Protein strawberry notch
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_2 | PF07727 | 148 - 386 | 2.6e-77 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1175 |
| Acc36I | ACCTGC | 1 cut(s) | 1175 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1222 |
| AciI | CCGC | 1 cut(s) | 471 |
| AclWI | GGATC | 5 cut(s) | 509, 922, 1366, 1864, 1868 |
| AcoI | YGGCCR | 1 cut(s) | 1068 |
| AcsI | RAATTY | 2 cut(s) | 515, 973 |
| AcuI | CTGAAG | 1 cut(s) | 168 |
| AdeI | CACNNNGTG | 1 cut(s) | 1732 |
| AfaI | GTAC | 3 cut(s) | 1214, 1474, 1553 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 764, 1222, 1254 |
| AflIII | ACRYGT | 1 cut(s) | 1519 |
| AjnI | CCWGG | 2 cut(s) | 398, 748 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 433, 465 |
| Alw26I | GTCTC | 3 cut(s) | 535, 596, 1632 |
| AlwI | GGATC | 5 cut(s) | 509, 922, 1366, 1864, 1868 |
| Ama87I | CYCGRG | 1 cut(s) | 825 |
| AoxI | GGCC | 4 cut(s) | 671, 1068, 1256, 1563 |
| ApeKI | GCWGC | 6 cut(s) | 11, 272, 329, 739, 1181, 1661 |
| ApoI | RAATTY | 2 cut(s) | 515, 973 |
| AseI | ATTAAT | 1 cut(s) | 987 |
| AspS9I | GGNCC | 1 cut(s) | 1701 |
| AsuHPI | GGTGA | 4 cut(s) | 813, 980, 1199, 1237 |
| AvaI | CYCGRG | 1 cut(s) | 825 |
| AvaII | GGWCC | 1 cut(s) | 1701 |
| BalI | TGGCCA | 1 cut(s) | 1070 |
| BbsI | GAAGAC | 1 cut(s) | 1681 |
| BbvI | GCAGC | 6 cut(s) | 23, 259, 316, 751, 1193, 1648 |
| BccI | CCATC | 4 cut(s) | 250, 521, 1031, 1842 |
| BciT130I | CCWGG | 2 cut(s) | 400, 750 |
| BciVI | GTATCC | 2 cut(s) | 228, 291 |
| BcoDI | GTCTC | 3 cut(s) | 535, 596, 1632 |
| BfaI | CTAG | 7 cut(s) | 92, 1157, 1254, 1478, 1493, 1604, 1613 |
| BfmI | CTRYAG | 2 cut(s) | 63, 1362 |
| BfuAI | ACCTGC | 1 cut(s) | 1175 |
| BfuI | GTATCC | 2 cut(s) | 228, 291 |
| BglII | AGATCT | 1 cut(s) | 1030 |
| BisI | GCNGC | 6 cut(s) | 12, 273, 330, 740, 1182, 1662 |
| BlsI | GCNGC | 6 cut(s) | 13, 274, 331, 741, 1183, 1663 |
| Bme1390I | CCNGG | 2 cut(s) | 400, 750 |
| Bme18I | GGWCC | 1 cut(s) | 1701 |
| BmeT110I | CYCGRG | 1 cut(s) | 825 |
| BmgT120I | GGNCC | 1 cut(s) | 1701 |
| BmrFI | CCNGG | 2 cut(s) | 400, 750 |
| BmsI | GCATC | 1 cut(s) | 1411 |
| BpiI | GAAGAC | 1 cut(s) | 1681 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1362, 1394 |
| BpuEI | CTTGAG | 3 cut(s) | 980, 1337, 1519 |
| BsaJI | CCNNGG | 1 cut(s) | 615 |
| BsaWI | WCCGGW | 1 cut(s) | 1684 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 37, 43, 67, 73, 595, 625 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 764, 1222, 1254 |
