beta-galactosidase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Pol_BBD | PF22936 | 11 - 82 | 6.2e-15 | Pol polyprotein, beta-barrel domain |
| gag_pre-integrs | PF13976 | 117 - 190 | 2.6e-15 | GAG-pre-integrase domain |
| rve | PF00665 | 208 - 304 | 8.9e-11 | Integrase core domain |
| SH3_retrovirus | PF25597 | 382 - 439 | 9.7e-25 | Retroviral polymerase SH3-like domain |
| RVT_2 | PF07727 | 684 - 844 | 4.8e-51 | Reverse transcriptase (RNA-dependent DNA polymerase) |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 222, 2990 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 721 |
| Acc65I | GGTACC | 1 cut(s) | 1768 |
| AccB1I | GGYRCC | 2 cut(s) | 1768, 2575 |
| AccII | CGCG | 1 cut(s) | 1592 |
| AccIII | TCCGGA | 1 cut(s) | 2244 |
| AciI | CCGC | 1 cut(s) | 1997 |
| AclI | AACGTT | 1 cut(s) | 689 |
| AclWI | GGATC | 7 cut(s) | 990, 1184, 1250, 1736, 1751, 1994, 2007 |
| AcoI | YGGCCR | 1 cut(s) | 561 |
| AcuI | CTGAAG | 5 cut(s) | 752, 1331, 1716, 1758, 2444 |
| AcyI | GRCGYC | 1 cut(s) | 2576 |
| AfaI | GTAC | 9 cut(s) | 133, 990, 1045, 1770, 2070, 2342, 2564, 2630, 2684 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 149, 639, 1265, 1350, 1351, 2585, 2776 |
| AflII | CTTAAG | 2 cut(s) | 491, 2374 |
| AflIII | ACRYGT | 1 cut(s) | 1276 |
| AjnI | CCWGG | 4 cut(s) | 2356, 2578, 2826, 3035 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 380, 412, 2015, 2047 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1363, 1395 |
| Alw21I | GWGCWC | 2 cut(s) | 676, 1148 |
| Alw26I | GTCTC | 7 cut(s) | 121, 365, 1285, 1637, 1646, 2204, 2436 |
| Alw44I | GTGCAC | 1 cut(s) | 1144 |
| AlwI | GGATC | 7 cut(s) | 990, 1184, 1250, 1736, 1751, 1994, 2007 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 374, 2762 |
| Ama87I | CYCGRG | 1 cut(s) | 1131 |
| Aor13HI | TCCGGA | 1 cut(s) | 2244 |
| AoxI | GGCC | 4 cut(s) | 561, 847, 2279, 2419 |
| ApaLI | GTGCAC | 1 cut(s) | 1144 |
| ApeKI | GCWGC | 5 cut(s) | 499, 1025, 1179, 2264, 2876 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1572, 1604, 1645, 1677 |
| AseI | ATTAAT | 2 cut(s) | 2145, 2235 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 960, 2040, 2455 |
| Asp718I | GGTACC | 1 cut(s) | 1768 |
| AspA2I | CCTAGG | 1 cut(s) | 1814 |
| AspLEI | GCGC | 2 cut(s) | 2523, 2578 |
| AspS9I | GGNCC | 4 cut(s) | 644, 848, 2280, 2824 |
| AsuC2I | CCSGG | 3 cut(s) | 1132, 1133, 1746 |
| AsuHPI | GGTGA | 6 cut(s) | 139, 563, 579, 1069, 1722, 2663 |
