Reverse transcriptase (RNA-dependent DNA polymerase)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_2 | PF07727 | 3 - 104 | 1e-21 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 334 |
| Acc65I | GGTACC | 1 cut(s) | 366 |
| AccB1I | GGYRCC | 1 cut(s) | 366 |
| AccI | GTMKAC | 1 cut(s) | 611 |
| AccIII | TCCGGA | 1 cut(s) | 337 |
| AciI | CCGC | 3 cut(s) | 69, 428, 695 |
| AcsI | RAATTY | 1 cut(s) | 225 |
| AfaI | GTAC | 4 cut(s) | 188, 252, 368, 569 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 524 |
| AflII | CTTAAG | 1 cut(s) | 506 |
| AgsI | TTSAA | 3 cut(s) | 184, 203, 539 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 607 |
| AjnI | CCWGG | 1 cut(s) | 517 |
| AluBI | AGCT | 2 cut(s) | 266, 701 |
| AluI | AGCT | 2 cut(s) | 266, 701 |
| Alw26I | GTCTC | 3 cut(s) | 240, 263, 293 |
| Aor13HI | TCCGGA | 1 cut(s) | 337 |
| ApeKI | GCWGC | 1 cut(s) | 660 |
| ApoI | RAATTY | 1 cut(s) | 225 |
| Asp718I | GGTACC | 1 cut(s) | 366 |
| AspLEI | GCGC | 1 cut(s) | 660 |
| AspS9I | GGNCC | 1 cut(s) | 169 |
| AsuC2I | CCSGG | 1 cut(s) | 274 |
| AsuHPI | GGTGA | 2 cut(s) | 560, 602 |
| AvaII | GGWCC | 1 cut(s) | 169 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 125, 158 |
| BanI | GGYRCC | 1 cut(s) | 366 |
| BbvI | GCAGC | 1 cut(s) | 672 |
| BccI | CCATC | 2 cut(s) | 118, 338 |
| BciT130I | CCWGG | 1 cut(s) | 519 |
| BclI | TGATCA | 1 cut(s) | 28 |
| BcnI | CCSGG | 1 cut(s) | 274 |
| BcoDI | GTCTC | 3 cut(s) | 240, 263, 293 |
| BfaI | CTAG | 3 cut(s) | 377, 408, 684 |
| BfmI | CTRYAG | 1 cut(s) | 134 |
| BfrI | CTTAAG | 1 cut(s) | 506 |
| BfuAI | ACCTGC | 1 cut(s) | 334 |
| BisI | GCNGC | 1 cut(s) | 661 |
| BlsI | GCNGC | 1 cut(s) | 662 |
| BmcAI | AGTACT | 1 cut(s) | 188 |
| Bme1390I | CCNGG | 2 cut(s) | 274, 519 |
| Bme18I | GGWCC | 1 cut(s) | 169 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 607 |
| BmgT120I | GGNCC | 1 cut(s) | 169 |
| BmiI | GGNNCC | 2 cut(s) | 348, 368 |
| BmrFI | CCNGG | 2 cut(s) | 274, 519 |
| BmrI | ACTGGG | 2 cut(s) | 456, 592 |
| BmsI | GCATC | 3 cut(s) | 267, 469, 565 |
| BmuI | ACTGGG | 2 cut(s) | 456, 592 |
| BpuEI | CTTGAG | 1 cut(s) | 275 |
| BpuMI | CCSGG | 1 cut(s) | 274 |
| BsaI | GGTCTC | 1 cut(s) | 263 |
| BsaJI | CCNNGG | 1 cut(s) | 172 |
| BsaWI | WCCGGW | 1 cut(s) | 337 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 524 |
| Bse1I | ACTGG | 2 cut(s) | 462, 587 |
| BseAI | TCCGGA | 1 cut(s) | 337 |
| BseBI | CCWGG | 1 cut(s) | 519 |
| BseDI | CCNNGG | 1 cut(s) | 172 |
