FvH4_3g00831

Reverse transcriptase (RNA-dependent DNA polymerase)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000071
Physical Location & Seq
Reverse (-)
422799 .. 425230
2432 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g00831.t1

Sequence Viewer

Length: 1512 bp
ATGCGACTAGAGATTGAAGCCTTGCAGTCCAACAAAACCTGGAGTTTGGTGGCTCCTCCGGCACACAAACGACCCATTGGATGTAAGTGGGTGTACAAGATCAAGCTCAATCTAGATGGCACTATTGAGCGTTACAAAGCACGCTTAGTGGCCAAGGGATATAGCCAAATTGAGGGACTTGATTACAGAGAGACGTTCGCTCCTGTTGCCAAACTCACAACAGTCCGTGTCTTATTAAGCTTGGCTGCACAGCAAAATTGGCATCTCCATCAGTTAGACGTCAACAATGCCTTCCTCAATGGTGATCTTCATGAGGATGTTTATATGCAATTGCCACCCGGATTCGAACGAAAGGGGGAGCAACATGTTGTCTGTAAGTTACATAAATCGTTATATGGCCTAAAACAAGCCTCCAGGCAATGGTTTTTGAAGCTATCGGCCGCTCTCAAGGCAGCCGGATTCCGAAAATCATGGTCCGACTATTCTTTGTTCGTTCGAAATCATCATGGCACCTTCACTGCTCTTTTAGTCTACGTGGATGATGTGATTCTCGCCGGGAATAGCTTAGATGACATCACAAGAACTAAAGCCTTCTTGTCAAGCCGATTCAAGTTGAAGGATATGGGAAAATTAAAGTATTTTCTTGGATTAGAGGTGGCACGGTCAAAACAAGGTATTGCATTAAGCCAGCGTAAATACGCACTTGAAATTTTGGAGGATGCAGGATTTTTGGGAGCCAAGCCTTCACGGTTCCCTGTTGAGCAGAATATATGTCTTACGCAAAGTGATGGAAAATTGCTGCATGATGCGTCAAGATACAGAAGACTAGTTGGGCGCCTCATCTACCTTACCATCACAAGGCCTGACCTTGTATATGCAGTACATATTCTTAGTCAGTTTATGGACAAACCGAGAGAGCCTCACTTGGAGGCAGCTTATCAGGTATTGAGATACTTGAAACAGACTCCAGGACAATGTATCCTCCTACCTTCTAGTGGATCTTTAGAGCTAACGGCATATTGTGATGCGGATTGGGCAAGGTGTAAGGATACGAGAAGATCAACTACGGGATATTGTATCTTTCTTGGAAATGCTCCAATTTCATGGAAGACAAAGAAACAAAGCACGGTCTCTCGTTCAAGTGCTGAGGCTGAGTATCGCTCCATGGCAACAACTTGCTGTGAGGTAACATGGTTGTTATATATTTTACGTGATTTGAATGTTAGACAAGTACGACCAGTGAATTTATATTGTGATAACAAGGCGGCAATTCACATAGCTTCTAATCCTGTGTTTCATGAGAGAACAAAGCATATCGAGATTGATTGTCATGTGGTGAGGGAAAAAGTGCAAAGGGGAATGATAAAGACACAGTATGTTAAGACGCAGGAACAGCCGGCAGACATCTTCACGAAGCCTCTGAGCTCGAATCAATTTGCAATGTTGTTAAGCAAGTTGGGAGTGATCAATATCCACTCCAACTTGAGGGGGAGTGTTAAGAATAAGGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2

Protein Analysis

504

Amino Acids

57.36

Weight (kDa)

9.6

Isoelectric Point (pI)