| AvaI | CYCGRG | 1 cut(s) | 1131 |
| AvaII | GGWCC | 2 cut(s) | 644, 2824 |
| AvrII | CCTAGG | 1 cut(s) | 1814 |
| AxyI | CCTNAGG | 1 cut(s) | 1764 |
| BaeGI | GKGCMC | 3 cut(s) | 1148, 1201, 2355 |
| BalI | TGGCCA | 1 cut(s) | 563 |
| BamHI | GGATCC | 1 cut(s) | 1999 |
| BanI | GGYRCC | 2 cut(s) | 1768, 2575 |
| BanII | GRGCYC | 2 cut(s) | 676, 1131 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1774, 1806 |
| BbsI | GAAGAC | 4 cut(s) | 1332, 1419, 1782, 2096 |
| Bbv12I | GWGCWC | 2 cut(s) | 676, 1148 |
| BbvI | GCAGC | 5 cut(s) | 486, 1037, 1191, 2276, 2863 |
| BccI | CCATC | 5 cut(s) | 122, 217, 946, 1112, 2129 |
| BceAI | ACGGC | 1 cut(s) | 447 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1550, 1584 |
| BciT130I | CCWGG | 4 cut(s) | 2358, 2580, 2828, 3037 |
| BciVI | GTATCC | 1 cut(s) | 2474 |
| BclI | TGATCA | 1 cut(s) | 1948 |
| BcnI | CCSGG | 3 cut(s) | 1132, 1133, 1746 |
| BcoDI | GTCTC | 7 cut(s) | 121, 365, 1285, 1637, 1646, 2204, 2436 |
| BfaI | CTAG | 4 cut(s) | 215, 1815, 1974, 2066 |
| BfmI | CTRYAG | 2 cut(s) | 1893, 2094 |
| BfoI | RGCGCY | 1 cut(s) | 2579 |
| BfrI | CTTAAG | 2 cut(s) | 491, 2374 |
| BfuI | GTATCC | 1 cut(s) | 2474 |
| BisI | GCNGC | 5 cut(s) | 500, 1026, 1180, 2265, 2877 |
| BlnI | CCTAGG | 1 cut(s) | 1814 |
| BlsI | GCNGC | 5 cut(s) | 501, 1027, 1181, 2266, 2878 |
| Bme1390I | CCNGG | 7 cut(s) | 1132, 1133, 1746, 2358, 2580, 2828, 3037 |
| Bme18I | GGWCC | 2 cut(s) | 644, 2824 |
| BmeT110I | CYCGRG | 1 cut(s) | 1131 |
| BmgT120I | GGNCC | 4 cut(s) | 644, 848, 2280, 2824 |
| BmiI | GGNNCC | 6 cut(s) | 645, 1128, 1770, 2001, 2577, 2705 |
| BmrFI | CCNGG | 7 cut(s) | 1132, 1133, 1746, 2358, 2580, 2828, 3037 |
| BmsI | GCATC | 7 cut(s) | 59, 400, 466, 1736, 1978, 2530, 2626 |
| BoxI | GACNNNNGTC | 1 cut(s) | 75 |
| BpiI | GAAGAC | 4 cut(s) | 1332, 1419, 1782, 2096 |
| BpmI | CTGGAG | 1 cut(s) | 690 |
| BpuEI | CTTGAG | 1 cut(s) | 90 |
| BpuMI | CCSGG | 3 cut(s) | 1132, 1133, 1746 |
| Bsa29I | ATCGAT | 1 cut(s) | 1246 |
| BsaBI | GATNNNNATC | 2 cut(s) | 2252, 3080 |
| BsaHI | GRCGYC | 1 cut(s) | 2576 |
| BsaJI | CCNNGG | 7 cut(s) | 1130, 1131, 1814, 1836, 2356, 2770, 2827 |
| BsaWI | WCCGGW | 4 cut(s) | 142, 149, 867, 2244 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 124, 154, 825, 855, 999, 1029 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 149, 639, 1265, 1350, 1351, 2585, 2776 |
| Bse118I | RCCGGY | 1 cut(s) | 2077 |