| BseGI | GGATG | 4 cut(s) | 115, 282, 484, 580 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 524 |
| BseMII | CTCAG | 3 cut(s) | 258, 488, 693 |
| BseNI | ACTGG | 2 cut(s) | 462, 587 |
| BseXI | GCAGC | 1 cut(s) | 672 |
| BshNI | GGYRCC | 1 cut(s) | 366 |
| BsiSI | CCGG | 2 cut(s) | 273, 338 |
| BslFI | GGGAC | 1 cut(s) | 444 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 524 |
| BsmAI | GTCTC | 3 cut(s) | 240, 263, 293 |
| BsmFI | GGGAC | 1 cut(s) | 444 |
| BsmI | GAATGC | 1 cut(s) | 492 |
| Bso31I | GGTCTC | 1 cut(s) | 263 |
| Bsp13I | TCCGGA | 1 cut(s) | 337 |
| Bsp143I | GATC | 3 cut(s) | 28, 112, 686 |
| BspACI | CCGC | 3 cut(s) | 69, 428, 695 |
| BspCNI | CTCAG | 3 cut(s) | 259, 489, 694 |
| BspEI | TCCGGA | 1 cut(s) | 337 |
| BspLI | GGNNCC | 2 cut(s) | 348, 368 |
| BspMI | ACCTGC | 1 cut(s) | 334 |
| BspQI | GCTCTTC | 1 cut(s) | 462 |
| BspT107I | GGYRCC | 1 cut(s) | 366 |
| BspTI | CTTAAG | 1 cut(s) | 506 |
| BspTNI | GGTCTC | 1 cut(s) | 263 |
| BsrI | ACTGG | 2 cut(s) | 462, 587 |
| BssECI | CCNNGG | 1 cut(s) | 172 |
| BssMI | GATC | 3 cut(s) | 28, 112, 686 |
| BssT1I | CCWWGG | 1 cut(s) | 172 |
| Bst2UI | CCWGG | 1 cut(s) | 519 |
| Bst4CI | ACNGT | 1 cut(s) | 609 |
| Bst6I | CTCTTC | 1 cut(s) | 462 |
| BstAFI | CTTAAG | 1 cut(s) | 506 |
| BstDEI | CTNAG | 3 cut(s) | 267, 497, 702 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 522 |
| BstF5I | GGATG | 4 cut(s) | 115, 282, 484, 580 |
| BstHHI | GCGC | 1 cut(s) | 660 |
| BstKTI | GATC | 3 cut(s) | 31, 115, 689 |
| BstMAI | GTCTC | 3 cut(s) | 240, 263, 293 |
| BstMBI | GATC | 3 cut(s) | 28, 112, 686 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 584 |
| BstNI | CCWGG | 1 cut(s) | 519 |
| BstSCI | CCNGG | 2 cut(s) | 272, 517 |
| BstSFI | CTRYAG | 1 cut(s) | 134 |
| BstV1I | GCAGC | 1 cut(s) | 672 |
| BtsCI | GGATG | 4 cut(s) | 115, 282, 484, 580 |
| BtsI | GCAGTG | 1 cut(s) | 489 |
| BtsIMutI | CAGTG | 2 cut(s) | 469, 489 |
| BveI | ACCTGC | 1 cut(s) | 334 |
| CfoI | GCGC | 1 cut(s) | 660 |
| Cfr13I | GGNCC | 1 cut(s) | 169 |
| CsiI | ACCWGGT | 1 cut(s) | 517 |
| Csp6I | GTAC | 4 cut(s) | 187, 251, 367, 568 |
| CviJI | RGCY | 5 cut(s) | 131, 266, 388, 587, 701 |
| CviKI_1 | RGCY | 5 cut(s) | 131, 266, 388, 587, 701 |
| CviQI | GTAC | 4 cut(s) | 187, 251, 367, 568 |
| DdeI | CTNAG | 3 cut(s) | 267, 497, 702 |
| DpnI | GATC | 3 cut(s) | 30, 114, 688 |
| DpnII | GATC | 3 cut(s) | 28, 112, 686 |
| DraI | TTTAAA | 1 cut(s) | 151 |
| DriI | GACNNNNNGTC | 1 cut(s) | 607 |
| Eam1104I | CTCTTC | 1 cut(s) | 462 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 607 |