| Bse1I | ACTGG | 2 cut(s) | 970, 1468 |
| Bse3DI | GCAATG | 4 cut(s) | 889, 1566, 1671, 1671 |
| BseBI | CCWGG | 2 cut(s) | 400, 750 |
| BseDI | CCNNGG | 1 cut(s) | 615 |
| BseGI | GGATG | 5 cut(s) | 694, 754, 893, 1203, 1630 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 764, 1222, 1254 |
| BseMI | GCAATG | 4 cut(s) | 889, 1566, 1671, 1671 |
| BseMII | CTCAG | 3 cut(s) | 465, 859, 1637 |
| BseNI | ACTGG | 2 cut(s) | 970, 1468 |
| BseRI | GAGGAG | 1 cut(s) | 1143 |
| BseXI | GCAGC | 6 cut(s) | 23, 259, 316, 751, 1193, 1648 |
| BseYI | CCCAGC | 1 cut(s) | 1433 |
| BsgI | GTGCAG | 1 cut(s) | 1560 |
| BshFI | GGCC | 4 cut(s) | 673, 1070, 1258, 1565 |
| BsiHKCI | CYCGRG | 1 cut(s) | 825 |
| BsiSI | CCGG | 1 cut(s) | 1685 |
| BslFI | GGGAC | 1 cut(s) | 266 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 764, 1222, 1254 |
| BsmAI | GTCTC | 3 cut(s) | 535, 596, 1632 |
| BsmFI | GGGAC | 1 cut(s) | 266 |
| BsmI | GAATGC | 1 cut(s) | 1183 |
| BsnI | GGCC | 4 cut(s) | 673, 1070, 1258, 1565 |
| BsoBI | CYCGRG | 1 cut(s) | 825 |
| Bsp143I | GATC | 9 cut(s) | 501, 914, 952, 1030, 1358, 1609, 1786, 1856, 1873 |
| BspACI | CCGC | 1 cut(s) | 471 |
| BspANI | GGCC | 4 cut(s) | 673, 1070, 1258, 1565 |
| BspCNI | CTCAG | 3 cut(s) | 466, 858, 1636 |
| BspHI | TCATGA | 1 cut(s) | 1380 |
| BspMI | ACCTGC | 1 cut(s) | 1175 |
| BspPI | GGATC | 5 cut(s) | 509, 922, 1366, 1864, 1868 |
| BsrDI | GCAATG | 4 cut(s) | 889, 1566, 1671, 1671 |
| BsrI | ACTGG | 2 cut(s) | 970, 1468 |
| BssECI | CCNNGG | 1 cut(s) | 615 |
| BssMI | GATC | 9 cut(s) | 501, 914, 952, 1030, 1358, 1609, 1786, 1856, 1873 |
| Bst2UI | CCWGG | 2 cut(s) | 400, 750 |
| Bst4CI | ACNGT | 3 cut(s) | 67, 634, 1768 |
| Bst6I | CTCTTC | 3 cut(s) | 168, 180, 414 |
| BstC8I | GCNNGC | 4 cut(s) | 144, 327, 1302, 1531 |
| BstDEI | CTNAG | 3 cut(s) | 474, 845, 1623 |
| BstDSI | CCRYGG | 1 cut(s) | 615 |
| BstF5I | GGATG | 5 cut(s) | 694, 754, 893, 1203, 1630 |
| BstKTI | GATC | 9 cut(s) | 504, 917, 955, 1033, 1361, 1612, 1789, 1859, 1876 |
| BstMAI | GTCTC | 3 cut(s) | 535, 596, 1632 |
| BstMBI | GATC | 9 cut(s) | 501, 914, 952, 1030, 1358, 1609, 1786, 1856, 1873 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 617, 1430 |
| BstNI | CCWGG | 2 cut(s) | 400, 750 |
| BstNSI | RCATGY | 3 cut(s) | 329, 1304, 1523 |
| BstSCI | CCNGG | 2 cut(s) | 398, 748 |
| BstSFI | CTRYAG | 2 cut(s) | 63, 1362 |