| Bse1I | ACTGG | 5 cut(s) | 379, 564, 1270, 2290, 2900 |
| Bse21I | CCTNAGG | 1 cut(s) | 1764 |
| Bse8I | GATNNNNATC | 2 cut(s) | 2252, 3080 |
| BseAI | TCCGGA | 1 cut(s) | 2244 |
| BseBI | CCWGG | 4 cut(s) | 2358, 2580, 2828, 3037 |
| BseCI | ATCGAT | 1 cut(s) | 1246 |
| BseDI | CCNNGG | 7 cut(s) | 1130, 1131, 1814, 1836, 2356, 2770, 2827 |
| BseGI | GGATG | 5 cut(s) | 1104, 1993, 2105, 2353, 2545 |
| BseJI | GATNNNNATC | 2 cut(s) | 2252, 3080 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 149, 639, 1265, 1350, 1351, 2585, 2776 |
| BseMII | CTCAG | 7 cut(s) | 803, 1335, 1349, 1778, 2754, 3009, 3069 |
| BseNI | ACTGG | 5 cut(s) | 379, 564, 1270, 2290, 2900 |
| BseRI | GAGGAG | 3 cut(s) | 900, 2222, 3014 |
| BseSI | GKGCMC | 3 cut(s) | 1148, 1201, 2355 |
| BseXI | GCAGC | 5 cut(s) | 486, 1037, 1191, 2276, 2863 |
| BsgI | GTGCAG | 2 cut(s) | 2003, 2775 |
| Bsh1236I | CGCG | 1 cut(s) | 1592 |
| BshFI | GGCC | 4 cut(s) | 563, 849, 2281, 2421 |
| BshNI | GGYRCC | 2 cut(s) | 1768, 2575 |
| BshVI | ATCGAT | 1 cut(s) | 1246 |
| BsiHKAI | GWGCWC | 2 cut(s) | 676, 1148 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1131 |
| BsiSI | CCGG | 7 cut(s) | 143, 150, 868, 1132, 1746, 2078, 2245 |
| BslFI | GGGAC | 1 cut(s) | 414 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 149, 639, 1265, 1350, 1351, 2585, 2776 |
| BsmAI | GTCTC | 7 cut(s) | 121, 365, 1285, 1637, 1646, 2204, 2436 |
| BsmBI | CGTCTC | 1 cut(s) | 1637 |
| BsmFI | GGGAC | 1 cut(s) | 414 |
| BsmI | GAATGC | 4 cut(s) | 436, 1573, 2056, 2311 |
| BsnI | GGCC | 4 cut(s) | 563, 849, 2281, 2421 |
| BsoBI | CYCGRG | 1 cut(s) | 1131 |
| Bsp1286I | GDGCHC | 5 cut(s) | 676, 1131, 1148, 1201, 2355 |
| Bsp13I | TCCGGA | 1 cut(s) | 2244 |
| Bsp1407I | TGTACA | 1 cut(s) | 2340 |
| Bsp143I | GATC | 8 cut(s) | 995, 1189, 1255, 1741, 1756, 1948, 1999, 2747 |
| Bsp68I | TCGCGA | 1 cut(s) | 1592 |
| BspACI | CCGC | 1 cut(s) | 1997 |
| BspANI | GGCC | 4 cut(s) | 563, 849, 2281, 2421 |
| BspCNI | CTCAG | 7 cut(s) | 802, 1334, 1348, 1777, 2755, 3008, 3068 |
| BspDI | ATCGAT | 1 cut(s) | 1246 |
| BspEI | TCCGGA | 1 cut(s) | 2244 |
| BspFNI | CGCG | 1 cut(s) | 1592 |
| BspLI | GGNNCC | 6 cut(s) | 645, 1128, 1770, 2001, 2577, 2705 |
| BspPI | GGATC | 7 cut(s) | 990, 1184, 1250, 1736, 1751, 1994, 2007 |
| BspQI | GCTCTTC | 1 cut(s) | 2046 |
| BspT107I | GGYRCC | 2 cut(s) | 1768, 2575 |
| BspTI | CTTAAG | 2 cut(s) | 491, 2374 |
| BsrFI | RCCGGY | 1 cut(s) | 2077 |