| EarI | CTCTTC | 1 cut(s) | 462 |
| Eco130I | CCWWGG | 1 cut(s) | 172 |
| Eco31I | GGTCTC | 1 cut(s) | 263 |
| Eco32I | GATATC | 1 cut(s) | 503 |
| Eco47I | GGWCC | 1 cut(s) | 169 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 522 |
| EcoO109I | RGGNCCY | 1 cut(s) | 169 |
| EcoRII | CCWGG | 1 cut(s) | 517 |
| EcoRV | GATATC | 1 cut(s) | 503 |
| EcoT14I | CCWWGG | 1 cut(s) | 172 |
| EcoT22I | ATGCAT | 1 cut(s) | 456 |
| ErhI | CCWWGG | 1 cut(s) | 172 |
| FaqI | GGGAC | 1 cut(s) | 444 |
| FauNDI | CATATG | 1 cut(s) | 474 |
| FbaI | TGATCA | 1 cut(s) | 28 |
| FblI | GTMKAC | 1 cut(s) | 611 |
| Fnu4HI | GCNGC | 1 cut(s) | 661 |
| FokI | GGATG | 4 cut(s) | 122, 289, 491, 587 |
| Fsp4HI | GCNGC | 1 cut(s) | 661 |
| FspBI | CTAG | 3 cut(s) | 377, 408, 684 |
| GlaI | GCGC | 1 cut(s) | 659 |
| GluI | GCNGC | 1 cut(s) | 661 |
| HapII | CCGG | 2 cut(s) | 273, 338 |
| HhaI | GCGC | 1 cut(s) | 660 |
| Hin6I | GCGC | 1 cut(s) | 658 |
| HinP1I | GCGC | 1 cut(s) | 658 |
| HpaII | CCGG | 2 cut(s) | 273, 338 |
| HphI | GGTGA | 2 cut(s) | 560, 602 |
| Hpy166II | GTNNAC | 2 cut(s) | 570, 612 |
| Hpy188I | TCNGA | 3 cut(s) | 8, 28, 498 |
| Hpy188III | TCNNGA | 2 cut(s) | 310, 338 |
| Hpy8I | GTNNAC | 2 cut(s) | 570, 612 |
| HpyAV | CCTTC | 4 cut(s) | 160, 357, 538, 667 |
| HpyCH4III | ACNGT | 1 cut(s) | 609 |
| HpyCH4IV | ACGT | 1 cut(s) | 241 |
| HpyCH4V | TGCA | 5 cut(s) | 209, 454, 482, 515, 578 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 584 |
| HpyF3I | CTNAG | 3 cut(s) | 267, 497, 702 |
| HpySE526I | ACGT | 1 cut(s) | 241 |
| HspAI | GCGC | 1 cut(s) | 658 |
| Kpn2I | TCCGGA | 1 cut(s) | 337 |
| KpnI | GGTACC | 1 cut(s) | 370 |
| Ksp22I | TGATCA | 1 cut(s) | 28 |
| Kzo9I | GATC | 3 cut(s) | 28, 112, 686 |
| LguI | GCTCTTC | 1 cut(s) | 462 |
| LmnI | GCTCC | 1 cut(s) | 340 |
| Lsp1109I | GCAGC | 1 cut(s) | 672 |
| LweI | GCATC | 3 cut(s) | 267, 469, 565 |
| MabI | ACCWGGT | 1 cut(s) | 517 |
| MaeI | CTAG | 3 cut(s) | 377, 408, 684 |
| MaeII | ACGT | 1 cut(s) | 241 |
| MaeIII | GTNAC | 3 cut(s) | 100, 287, 649 |
| MalI | GATC | 3 cut(s) | 30, 114, 688 |
| MboI | GATC | 3 cut(s) | 28, 112, 686 |
| MboII | GAAGA | 1 cut(s) | 479 |
| MluCI | AATT | 3 cut(s) | 198, 225, 446 |
| MmeI | TCCRAC | 2 cut(s) | 374, 616 |
| MnlI | CCTC | 6 cut(s) | 121, 335, 378, 518, 544, 632 |
| Mph1103I | ATGCAT | 1 cut(s) | 456 |
| MroI | TCCGGA | 1 cut(s) | 337 |
| MseI | TTAA | 2 cut(s) | 150, 507 |
| MslI | CAYNNNNRTG | 1 cut(s) | 477 |
| MspCI | CTTAAG | 1 cut(s) | 506 |
| MspI | CCGG | 2 cut(s) | 273, 338 |