| BstV1I | GCAGC | 6 cut(s) | 23, 259, 316, 751, 1193, 1648 |
| BstV2I | GAAGAC | 1 cut(s) | 1681 |
| BstX2I | RGATCY | 4 cut(s) | 501, 914, 1030, 1358 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 249, 527 |
| BstYI | RGATCY | 4 cut(s) | 501, 914, 1030, 1358 |
| BsuI | GTATCC | 2 cut(s) | 228, 291 |
| BsuRI | GGCC | 4 cut(s) | 673, 1070, 1258, 1565 |
| BtgI | CCRYGG | 1 cut(s) | 615 |
| BtsCI | GGATG | 5 cut(s) | 694, 754, 893, 1203, 1630 |
| BtsI | GCAGTG | 2 cut(s) | 663, 1281 |
| BtsIMutI | CAGTG | 2 cut(s) | 663, 1281 |
| BveI | ACCTGC | 1 cut(s) | 1175 |
| Cac8I | GCNNGC | 4 cut(s) | 144, 327, 1302, 1531 |
| CciI | TCATGA | 1 cut(s) | 1380 |
| Cfr13I | GGNCC | 1 cut(s) | 1701 |
| Csp6I | GTAC | 3 cut(s) | 1213, 1473, 1552 |
| CviQI | GTAC | 3 cut(s) | 1213, 1473, 1552 |
| DdeI | CTNAG | 3 cut(s) | 474, 845, 1623 |
| DpnI | GATC | 9 cut(s) | 503, 916, 954, 1032, 1360, 1611, 1788, 1858, 1875 |
| DpnII | GATC | 9 cut(s) | 501, 914, 952, 1030, 1358, 1609, 1786, 1856, 1873 |
| DraIII | CACNNNGTG | 1 cut(s) | 1732 |
| EaeI | YGGCCR | 1 cut(s) | 1068 |
| Eam1104I | CTCTTC | 3 cut(s) | 168, 180, 414 |
| EarI | CTCTTC | 3 cut(s) | 168, 180, 414 |
| Eco147I | AGGCCT | 1 cut(s) | 1258 |
| Eco32I | GATATC | 2 cut(s) | 1264, 1349 |
| Eco47I | GGWCC | 1 cut(s) | 1701 |
| Eco57I | CTGAAG | 1 cut(s) | 168 |
| Eco88I | CYCGRG | 1 cut(s) | 825 |
| EcoRII | CCWGG | 2 cut(s) | 398, 748 |
| EcoRV | GATATC | 2 cut(s) | 1264, 1349 |
| EcoT22I | ATGCAT | 1 cut(s) | 1302 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 372, 404, 488, 520, 1126, 1158, 1776, 1808 |
| FaqI | GGGAC | 1 cut(s) | 266 |
| FauI | CCCGC | 1 cut(s) | 478 |
| FauNDI | CATATG | 1 cut(s) | 1320 |
| Fnu4HI | GCNGC | 6 cut(s) | 12, 273, 330, 740, 1182, 1662 |
| FokI | GGATG | 5 cut(s) | 701, 741, 880, 1190, 1617 |
| Fsp4HI | GCNGC | 6 cut(s) | 12, 273, 330, 740, 1182, 1662 |
| FspBI | CTAG | 7 cut(s) | 92, 1157, 1254, 1478, 1493, 1604, 1613 |
| GluI | GCNGC | 6 cut(s) | 12, 273, 330, 740, 1182, 1662 |
| GsaI | CCCAGC | 1 cut(s) | 1437 |
| HaeIII | GGCC | 4 cut(s) | 673, 1070, 1258, 1565 |
| HapII | CCGG | 1 cut(s) | 1685 |
| HindIII | AAGCTT | 2 cut(s) | 1442, 1850 |
| HinfI | GANTC | 6 cut(s) | 77, 95, 870, 890, 1190, 1617 |
| HpaII | CCGG | 1 cut(s) | 1685 |
| HphI | GGTGA | 4 cut(s) | 813, 980, 1199, 1237 |
| Hpy166II | GTNNAC | 4 cut(s) | 362, 661, 926, 1139 |
| Hpy188I | TCNGA | 4 cut(s) | 526, 1014, 1037, 1132 |