| BsrGI | TGTACA | 1 cut(s) | 2340 |
| BsrI | ACTGG | 5 cut(s) | 379, 564, 1270, 2290, 2900 |
| BssAI | RCCGGY | 1 cut(s) | 2077 |
| BssECI | CCNNGG | 7 cut(s) | 1130, 1131, 1814, 1836, 2356, 2770, 2827 |
| BssMI | GATC | 8 cut(s) | 995, 1189, 1255, 1741, 1756, 1948, 1999, 2747 |
| BssNI | GRCGYC | 1 cut(s) | 2576 |
| BssT1I | CCWWGG | 2 cut(s) | 1814, 1836 |
| Bst2UI | CCWGG | 4 cut(s) | 2358, 2580, 2828, 3037 |
| Bst4CI | ACNGT | 9 cut(s) | 545, 575, 1043, 1781, 1963, 2095, 2119, 2595, 2939 |
| Bst6I | CTCTTC | 3 cut(s) | 1644, 2046, 2564 |
| BstACI | GRCGYC | 1 cut(s) | 2576 |
| BstAFI | CTTAAG | 2 cut(s) | 491, 2374 |
| BstAUI | TGTACA | 1 cut(s) | 2340 |
| BstC8I | GCNNGC | 1 cut(s) | 1184 |
| BstEII | GGTNACC | 2 cut(s) | 145, 1831 |
| BstF5I | GGATG | 5 cut(s) | 1104, 1993, 2105, 2353, 2545 |
| BstFNI | CGCG | 1 cut(s) | 1592 |
| BstH2I | RGCGCY | 1 cut(s) | 2579 |
| BstHHI | GCGC | 2 cut(s) | 2523, 2578 |
| BstKTI | GATC | 8 cut(s) | 998, 1192, 1258, 1744, 1759, 1951, 2002, 2750 |
| BstMAI | GTCTC | 7 cut(s) | 121, 365, 1285, 1637, 1646, 2204, 2436 |
| BstMBI | GATC | 8 cut(s) | 995, 1189, 1255, 1741, 1756, 1948, 1999, 2747 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 440, 2225, 2645, 2845 |
| BstNI | CCWGG | 4 cut(s) | 2358, 2580, 2828, 3037 |
| BstNSI | RCATGY | 5 cut(s) | 264, 407, 1280, 1937, 2927 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 75 |
| BstPI | GGTNACC | 2 cut(s) | 145, 1831 |
| BstSCI | CCNGG | 7 cut(s) | 1130, 1131, 1744, 2356, 2578, 2826, 3035 |
| BstSFI | CTRYAG | 2 cut(s) | 1893, 2094 |
| BstSLI | GKGCMC | 3 cut(s) | 1148, 1201, 2355 |
| BstUI | CGCG | 1 cut(s) | 1592 |
| BstV1I | GCAGC | 5 cut(s) | 486, 1037, 1191, 2276, 2863 |
| BstV2I | GAAGAC | 4 cut(s) | 1332, 1419, 1782, 2096 |
| BstX2I | RGATCY | 2 cut(s) | 1741, 1999 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2442 |
| BstYI | RGATCY | 2 cut(s) | 1741, 1999 |
| Bsu15I | ATCGAT | 1 cut(s) | 1246 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1764 |
| BsuI | GTATCC | 1 cut(s) | 2474 |
| BsuRI | GGCC | 4 cut(s) | 563, 849, 2281, 2421 |
| BsuTUI | ATCGAT | 1 cut(s) | 1246 |
| BtgZI | GCGATG | 2 cut(s) | 443, 2033 |
| BtsCI | GGATG | 5 cut(s) | 1104, 1993, 2105, 2353, 2545 |
| BtsIMutI | CAGTG | 1 cut(s) | 541 |
| BtuMI | TCGCGA | 1 cut(s) | 1592 |
| Cac8I | GCNNGC | 1 cut(s) | 1184 |
| CaiI | CAGNNNCTG | 2 cut(s) | 374, 2762 |
| CfoI | GCGC | 2 cut(s) | 2523, 2578 |
| Cfr10I | RCCGGY | 1 cut(s) | 2077 |
