Reverse transcriptase (RNA-dependent DNA polymerase)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_2 | PF07727 | 74 - 130 | 9.9e-10 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 424 |
| AccB1I | GGYRCC | 1 cut(s) | 424 |
| AciI | CCGC | 1 cut(s) | 170 |
| AcoI | YGGCCR | 1 cut(s) | 47 |
| AcsI | RAATTY | 2 cut(s) | 153, 570 |
| AcuI | CTGAAG | 1 cut(s) | 596 |
| AdeI | CACNNNGTG | 2 cut(s) | 138, 808 |
| AfaI | GTAC | 3 cut(s) | 266, 426, 581 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 602 |
| AflII | CTTAAG | 1 cut(s) | 260 |
| AgsI | TTSAA | 2 cut(s) | 586, 856 |
| AjnI | CCWGG | 2 cut(s) | 287, 595 |
| AluBI | AGCT | 3 cut(s) | 407, 440, 593 |
| AluI | AGCT | 3 cut(s) | 407, 440, 593 |
| Alw21I | GWGCWC | 1 cut(s) | 442 |
| Alw26I | GTCTC | 3 cut(s) | 115, 126, 341 |
| AoxI | GGCC | 1 cut(s) | 47 |
| ApeKI | GCWGC | 1 cut(s) | 32 |
| ApoI | RAATTY | 2 cut(s) | 153, 570 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 93, 125 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 77, 155 |
| Asp718I | GGTACC | 1 cut(s) | 424 |
| AspLEI | GCGC | 1 cut(s) | 465 |
| AsuHPI | GGTGA | 2 cut(s) | 124, 529 |
| BalI | TGGCCA | 1 cut(s) | 49 |
| BanI | GGYRCC | 1 cut(s) | 424 |
| BanII | GRGCYC | 1 cut(s) | 442 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 165, 197 |
| BauI | CACGAG | 1 cut(s) | 136 |
| Bbv12I | GWGCWC | 1 cut(s) | 442 |
| BbvCI | CCTCAGC | 1 cut(s) | 777 |
| BbvI | GCAGC | 1 cut(s) | 19 |
| BciT130I | CCWGG | 2 cut(s) | 289, 597 |
| BciVI | GTATCC | 1 cut(s) | 423 |
| BcoDI | GTCTC | 3 cut(s) | 115, 126, 341 |
| BfaI | CTAG | 4 cut(s) | 36, 224, 486, 771 |
| BfmI | CTRYAG | 1 cut(s) | 213 |
| BfoI | RGCGCY | 1 cut(s) | 466 |
| BfrI | CTTAAG | 1 cut(s) | 260 |
| BfuI | GTATCC | 1 cut(s) | 423 |
| BisI | GCNGC | 1 cut(s) | 33 |
| BlsI | GCNGC | 1 cut(s) | 34 |
| BmcAI | AGTACT | 2 cut(s) | 266, 581 |
| Bme1390I | CCNGG | 2 cut(s) | 289, 597 |
| BmiI | GGNNCC | 1 cut(s) | 426 |
| BmrFI | CCNGG | 2 cut(s) | 289, 597 |
| BmsI | GCATC | 2 cut(s) | 547, 646 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 95, 127 |
| BpmI | CTGGAG | 1 cut(s) | 579 |
| Bpu10I | CCTNAGC | 1 cut(s) | 777 |
| BpuEI | CTTGAG | 1 cut(s) | 656 |
| BsaAI | YACGTR | 1 cut(s) | 842 |
| BsaI | GGTCTC | 1 cut(s) | 126 |
| BsaJI | CCNNGG | 1 cut(s) | 288 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 81, 111 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 602 |
| BseBI | CCWGG | 2 cut(s) | 289, 597 |
| BseDI | CCNNGG | 1 cut(s) | 288 |
| BseGI | GGATG | 1 cut(s) | 562 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 602 |
| BseMII | CTCAG | 5 cut(s) | 211, 222, 399, 768, 818 |