| MspR9I | CCNGG | 2 cut(s) | 274, 519 |
| Mva1269I | GAATGC | 1 cut(s) | 492 |
| MvaI | CCWGG | 1 cut(s) | 519 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 584 |
| NciI | CCSGG | 1 cut(s) | 274 |
| NdeI | CATATG | 1 cut(s) | 474 |
| NdeII | GATC | 3 cut(s) | 28, 112, 686 |
| NlaIV | GGNNCC | 2 cut(s) | 348, 368 |
| NmuCI | GTSAC | 2 cut(s) | 100, 649 |
| NsiI | ATGCAT | 1 cut(s) | 456 |
| PciSI | GCTCTTC | 1 cut(s) | 462 |
| PctI | GAATGC | 1 cut(s) | 492 |
| PkrI | GCNGC | 1 cut(s) | 662 |
| PpuMI | RGGWCCY | 1 cut(s) | 169 |
| Psp5II | RGGWCCY | 1 cut(s) | 169 |
| Psp6I | CCWGG | 1 cut(s) | 517 |
| PspGI | CCWGG | 1 cut(s) | 517 |
| PspN4I | GGNNCC | 2 cut(s) | 348, 368 |
| PspPI | GGNCC | 1 cut(s) | 169 |
| PspPPI | RGGWCCY | 1 cut(s) | 169 |
| RsaI | GTAC | 4 cut(s) | 188, 252, 368, 569 |
| RsaNI | GTAC | 4 cut(s) | 187, 251, 367, 568 |
| RseI | CAYNNNNRTG | 1 cut(s) | 477 |
| SapI | GCTCTTC | 1 cut(s) | 462 |
| SaqAI | TTAA | 2 cut(s) | 150, 507 |
| SatI | GCNGC | 1 cut(s) | 661 |
| Sau3AI | GATC | 3 cut(s) | 28, 112, 686 |
| Sau96I | GGNCC | 1 cut(s) | 169 |
| ScaI | AGTACT | 1 cut(s) | 188 |
| ScrFI | CCNGG | 2 cut(s) | 274, 519 |
| SexAI | ACCWGGT | 1 cut(s) | 517 |
| SfaNI | GCATC | 3 cut(s) | 267, 469, 565 |
| SfcI | CTRYAG | 1 cut(s) | 134 |
| SinI | GGWCC | 1 cut(s) | 169 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 477 |
| SmlI | CTYRAG | 2 cut(s) | 254, 506 |
| SmoI | CTYRAG | 2 cut(s) | 254, 506 |
| Sse9I | AATT | 3 cut(s) | 198, 225, 446 |
| SsiI | CCGC | 3 cut(s) | 69, 428, 695 |
| SspMI | CTAG | 3 cut(s) | 377, 408, 684 |
| StyD4I | CCNGG | 2 cut(s) | 272, 517 |
| StyI | CCWWGG | 1 cut(s) | 172 |
| TaaI | ACNGT | 1 cut(s) | 609 |
| TaiI | ACGT | 1 cut(s) | 244 |
| TaqI | TCGA | 2 cut(s) | 309, 709 |
| TasI | AATT | 3 cut(s) | 198, 225, 446 |
| TatI | WGTACW | 2 cut(s) | 186, 250 |
| Tru1I | TTAA | 2 cut(s) | 150, 507 |
| Tru9I | TTAA | 2 cut(s) | 150, 507 |
| TscAI | CASTG | 2 cut(s) | 469, 489 |
| TseFI | GTSAC | 2 cut(s) | 100, 649 |
| TseI | GCWGC | 1 cut(s) | 660 |
| Tsp45I | GTSAC | 2 cut(s) | 100, 649 |
| TspDTI | ATGAA | 3 cut(s) | 31, 179, 329 |
| TspGWI | ACGGA | 3 cut(s) | 368, 587, 614 |
| TspRI | CASTG | 2 cut(s) | 469, 489 |
| Vha464I | CTTAAG | 1 cut(s) | 506 |
| VpaK11BI | GGWCC | 1 cut(s) | 169 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 522 |
| XapI | RAATTY | 1 cut(s) | 225 |
| XmiI | GTMKAC | 1 cut(s) | 611 |
| XspI | CTAG | 3 cut(s) | 377, 408, 684 |
| ZrmI | AGTACT | 1 cut(s) | 188 |
| Zsp2I | ATGCAT | 1 cut(s) | 456 |