| Cfr13I | GGNCC | 4 cut(s) | 644, 848, 2280, 2824 |
| Cfr9I | CCCGGG | 1 cut(s) | 1131 |
| ClaI | ATCGAT | 1 cut(s) | 1246 |
| Csp6I | GTAC | 9 cut(s) | 132, 989, 1044, 1769, 2069, 2341, 2563, 2629, 2683 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2907, 2942 |
| CviQI | GTAC | 9 cut(s) | 132, 989, 1044, 1769, 2069, 2341, 2563, 2629, 2683 |
| DinI | GGCGCC | 1 cut(s) | 2577 |
| DpnI | GATC | 8 cut(s) | 997, 1191, 1257, 1743, 1758, 1950, 2001, 2749 |
| DpnII | GATC | 8 cut(s) | 995, 1189, 1255, 1741, 1756, 1948, 1999, 2747 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 721 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 721 |
| EaeI | YGGCCR | 1 cut(s) | 561 |
| Eam1104I | CTCTTC | 3 cut(s) | 1644, 2046, 2564 |
| EarI | CTCTTC | 3 cut(s) | 1644, 2046, 2564 |
| EciI | GGCGGA | 1 cut(s) | 2012 |
| Ecl136II | GAGCTC | 1 cut(s) | 674 |
| Eco130I | CCWWGG | 2 cut(s) | 1814, 1836 |
| Eco24I | GRGCYC | 2 cut(s) | 676, 1131 |
| Eco32I | GATATC | 2 cut(s) | 1870, 3082 |
| Eco47I | GGWCC | 2 cut(s) | 644, 2824 |
| Eco53kI | GAGCTC | 1 cut(s) | 674 |
| Eco57I | CTGAAG | 5 cut(s) | 752, 1331, 1716, 1758, 2444 |
| Eco81I | CCTNAGG | 1 cut(s) | 1764 |
| Eco88I | CYCGRG | 1 cut(s) | 1131 |
| Eco91I | GGTNACC | 2 cut(s) | 145, 1831 |
| EcoICRI | GAGCTC | 1 cut(s) | 674 |
| EcoO109I | RGGNCCY | 2 cut(s) | 644, 2824 |
| EcoO65I | GGTNACC | 2 cut(s) | 145, 1831 |
| EcoRI | GAATTC | 5 cut(s) | 879, 1534, 1594, 1636, 1842 |
| EcoRII | CCWGG | 4 cut(s) | 2356, 2578, 2826, 3035 |
| EcoRV | GATATC | 2 cut(s) | 1870, 3082 |
| EcoT14I | CCWWGG | 2 cut(s) | 1814, 1836 |
| EcoT22I | ATGCAT | 1 cut(s) | 1993 |
| EcoT38I | GRGCYC | 2 cut(s) | 676, 1131 |
| EgeI | GGCGCC | 1 cut(s) | 2577 |
| EheI | GGCGCC | 1 cut(s) | 2577 |
| ErhI | CCWWGG | 2 cut(s) | 1814, 1836 |
| Esp3I | CGTCTC | 1 cut(s) | 1637 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 1196, 1228, 2357, 2389, 2943, 2975 |
| FaqI | GGGAC | 1 cut(s) | 414 |
| FauNDI | CATATG | 2 cut(s) | 60, 2535 |
| FbaI | TGATCA | 1 cut(s) | 1948 |
| Fnu4HI | GCNGC | 5 cut(s) | 500, 1026, 1180, 2265, 2877 |
| FokI | GGATG | 5 cut(s) | 1091, 2000, 2112, 2360, 2552 |
| FriOI | GRGCYC | 2 cut(s) | 676, 1131 |
| Fsp4HI | GCNGC | 5 cut(s) | 500, 1026, 1180, 2265, 2877 |
| FspBI | CTAG | 4 cut(s) | 215, 1815, 1974, 2066 |
| GlaI | GCGC | 2 cut(s) | 2522, 2577 |
| GluI | GCNGC | 5 cut(s) | 500, 1026, 1180, 2265, 2877 |
| GsuI | CTGGAG | 1 cut(s) | 690 |