| BseXI | GCAGC | 1 cut(s) | 19 |
| BshFI | GGCC | 1 cut(s) | 49 |
| BshNI | GGYRCC | 1 cut(s) | 424 |
| BsiHKAI | GWGCWC | 1 cut(s) | 442 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 602 |
| BsmAI | GTCTC | 3 cut(s) | 115, 126, 341 |
| BsmI | GAATGC | 1 cut(s) | 79 |
| BsnI | GGCC | 1 cut(s) | 49 |
| Bso31I | GGTCTC | 1 cut(s) | 126 |
| Bsp1286I | GDGCHC | 1 cut(s) | 442 |
| Bsp143I | GATC | 2 cut(s) | 418, 433 |
| BspACI | CCGC | 1 cut(s) | 170 |
| BspANI | GGCC | 1 cut(s) | 49 |
| BspCNI | CTCAG | 5 cut(s) | 210, 223, 400, 769, 819 |
| BspLI | GGNNCC | 1 cut(s) | 426 |
| BspMAI | CTGCAG | 1 cut(s) | 217 |
| BspT107I | GGYRCC | 1 cut(s) | 424 |
| BspTI | CTTAAG | 1 cut(s) | 260 |
| BspTNI | GGTCTC | 1 cut(s) | 126 |
| BssECI | CCNNGG | 1 cut(s) | 288 |
| BssMI | GATC | 2 cut(s) | 418, 433 |
| BssSI | CACGAG | 1 cut(s) | 136 |
| Bst2BI | CACGAG | 1 cut(s) | 136 |
| Bst2UI | CCWGG | 2 cut(s) | 289, 597 |
| Bst4CI | ACNGT | 2 cut(s) | 60, 130 |
| Bst6I | CTCTTC | 2 cut(s) | 96, 734 |
| BstAFI | CTTAAG | 1 cut(s) | 260 |
| BstBAI | YACGTR | 1 cut(s) | 842 |
| BstDEI | CTNAG | 5 cut(s) | 197, 231, 408, 777, 827 |
| BstF5I | GGATG | 1 cut(s) | 562 |
| BstH2I | RGCGCY | 1 cut(s) | 466 |
| BstHHI | GCGC | 1 cut(s) | 465 |
| BstKTI | GATC | 2 cut(s) | 421, 436 |
| BstMAI | GTCTC | 3 cut(s) | 115, 126, 341 |
| BstMBI | GATC | 2 cut(s) | 418, 433 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 665 |
| BstNI | CCWGG | 2 cut(s) | 289, 597 |
| BstNSI | RCATGY | 1 cut(s) | 768 |
| BstSCI | CCNGG | 2 cut(s) | 287, 595 |
| BstSFI | CTRYAG | 1 cut(s) | 213 |
| BstV1I | GCAGC | 1 cut(s) | 19 |
| BsuI | GTATCC | 1 cut(s) | 423 |
| BsuRI | GGCC | 1 cut(s) | 49 |
| BtsCI | GGATG | 1 cut(s) | 562 |
| BtsI | GCAGTG | 1 cut(s) | 513 |
| BtsIMutI | CAGTG | 1 cut(s) | 513 |
| CfoI | GCGC | 1 cut(s) | 465 |
| Csp6I | GTAC | 3 cut(s) | 265, 425, 580 |
| CviAII | CATG | 7 cut(s) | 86, 167, 529, 553, 735, 765, 871 |
| CviQI | GTAC | 3 cut(s) | 265, 425, 580 |
| DdeI | CTNAG | 5 cut(s) | 197, 231, 408, 777, 827 |
| DpnI | GATC | 2 cut(s) | 420, 435 |
| DpnII | GATC | 2 cut(s) | 418, 433 |
| DraI | TTTAAA | 1 cut(s) | 42 |
| DraIII | CACNNNGTG | 2 cut(s) | 138, 808 |
| EaeI | YGGCCR | 1 cut(s) | 47 |
| Eam1104I | CTCTTC | 2 cut(s) | 96, 734 |
| EarI | CTCTTC | 2 cut(s) | 96, 734 |
| Ecl136II | GAGCTC | 1 cut(s) | 440 |
| Eco24I | GRGCYC | 1 cut(s) | 442 |
| Eco31I | GGTCTC | 1 cut(s) | 126 |
| Eco53kI | GAGCTC | 1 cut(s) | 440 |
| Eco57I | CTGAAG | 1 cut(s) | 596 |
| EcoICRI | GAGCTC | 1 cut(s) | 440 |
| EcoRI | GAATTC | 1 cut(s) | 570 |
| EcoRII | CCWGG | 2 cut(s) | 287, 595 |
| EcoT22I | ATGCAT | 1 cut(s) | 534 |
