCWWGG 2 cut(s) 1223, 1245
EcoT22I ATGCAT 2 cut(s) 1312, 1806
EcoT38I GRGCYC 1 cut(s) 603
EgeI GGCGCC 1 cut(s) 1866
EheI GGCGCC 1 cut(s) 1866
ErhI CCWWGG 2 cut(s) 1223, 1245
Esp3I CGTCTC 1 cut(s) 1055
FaeI CATG 6 cut(s) 33, 362, 469, 752, 1380, 1447
FalI AAGNNNNNCTT 2 cut(s) 668, 700
FatI CATG 6 cut(s) 29, 358, 465, 748, 1376, 1443
FauNDI CATATG 2 cut(s) 60, 1824
FbaI TGATCA 2 cut(s) 55, 1690
Fnu4HI GCNGC 1 cut(s) 510
FokI GGATG 5 cut(s) 275, 563, 1472, 1639, 1910
FriOI GRGCYC 1 cut(s) 603
Fsp4HI GCNGC 1 cut(s) 510
FspBI CTAG 5 cut(s) 75, 1224, 1385, 1758, 1812
GlaI GCGC 1 cut(s) 1866
GluI GCNGC 1 cut(s) 510
GsuI CTGGAG 1 cut(s) 177
HaeII RGCGCY 1 cut(s) 1868
HaeIII GGCC 2 cut(s) 333, 2033
HapII CCGG 3 cut(s) 604, 1155, 1397
HhaI GCGC 1 cut(s) 1867
Hin1I GRCGYC 1 cut(s) 1865
Hin1II CATG 6 cut(s) 33, 362, 469, 752, 1380, 1447
Hin6I GCGC 1 cut(s) 1865
HinP1I GCGC 1 cut(s) 1865
HindIII AAGCTT 2 cut(s) 557, 656
HinfI GANTC 7 cut(s) 91, 100, 776, 844, 1084, 1196, 1666
HpaII CCGG 3 cut(s) 604, 1155, 1397
HphI GGTGA 3 cut(s) 553, 1131, 1952
Hpy166II GTNNAC 1 cut(s) 618
Hpy188III TCNNGA 8 cut(s) 80, 706, 758, 773, 1073, 1094, 1604, 1688
Hpy8I GTNNAC 1 cut(s) 618
HpyCH4III ACNGT 4 cut(s) 527, 1584, 1834, 1884
HpyCH4IV ACGT 2 cut(s) 1098, 1723
HpyF10VI GCNNNNNNNGC 1 cut(s) 221
HpyF3I CTNAG 6 cut(s) 273, 793, 807, 1173, 1257, 1566
HpySE526I ACGT 2 cut(s) 1098, 1723
Hsp92I GRCGYC 1 cut(s) 1865
Hsp92II CATG 6 cut(s) 33, 362, 469, 752, 1380, 1447
HspAI GCGC 1 cut(s) 1865
KasI GGCGCC 1 cut(s) 1864
KpnI GGTACC 1 cut(s) 1181
Ksp22I TGATCA 2 cut(s) 55, 1690
LguI GCTCTTC 1 cut(s) 1365
LmnI GCTCC 2 cut(s) 598, 800
Lsp1109I GCAGC 1 cut(s) 521
LweI GCATC 4 cut(s) 59, 181, 1297, 1617
MaeI CTAG 5 cut(s) 75, 1224, 1385, 1758, 1812
MaeII ACGT 2 cut(s) 1098, 1723
MaeIII GTNAC 6 cut(s) 354, 1240, 1450, 1482, 1584, 1999
MfeI CAATTG 1 cut(s) 1644
MflI RGATCY 4 cut(s) 142, 1150, 1318, 1519
MhlI GDGCHC 3 cut(s) 603, 620, 673
MlsI TGGCCA 1 cut(s) 2033
MluNI TGGCCA 1 cut(s) 2033
Mly113I GGCGCC 1 cut(s) 1865
MlyI GAGTC 1 cut(s) 85
MmeI TCCRAC 2 cut(s) 1381, 1724
Mox20I TGGCCA 1 cut(s) 2033
Mph1103I ATGCAT 2 cut(s) 1312, 1806
MroXI GAANNNNTTC 2 cut(s) 444, 1359
MscI TGGCCA 1 cut(s) 2033
MseI TTAA 2 cut(s) 198, 1191
MslI CAYNNNNRTG 2 cut(s) 293, 1661
Msp20I TGGCCA 1 cut(s) 2033
MspI CCGG 3 cut(s) 604, 1155, 1397
MspR9I CCNGG 5 cut(s) 140, 604, 605, 1155, 1869
MunI CAATTG 1 cut(s) 1644
Mva1269I GAATGC 2 cut(s) 217, 1375
MvaI CCWGG 2 cut(s) 140, 1869