| HaeII | RGCGCY | 1 cut(s) | 2579 |
| HaeIII | GGCC | 4 cut(s) | 563, 849, 2281, 2421 |
| HapII | CCGG | 7 cut(s) | 143, 150, 868, 1132, 1746, 2078, 2245 |
| HhaI | GCGC | 2 cut(s) | 2523, 2578 |
| Hin1I | GRCGYC | 1 cut(s) | 2576 |
| Hin6I | GCGC | 2 cut(s) | 2521, 2576 |
| HinP1I | GCGC | 2 cut(s) | 2521, 2576 |
| HincII | GTYRAC | 2 cut(s) | 2935, 3061 |
| HindII | GTYRAC | 2 cut(s) | 2935, 3061 |
| HindIII | AAGCTT | 4 cut(s) | 1085, 1184, 2123, 2837 |
| HpaII | CCGG | 7 cut(s) | 143, 150, 868, 1132, 1746, 2078, 2245 |
| HphI | GGTGA | 6 cut(s) | 139, 563, 579, 1069, 1722, 2663 |
| Hpy166II | GTNNAC | 6 cut(s) | 762, 1146, 2341, 2631, 2935, 3061 |
| Hpy8I | GTNNAC | 6 cut(s) | 762, 1146, 2341, 2631, 2935, 3061 |
| Hpy99I | CGWCG | 1 cut(s) | 318 |
| HpyCH4III | ACNGT | 9 cut(s) | 545, 575, 1043, 1781, 1963, 2095, 2119, 2595, 2939 |
| HpyCH4IV | ACGT | 4 cut(s) | 97, 689, 1980, 2668 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 440, 2225, 2645, 2845 |
| HpySE526I | ACGT | 4 cut(s) | 97, 689, 1980, 2668 |
| Hsp92I | GRCGYC | 1 cut(s) | 2576 |
| HspAI | GCGC | 2 cut(s) | 2521, 2576 |
| KasI | GGCGCC | 1 cut(s) | 2575 |
| Kpn2I | TCCGGA | 1 cut(s) | 2244 |
| KpnI | GGTACC | 1 cut(s) | 1772 |
| Ksp22I | TGATCA | 1 cut(s) | 1948 |
| Kzo9I | GATC | 8 cut(s) | 995, 1189, 1255, 1741, 1756, 1948, 1999, 2747 |
| LguI | GCTCTTC | 1 cut(s) | 2046 |
| LmnI | GCTCC | 5 cut(s) | 671, 1126, 1328, 2062, 3001 |
| Lsp1109I | GCAGC | 5 cut(s) | 486, 1037, 1191, 2276, 2863 |
| LweI | GCATC | 7 cut(s) | 59, 400, 466, 1736, 1978, 2530, 2626 |
| MaeI | CTAG | 4 cut(s) | 215, 1815, 1974, 2066 |
| MaeII | ACGT | 4 cut(s) | 97, 689, 1980, 2668 |
| MalI | GATC | 8 cut(s) | 997, 1191, 1257, 1743, 1758, 1950, 2001, 2749 |
| MboI | GATC | 8 cut(s) | 995, 1189, 1255, 1741, 1756, 1948, 1999, 2747 |
| MfeI | CAATTG | 1 cut(s) | 509 |
| MflI | RGATCY | 2 cut(s) | 1741, 1999 |
| MhlI | GDGCHC | 5 cut(s) | 676, 1131, 1148, 1201, 2355 |
| MlsI | TGGCCA | 1 cut(s) | 563 |
| MluNI | TGGCCA | 1 cut(s) | 563 |
| Mly113I | GGCGCC | 1 cut(s) | 2576 |
| MlyI | GAGTC | 3 cut(s) | 304, 577, 1796 |
| MmeI | TCCRAC | 3 cut(s) | 161, 2062, 2677 |
| Mox20I | TGGCCA | 1 cut(s) | 563 |
| Mph1103I | ATGCAT | 1 cut(s) | 1993 |
| MroI | TCCGGA | 1 cut(s) | 2244 |
| MroXI | GAANNNNTTC | 3 cut(s) | 960, 2040, 2455 |
| MscI | TGGCCA | 1 cut(s) | 563 |
| MslI | CAYNNNNRTG | 5 cut(s) | 633, 710, 809, 2348, 2538 |
| Msp20I | TGGCCA | 1 cut(s) | 563 |