| EcoT38I | GRGCYC | 1 cut(s) | 442 |
| FaeI | CATG | 7 cut(s) | 89, 170, 532, 556, 738, 768, 874 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 254, 286 |
| FatI | CATG | 7 cut(s) | 85, 166, 528, 552, 734, 764, 870 |
| Fnu4HI | GCNGC | 1 cut(s) | 33 |
| FokI | GGATG | 1 cut(s) | 569 |
| FriOI | GRGCYC | 1 cut(s) | 442 |
| Fsp4HI | GCNGC | 1 cut(s) | 33 |
| FspBI | CTAG | 4 cut(s) | 36, 224, 486, 771 |
| GlaI | GCGC | 1 cut(s) | 464 |
| GluI | GCNGC | 1 cut(s) | 33 |
| GsuI | CTGGAG | 1 cut(s) | 579 |
| HaeII | RGCGCY | 1 cut(s) | 466 |
| HaeIII | GGCC | 1 cut(s) | 49 |
| HhaI | GCGC | 1 cut(s) | 465 |
| Hin1II | CATG | 7 cut(s) | 89, 170, 532, 556, 738, 768, 874 |
| Hin6I | GCGC | 1 cut(s) | 463 |
| HinP1I | GCGC | 1 cut(s) | 463 |
| HincII | GTYRAC | 1 cut(s) | 693 |
| HindII | GTYRAC | 1 cut(s) | 693 |
| HinfI | GANTC | 4 cut(s) | 303, 394, 520, 547 |
| HphI | GGTGA | 2 cut(s) | 124, 529 |
| Hpy166II | GTNNAC | 1 cut(s) | 693 |
| Hpy188I | TCNGA | 5 cut(s) | 200, 232, 275, 450, 576 |
| Hpy188III | TCNNGA | 2 cut(s) | 416, 635 |
| Hpy8I | GTNNAC | 1 cut(s) | 693 |
| HpyAV | CCTTC | 5 cut(s) | 92, 167, 238, 293, 594 |
| HpyCH4III | ACNGT | 2 cut(s) | 60, 130 |
| HpyCH4IV | ACGT | 1 cut(s) | 841 |
| HpyCH4V | TGCA | 5 cut(s) | 215, 366, 506, 532, 659 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 665 |
| HpyF3I | CTNAG | 5 cut(s) | 197, 231, 408, 777, 827 |
| HpySE526I | ACGT | 1 cut(s) | 841 |
| Hsp92II | CATG | 7 cut(s) | 89, 170, 532, 556, 738, 768, 874 |
| HspAI | GCGC | 1 cut(s) | 463 |
| KpnI | GGTACC | 1 cut(s) | 428 |
| Kzo9I | GATC | 2 cut(s) | 418, 433 |
| LmnI | GCTCC | 1 cut(s) | 598 |
| Lsp1109I | GCAGC | 1 cut(s) | 19 |
| LweI | GCATC | 2 cut(s) | 547, 646 |
| MaeI | CTAG | 4 cut(s) | 36, 224, 486, 771 |
| MaeII | ACGT | 1 cut(s) | 841 |
| MaeIII | GTNAC | 6 cut(s) | 130, 180, 548, 701, 730, 837 |
| MalI | GATC | 2 cut(s) | 420, 435 |
| MboI | GATC | 2 cut(s) | 418, 433 |
| MboII | GAAGA | 3 cut(s) | 113, 262, 751 |
| MhlI | GDGCHC | 1 cut(s) | 442 |
| MlsI | TGGCCA | 1 cut(s) | 49 |
| MluCI | AATT | 7 cut(s) | 43, 153, 162, 276, 535, 570, 724 |
| MluNI | TGGCCA | 1 cut(s) | 49 |
| MlyI | GAGTC | 2 cut(s) | 529, 556 |
| MmeI | TCCRAC | 2 cut(s) | 79, 339 |
| MnlI | CCTC | 9 cut(s) | 145, 238, 274, 444, 631, 681, 713, 772, 785 |
| Mox20I | TGGCCA | 1 cut(s) | 49 |
| Mph1103I | ATGCAT | 1 cut(s) | 534 |
| MroXI | GAANNNNTTC | 2 cut(s) | 77, 155 |
| MscI | TGGCCA | 1 cut(s) | 49 |
| MseI | TTAA | 3 cut(s) | 41, 69, 261 |
| MslI | CAYNNNNRTG | 1 cut(s) | 555 |
| Msp20I | TGGCCA | 1 cut(s) | 49 |
| MspCI | CTTAAG | 1 cut(s) | 260 |
| MspR9I | CCNGG | 2 cut(s) | 289, 597 |