| Hpy188III | TCNNGA | 6 cut(s) | 377, 867, 907, 1115, 1157, 1381 |
| Hpy8I | GTNNAC | 4 cut(s) | 362, 661, 926, 1139 |
| HpyAV | CCTTC | 5 cut(s) | 33, 758, 1032, 1075, 1830 |
| HpyCH4III | ACNGT | 3 cut(s) | 67, 634, 1768 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 617, 1430 |
| HpyF3I | CTNAG | 3 cut(s) | 474, 845, 1623 |
| Kzo9I | GATC | 9 cut(s) | 501, 914, 952, 1030, 1358, 1609, 1786, 1856, 1873 |
| LmnI | GCTCC | 3 cut(s) | 616, 747, 1309 |
| Lsp1109I | GCAGC | 6 cut(s) | 23, 259, 316, 751, 1193, 1648 |
| LweI | GCATC | 1 cut(s) | 1411 |
| MaeI | CTAG | 7 cut(s) | 92, 1157, 1254, 1478, 1493, 1604, 1613 |
| MaeIII | GTNAC | 8 cut(s) | 423, 462, 1147, 1394, 1495, 1638, 1649, 1724 |
| MalI | GATC | 9 cut(s) | 503, 916, 954, 1032, 1360, 1611, 1788, 1858, 1875 |
| MboI | GATC | 9 cut(s) | 501, 914, 952, 1030, 1358, 1609, 1786, 1856, 1873 |
| MfeI | CAATTG | 1 cut(s) | 534 |
| MflI | RGATCY | 4 cut(s) | 501, 914, 1030, 1358 |
| MlsI | TGGCCA | 1 cut(s) | 1070 |
| MluNI | TGGCCA | 1 cut(s) | 1070 |
| MlyI | GAGTC | 1 cut(s) | 884 |
| MmeI | TCCRAC | 1 cut(s) | 837 |
| Mox20I | TGGCCA | 1 cut(s) | 1070 |
| Mph1103I | ATGCAT | 1 cut(s) | 1302 |
| MscI | TGGCCA | 1 cut(s) | 1070 |
| MseI | TTAA | 6 cut(s) | 812, 987, 1094, 1332, 1583, 1592 |
| MslI | CAYNNNNRTG | 2 cut(s) | 247, 1064 |
| Msp20I | TGGCCA | 1 cut(s) | 1070 |
| MspA1I | CMGCKG | 1 cut(s) | 473 |
| MspI | CCGG | 1 cut(s) | 1685 |
| MspR9I | CCNGG | 2 cut(s) | 400, 750 |
| MunI | CAATTG | 1 cut(s) | 534 |
| Mva1269I | GAATGC | 1 cut(s) | 1183 |
| MvaI | CCWGG | 2 cut(s) | 400, 750 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 617, 1430 |
| NdeI | CATATG | 1 cut(s) | 1320 |
| NdeII | GATC | 9 cut(s) | 501, 914, 952, 1030, 1358, 1609, 1786, 1856, 1873 |
| NmuCI | GTSAC | 6 cut(s) | 462, 1147, 1394, 1495, 1649, 1724 |
| NsiI | ATGCAT | 1 cut(s) | 1302 |
| NspI | RCATGY | 3 cut(s) | 329, 1304, 1523 |
| PaeI | GCATGC | 2 cut(s) | 329, 1304 |
| PaeR7I | CTCGAG | 1 cut(s) | 825 |
| PagI | TCATGA | 1 cut(s) | 1380 |
| PaqCI | CACCTGC | 1 cut(s) | 1175 |
| PceI | AGGCCT | 1 cut(s) | 1258 |
| PciI | ACATGT | 1 cut(s) | 1519 |
| PctI | GAATGC | 1 cut(s) | 1183 |
| PfeI | GAWTC | 5 cut(s) | 77, 95, 870, 1190, 1617 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1222 |
| PkrI | GCNGC | 6 cut(s) | 13, 274, 331, 741, 1183, 1663 |
| PleI | GAGTC | 1 cut(s) | 884 |
| PpsI | GAGTC | 1 cut(s) | 884 |
| PscI | ACATGT | 1 cut(s) | 1519 |