| MspA1I | CMGCKG | 1 cut(s) | 2876 |
| MspCI | CTTAAG | 2 cut(s) | 491, 2374 |
| MspI | CCGG | 7 cut(s) | 143, 150, 868, 1132, 1746, 2078, 2245 |
| MspR9I | CCNGG | 7 cut(s) | 1132, 1133, 1746, 2358, 2580, 2828, 3037 |
| MunI | CAATTG | 1 cut(s) | 509 |
| Mva1269I | GAATGC | 4 cut(s) | 436, 1573, 2056, 2311 |
| MvaI | CCWGG | 4 cut(s) | 2358, 2580, 2828, 3037 |
| MvnI | CGCG | 1 cut(s) | 1592 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 440, 2225, 2645, 2845 |
| NarI | GGCGCC | 1 cut(s) | 2576 |
| NciI | CCSGG | 3 cut(s) | 1132, 1133, 1746 |
| NdeI | CATATG | 2 cut(s) | 60, 2535 |
| NdeII | GATC | 8 cut(s) | 995, 1189, 1255, 1741, 1756, 1948, 1999, 2747 |
| NlaIV | GGNNCC | 6 cut(s) | 645, 1128, 1770, 2001, 2577, 2705 |
| NmuCI | GTSAC | 9 cut(s) | 145, 268, 545, 569, 870, 1468, 1552, 1929, 2710 |
| NruI | TCGCGA | 1 cut(s) | 1592 |
| NsiI | ATGCAT | 1 cut(s) | 1993 |
| NspI | RCATGY | 5 cut(s) | 264, 407, 1280, 1937, 2927 |
| PciI | ACATGT | 1 cut(s) | 1276 |
| PciSI | GCTCTTC | 1 cut(s) | 2046 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1596 |
| PctI | GAATGC | 4 cut(s) | 436, 1573, 2056, 2311 |
| PdmI | GAANNNNTTC | 3 cut(s) | 960, 2040, 2455 |
| PfeI | GAWTC | 9 cut(s) | 191, 319, 625, 1072, 1304, 1372, 1675, 2248, 2806 |
| PflFI | GACNNNGTC | 1 cut(s) | 113 |
| PfoI | TCCNGGA | 1 cut(s) | 3035 |
| PkrI | GCNGC | 5 cut(s) | 501, 1027, 1181, 2266, 2878 |
| PleI | GAGTC | 3 cut(s) | 304, 576, 1795 |
| PluTI | GGCGCC | 1 cut(s) | 2579 |
| PpsI | GAGTC | 3 cut(s) | 304, 576, 1795 |
| PpuMI | RGGWCCY | 2 cut(s) | 644, 2824 |
| PscI | ACATGT | 1 cut(s) | 1276 |
| PshAI | GACNNNNGTC | 1 cut(s) | 75 |
| PshBI | ATTAAT | 2 cut(s) | 2145, 2235 |
| PsiI | TTATAA | 2 cut(s) | 222, 2990 |
| Psp124BI | GAGCTC | 1 cut(s) | 676 |
| Psp1406I | AACGTT | 1 cut(s) | 689 |
| Psp5II | RGGWCCY | 2 cut(s) | 644, 2824 |
| Psp6I | CCWGG | 4 cut(s) | 2356, 2578, 2826, 3035 |
| PspEI | GGTNACC | 2 cut(s) | 145, 1831 |
| PspGI | CCWGG | 4 cut(s) | 2356, 2578, 2826, 3035 |
| PspN4I | GGNNCC | 6 cut(s) | 645, 1128, 1770, 2001, 2577, 2705 |
| PspPI | GGNCC | 4 cut(s) | 644, 848, 2280, 2824 |
| PspPPI | RGGWCCY | 2 cut(s) | 644, 2824 |
| PstNI | CAGNNNCTG | 2 cut(s) | 374, 2762 |
| PsuI | RGATCY | 2 cut(s) | 1741, 1999 |
| PsyI | GACNNNGTC | 1 cut(s) | 113 |
| PvuII | CAGCTG | 1 cut(s) | 2876 |
| RruI | TCGCGA | 1 cut(s) | 1592 |
| RsaI | GTAC | 9 cut(s) | 133, 990, 1045, 1770, 2070, 2342, 2564, 2630, 2684 |