| Mva1269I | GAATGC | 1 cut(s) | 79 |
| MvaI | CCWGG | 2 cut(s) | 289, 597 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 665 |
| NdeII | GATC | 2 cut(s) | 418, 433 |
| NlaIII | CATG | 7 cut(s) | 89, 170, 532, 556, 738, 768, 874 |
| NlaIV | GGNNCC | 1 cut(s) | 426 |
| NmuCI | GTSAC | 2 cut(s) | 130, 548 |
| NsiI | ATGCAT | 1 cut(s) | 534 |
| NspI | RCATGY | 1 cut(s) | 768 |
| PctI | GAATGC | 1 cut(s) | 79 |
| PdmI | GAANNNNTTC | 2 cut(s) | 77, 155 |
| PfeI | GAWTC | 2 cut(s) | 303, 394 |
| PfoI | TCCNGGA | 1 cut(s) | 595 |
| PkrI | GCNGC | 1 cut(s) | 34 |
| PleI | GAGTC | 2 cut(s) | 528, 555 |
| PpsI | GAGTC | 2 cut(s) | 528, 555 |
| Ppu21I | YACGTR | 1 cut(s) | 842 |
| Psp124BI | GAGCTC | 1 cut(s) | 442 |
| Psp6I | CCWGG | 2 cut(s) | 287, 595 |
| PspGI | CCWGG | 2 cut(s) | 287, 595 |
| PspN4I | GGNNCC | 1 cut(s) | 426 |
| PstI | CTGCAG | 1 cut(s) | 217 |
| RsaI | GTAC | 3 cut(s) | 266, 426, 581 |
| RsaNI | GTAC | 3 cut(s) | 265, 425, 580 |
| RseI | CAYNNNNRTG | 1 cut(s) | 555 |
| SacI | GAGCTC | 1 cut(s) | 442 |
| SaqAI | TTAA | 3 cut(s) | 41, 69, 261 |
| SatI | GCNGC | 1 cut(s) | 33 |
| Sau3AI | GATC | 2 cut(s) | 418, 433 |
| ScaI | AGTACT | 2 cut(s) | 266, 581 |
| SchI | GAGTC | 2 cut(s) | 529, 556 |
| ScrFI | CCNGG | 2 cut(s) | 289, 597 |
| SduI | GDGCHC | 1 cut(s) | 442 |
| SfaNI | GCATC | 2 cut(s) | 547, 646 |
| SfcI | CTRYAG | 1 cut(s) | 213 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 555 |
| SmlI | CTYRAG | 2 cut(s) | 260, 635 |
| SmoI | CTYRAG | 2 cut(s) | 260, 635 |
| Sse9I | AATT | 7 cut(s) | 43, 153, 162, 276, 535, 570, 724 |
| SsiI | CCGC | 1 cut(s) | 170 |
| SspMI | CTAG | 4 cut(s) | 36, 224, 486, 771 |
| SstI | GAGCTC | 1 cut(s) | 442 |
| StyD4I | CCNGG | 2 cut(s) | 287, 595 |
| TaaI | ACNGT | 2 cut(s) | 60, 130 |
| TaiI | ACGT | 1 cut(s) | 844 |
| TaqI | TCGA | 3 cut(s) | 99, 436, 539 |
| TasI | AATT | 7 cut(s) | 43, 153, 162, 276, 535, 570, 724 |
| TatI | WGTACW | 2 cut(s) | 264, 579 |
| TfiI | GAWTC | 2 cut(s) | 303, 394 |
| Tru1I | TTAA | 3 cut(s) | 41, 69, 261 |
| Tru9I | TTAA | 3 cut(s) | 41, 69, 261 |
| TscAI | CASTG | 1 cut(s) | 513 |
| TseFI | GTSAC | 2 cut(s) | 130, 548 |
| TseI | GCWGC | 1 cut(s) | 32 |
| Tsp45I | GTSAC | 2 cut(s) | 130, 548 |
| TspDTI | ATGAA | 5 cut(s) | 17, 74, 155, 257, 517 |
| TspGWI | ACGGA | 1 cut(s) | 819 |
| TspRI | CASTG | 1 cut(s) | 513 |
| Vha464I | CTTAAG | 1 cut(s) | 260 |
| XapI | RAATTY | 2 cut(s) | 153, 570 |
| XceI | RCATGY | 1 cut(s) | 768 |
| XmnI | GAANNNNTTC | 2 cut(s) | 77, 155 |
| XspI | CTAG | 4 cut(s) | 36, 224, 486, 771 |
| ZrmI | AGTACT | 2 cut(s) | 266, 581 |
| Zsp2I | ATGCAT | 1 cut(s) | 534 |