| PshBI | ATTAAT | 1 cut(s) | 987 |
| Psp6I | CCWGG | 2 cut(s) | 398, 748 |
| PspFI | CCCAGC | 1 cut(s) | 1433 |
| PspGI | CCWGG | 2 cut(s) | 398, 748 |
| PspPI | GGNCC | 1 cut(s) | 1701 |
| PspXI | VCTCGAGB | 1 cut(s) | 825 |
| PsuI | RGATCY | 4 cut(s) | 501, 914, 1030, 1358 |
| RsaI | GTAC | 3 cut(s) | 1214, 1474, 1553 |
| RsaNI | GTAC | 3 cut(s) | 1213, 1473, 1552 |
| RseI | CAYNNNNRTG | 2 cut(s) | 247, 1064 |
| SaqAI | TTAA | 6 cut(s) | 812, 987, 1094, 1332, 1583, 1592 |
| SatI | GCNGC | 6 cut(s) | 12, 273, 330, 740, 1182, 1662 |
| Sau3AI | GATC | 9 cut(s) | 501, 914, 952, 1030, 1358, 1609, 1786, 1856, 1873 |
| Sau96I | GGNCC | 1 cut(s) | 1701 |
| SchI | GAGTC | 1 cut(s) | 884 |
| ScrFI | CCNGG | 2 cut(s) | 400, 750 |
| SfaNI | GCATC | 1 cut(s) | 1411 |
| SfcI | CTRYAG | 2 cut(s) | 63, 1362 |
| Sfr274I | CTCGAG | 1 cut(s) | 825 |
| SinI | GGWCC | 1 cut(s) | 1701 |
| SlaI | CTCGAG | 1 cut(s) | 825 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 247, 1064 |
| SmlI | CTYRAG | 4 cut(s) | 825, 995, 1352, 1534 |
| SmoI | CTYRAG | 4 cut(s) | 825, 995, 1352, 1534 |
| SphI | GCATGC | 2 cut(s) | 329, 1304 |
| SseBI | AGGCCT | 1 cut(s) | 1258 |
| SsiI | CCGC | 1 cut(s) | 471 |
| SspMI | CTAG | 7 cut(s) | 92, 1157, 1254, 1478, 1493, 1604, 1613 |
| StuI | AGGCCT | 1 cut(s) | 1258 |
| StyD4I | CCNGG | 2 cut(s) | 398, 748 |
| TaaI | ACNGT | 3 cut(s) | 67, 634, 1768 |
| TaqI | TCGA | 3 cut(s) | 226, 826, 1777 |
| TatI | WGTACW | 2 cut(s) | 1472, 1551 |
| TfiI | GAWTC | 5 cut(s) | 77, 95, 870, 1190, 1617 |
| Tru1I | TTAA | 6 cut(s) | 812, 987, 1094, 1332, 1583, 1592 |
| Tru9I | TTAA | 6 cut(s) | 812, 987, 1094, 1332, 1583, 1592 |
| TscAI | CASTG | 2 cut(s) | 663, 1281 |
| TseFI | GTSAC | 6 cut(s) | 462, 1147, 1394, 1495, 1649, 1724 |
| TseI | GCWGC | 6 cut(s) | 11, 272, 329, 739, 1181, 1661 |
| Tsp45I | GTSAC | 6 cut(s) | 462, 1147, 1394, 1495, 1649, 1724 |
| TspDTI | ATGAA | 5 cut(s) | 17, 144, 641, 1190, 1285 |
| TspRI | CASTG | 2 cut(s) | 663, 1281 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1222 |
| VpaK11BI | GGWCC | 1 cut(s) | 1701 |
| VspI | ATTAAT | 1 cut(s) | 987 |
| XapI | RAATTY | 2 cut(s) | 515, 973 |
| XbaI | TCTAGA | 1 cut(s) | 1156 |
| XceI | RCATGY | 3 cut(s) | 329, 1304, 1523 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1223 |
| XhoI | CTCGAG | 1 cut(s) | 825 |
| XspI | CTAG | 7 cut(s) | 92, 1157, 1254, 1478, 1493, 1604, 1613 |
| Zsp2I | ATGCAT | 1 cut(s) | 1302 |