| RsaNI | GTAC | 9 cut(s) | 132, 989, 1044, 1769, 2069, 2341, 2563, 2629, 2683 |
| RseI | CAYNNNNRTG | 5 cut(s) | 633, 710, 809, 2348, 2538 |
| SacI | GAGCTC | 1 cut(s) | 676 |
| SapI | GCTCTTC | 1 cut(s) | 2046 |
| SatI | GCNGC | 5 cut(s) | 500, 1026, 1180, 2265, 2877 |
| Sau3AI | GATC | 8 cut(s) | 995, 1189, 1255, 1741, 1756, 1948, 1999, 2747 |
| Sau96I | GGNCC | 4 cut(s) | 644, 848, 2280, 2824 |
| SchI | GAGTC | 3 cut(s) | 304, 577, 1796 |
| ScrFI | CCNGG | 7 cut(s) | 1132, 1133, 1746, 2358, 2580, 2828, 3037 |
| SduI | GDGCHC | 5 cut(s) | 676, 1131, 1148, 1201, 2355 |
| SfaNI | GCATC | 7 cut(s) | 59, 400, 466, 1736, 1978, 2530, 2626 |
| SfcI | CTRYAG | 2 cut(s) | 1893, 2094 |
| SfoI | GGCGCC | 1 cut(s) | 2577 |
| SinI | GGWCC | 2 cut(s) | 644, 2824 |
| SmaI | CCCGGG | 1 cut(s) | 1133 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 633, 710, 809, 2348, 2538 |
| SmlI | CTYRAG | 3 cut(s) | 105, 491, 2374 |
| SmoI | CTYRAG | 3 cut(s) | 105, 491, 2374 |
| SsiI | CCGC | 1 cut(s) | 1997 |
| SspDI | GGCGCC | 1 cut(s) | 2575 |
| SspMI | CTAG | 4 cut(s) | 215, 1815, 1974, 2066 |
| SstI | GAGCTC | 1 cut(s) | 676 |
| StyD4I | CCNGG | 7 cut(s) | 1130, 1131, 1744, 2356, 2578, 2826, 3035 |
| StyI | CCWWGG | 2 cut(s) | 1814, 1836 |
| TaaI | ACNGT | 9 cut(s) | 545, 575, 1043, 1781, 1963, 2095, 2119, 2595, 2939 |
| TaiI | ACGT | 4 cut(s) | 100, 692, 1983, 2671 |
| TaqI | TCGA | 4 cut(s) | 313, 994, 1246, 1809 |
| TatI | WGTACW | 1 cut(s) | 2340 |
| TfiI | GAWTC | 9 cut(s) | 191, 319, 625, 1072, 1304, 1372, 1675, 2248, 2806 |
| TscAI | CASTG | 1 cut(s) | 548 |
| TseFI | GTSAC | 9 cut(s) | 145, 268, 545, 569, 870, 1468, 1552, 1929, 2710 |
| TseI | GCWGC | 5 cut(s) | 499, 1025, 1179, 2264, 2876 |
| Tsp45I | GTSAC | 9 cut(s) | 145, 268, 545, 569, 870, 1468, 1552, 1929, 2710 |
| TspGWI | ACGGA | 5 cut(s) | 270, 331, 949, 1661, 2675 |
| TspMI | CCCGGG | 1 cut(s) | 1131 |
| TspRI | CASTG | 1 cut(s) | 548 |
| Tth111I | GACNNNGTC | 1 cut(s) | 113 |
| Vha464I | CTTAAG | 2 cut(s) | 491, 2374 |
| VneI | GTGCAC | 1 cut(s) | 1144 |
| VpaK11BI | GGWCC | 2 cut(s) | 644, 2824 |
| VspI | ATTAAT | 2 cut(s) | 2145, 2235 |
| XceI | RCATGY | 5 cut(s) | 264, 407, 1280, 1937, 2927 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1922 |
| XmaI | CCCGGG | 1 cut(s) | 1131 |
| XmaJI | CCTAGG | 1 cut(s) | 1814 |
| XmnI | GAANNNNTTC | 3 cut(s) | 960, 2040, 2455 |
| XspI | CTAG | 4 cut(s) | 215, 1815, 1974, 2066 |
| Zsp2I | ATGCAT | 1 cut(s) | 1993 |