MwoI GCNNNNNNNGC 1 cut(s) 221
NarI GGCGCC 1 cut(s) 1865
NciI CCSGG 3 cut(s) 604, 605, 1155
NdeI CATATG 2 cut(s) 60, 1824
NlaIII CATG 6 cut(s) 33, 362, 469, 752, 1380, 1447
NlaIV GGNNCC 5 cut(s) 600, 1179, 1320, 1866, 1994
NmeAIII GCCGAG 1 cut(s) 73
NmuCI GTSAC 3 cut(s) 354, 1584, 1999
NsiI ATGCAT 2 cut(s) 1312, 1806
NspI RCATGY 1 cut(s) 752
PciI ACATGT 1 cut(s) 748
PciSI GCTCTTC 1 cut(s) 1365
PctI GAATGC 2 cut(s) 217, 1375
PdmI GAANNNNTTC 2 cut(s) 444, 1359
PfeI GAWTC 6 cut(s) 100, 776, 844, 1084, 1196, 1666
PkrI GCNGC 1 cut(s) 511
PleI GAGTC 1 cut(s) 85
PluTI GGCGCC 1 cut(s) 1868
PpsI GAGTC 1 cut(s) 85
PscI ACATGT 1 cut(s) 748
PshAI GACNNNNGTC 2 cut(s) 75, 1638
PshBI ATTAAT 1 cut(s) 198
Psp6I CCWGG 2 cut(s) 138, 1867
PspEI GGTNACC 1 cut(s) 1240
PspGI CCWGG 2 cut(s) 138, 1867
PspN4I GGNNCC 5 cut(s) 600, 1179, 1320, 1866, 1994
PspPI GGNCC 2 cut(s) 332, 480
PstI CTGCAG 2 cut(s) 511, 1640
PstNI CAGNNNCTG 2 cut(s) 155, 2051
PsuI RGATCY 4 cut(s) 142, 1150, 1318, 1519
RsaI GTAC 5 cut(s) 474, 529, 1179, 1389, 1973
RsaNI GTAC 5 cut(s) 473, 528, 1178, 1388, 1972
RseI CAYNNNNRTG 2 cut(s) 293, 1661
SapI GCTCTTC 1 cut(s) 1365
SaqAI TTAA 2 cut(s) 198, 1191
SatI GCNGC 1 cut(s) 510
Sau96I GGNCC 2 cut(s) 332, 480
SchI GAGTC 1 cut(s) 85
ScrFI CCNGG 5 cut(s) 140, 604, 605, 1155, 1869
SduI GDGCHC 3 cut(s) 603, 620, 673
SfaNI GCATC 4 cut(s) 59, 181, 1297, 1617
SfcI CTRYAG 3 cut(s) 507, 1302, 1636
SfoI GGCGCC 1 cut(s) 1866
SinI GGWCC 1 cut(s) 480
SmaI CCCGGG 1 cut(s) 605
SmiMI CAYNNNNRTG 2 cut(s) 293, 1661
SpeI ACTAGT 1 cut(s) 1384
SspDI GGCGCC 1 cut(s) 1864
SspMI CTAG 5 cut(s) 75, 1224, 1385, 1758, 1812
StyD4I CCNGG 5 cut(s) 138, 602, 603, 1153, 1867
StyI CCWWGG 2 cut(s) 1223, 1245
TaaI ACNGT 4 cut(s) 527, 1584, 1834, 1884
TaiI ACGT 2 cut(s) 1101, 1726
TaqI TCGA 3 cut(s) 249, 718, 1218
TaqII GACCGA 1 cut(s) 468
TfiI GAWTC 6 cut(s) 100, 776, 844, 1084, 1196, 1666
Tru1I TTAA 2 cut(s) 198, 1191
Tru9I TTAA 2 cut(s) 198, 1191
TscAI CASTG 1 cut(s) 1587
TseFI GTSAC 3 cut(s) 354, 1584, 1999
TseI GCWGC 1 cut(s) 509
Tsp45I GTSAC 3 cut(s) 354, 1584, 1999
TspGWI ACGGA 2 cut(s) 433, 1331
TspMI CCCGGG 1 cut(s) 603
TspRI CASTG 1 cut(s) 1587
VneI GTGCAC 1 cut(s) 616
VpaK11BI GGWCC 1 cut(s) 480
VspI ATTAAT 1 cut(s) 198
XceI RCATGY 1 cut(s) 752
XmaI CCCGGG 1 cut(s) 603
XmaJI CCTAGG 1 cut(s) 1223
XmnI GAANNNNTTC 2 cut(s) 444, 1359
XspI CTAG 5 cut(s) 75, 1224, 1385, 1758, 1812
Zsp2I ATGCAT 2 cut(s) 1312, 1806
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.