43.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_2 PF07727 11 - 254 2.1e-74 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000071)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G23160 AT4G23160
fragaria_vesca FvH4_2g08111 FvH4_2g17332 FvH4_2g18071 FvH4_2g20531 FvH4_2g20842 FvH4_2g20842 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g24231 FvH4_2g24232 FvH4_3g00831 FvH4_3g00831 FvH4_3g03561 FvH4_3g03561 FvH4_3g10282 FvH4_3g18165 FvH4_3g19021 FvH4_3g24071 FvH4_3g33123 FvH4_3g33970 FvH4_3g38851 FvH4_3g39133 FvH4_3g39271 FvH4_4g00981 FvH4_4g08191 FvH4_4g08311 FvH4_4g08311 FvH4_4g08311 FvH4_4g09341 FvH4_4g12550 FvH4_4g12550 FvH4_4g12550 FvH4_4g13391 FvH4_4g14842 FvH4_4g27901 FvH4_5g11561 FvH4_5g15611 FvH4_5g17991 FvH4_5g27871 FvH4_5g29995 FvH4_5g39662 FvH4_6g02392 FvH4_6g12781 FvH4_6g20106 FvH4_6g20106 FvH4_6g20106 FvH4_6g30872 FvH4_6g34901 FvH4_6g35632 FvH4_6g36661 FvH4_6g43795 FvH4_6g44611 FvH4_7g01791 FvH4_7g04041 FvH4_7g12551 FvH4_7g23351
malus_domestica MD00G1134200.v1.1 MD01G1096500.v1.1 MD01G1128200.v1.1 MD02G1250500.v1.1 MD02G1294900.v1.1 MD03G1121800.v1.1 MD04G1021400.v1.1 MD04G1051100.v1.1 MD04G1051300.v1.1 MD04G1099000.v1.1 MD05G1047900.v1.1 MD05G1298000.v1.1 MD06G1064200.v1.1 MD06G1120600.v1.1 MD07G1013900.v1.1 MD09G1226900.v1.1 MD10G1196700.v1.1 MD10G1307000.v1.1 MD10G1338900.v1.1 MD11G1107300.v1.1 MD11G1138300.v1.1 MD11G1236700.v1.1 MD12G1032500.v1.1 MD12G1150100.v1.1 MD12G1247800.v1.1 MD17G1267900.v1.1
pyrus_communis pycom02g03660 pycom02g13370 pycom02g14840 pycom02g18400 pycom02g18880 pycom02g22740 pycom04g08800 pycom04g15770 pycom05g07980 pycom05g19640 pycom06g09360 pycom07g13160 pycom08g11820 pycom08g21740 pycom09g19980 pycom10g04810 pycom10g05420 pycom10g14650 pycom11g03140 pycom11g21550 pycom12g14740 pycom13g01600 pycom13g29510 pycom14g07060 pycom15g01990 pycom15g19850 pycom15g30860 pycom16g15290 pycom16g16250 pycom16g25390 pycom17g17270 pycom520g00070
rosa_chinensis RchiOBHm_Chr1g0316691 RchiOBHm_Chr1g0320751 RchiOBHm_Chr1g0320771 RchiOBHm_Chr1g0322231 RchiOBHm_Chr1g0322861 RchiOBHm_Chr1g0328471 RchiOBHm_Chr1g0333321 RchiOBHm_Chr1g0337871 RchiOBHm_Chr1g0339051 RchiOBHm_Chr1g0349861 RchiOBHm_Chr1g0361951 RchiOBHm_Chr1g0365931 RchiOBHm_Chr1g0365981 RchiOBHm_Chr1g0377711 RchiOBHm_Chr1g0381581 RchiOBHm_Chr1g0382741 RchiOBHm_Chr1g0383501 RchiOBHm_Chr2g0101201 RchiOBHm_Chr2g0113601 RchiOBHm_Chr2g0124031 RchiOBHm_Chr2g0135481 RchiOBHm_Chr2g0148361 RchiOBHm_Chr2g0150101 RchiOBHm_Chr2g0154181 RchiOBHm_Chr2g0156071 RchiOBHm_Chr2g0166521 RchiOBHm_Chr2g0166821 RchiOBHm_Chr3g0448011 RchiOBHm_Chr3g0450941 RchiOBHm_Chr3g0450961 RchiOBHm_Chr3g0451051 RchiOBHm_Chr3g0451721 RchiOBHm_Chr3g0453371 RchiOBHm_Chr3g0454881 RchiOBHm_Chr3g0457421 RchiOBHm_Chr3g0457661 RchiOBHm_Chr3g0460011 RchiOBHm_Chr3g0461531 RchiOBHm_Chr3g0461981 RchiOBHm_Chr3g0463471 RchiOBHm_Chr3g0466641 RchiOBHm_Chr3g0468181 RchiOBHm_Chr3g0483351 RchiOBHm_Chr4g0394001 RchiOBHm_Chr4g0397261 RchiOBHm_Chr4g0404531 RchiOBHm_Chr4g0410841 RchiOBHm_Chr4g0415501 RchiOBHm_Chr4g0425221 RchiOBHm_Chr4g0430811 RchiOBHm_Chr5g0010831 RchiOBHm_Chr5g0016831 RchiOBHm_Chr5g0016851 RchiOBHm_Chr5g0031351 RchiOBHm_Chr5g0032151 RchiOBHm_Chr5g0041201 RchiOBHm_Chr5g0042191 RchiOBHm_Chr5g0064121 RchiOBHm_Chr5g0066601 RchiOBHm_Chr5g0078371 RchiOBHm_Chr5g0079271 RchiOBHm_Chr6g0263751 RchiOBHm_Chr6g0285111 RchiOBHm_Chr6g0298961 RchiOBHm_Chr6g0300481 RchiOBHm_Chr6g0303211 RchiOBHm_Chr7g0192341 RchiOBHm_Chr7g0196171 RchiOBHm_Chr7g0200281 RchiOBHm_Chr7g0200551 RchiOBHm_Chr7g0207611 RchiOBHm_Chr7g0212421 RchiOBHm_Chr7g0214991 RchiOBHm_Chr7g0219211 RchiOBHm_Chr7g0242371
rosa_laevigata RLG00000002389 RLG00000007980
rosa_roxburghii Rroxscaffold_1G00053480 Rroxscaffold_2G00090890 Rroxscaffold_2G00099660 Rroxscaffold_2G00134510 Rroxscaffold_3G00221450 Rroxscaffold_3G00240550 Rroxscaffold_4G00305710 Rroxscaffold_4G00306360 Rroxscaffold_4G00306800 Rroxscaffold_4G00329090 Rroxscaffold_5G00382750 Rroxscaffold_5G00385900 Rroxscaffold_6G00403080 Rroxscaffold_7G00172890 Rroxscaffold_7G00186690
rosa_samantha Rh1DG425600
rosa_wichuraiana Rw0G001640 Rw0G009160 Rw0G010480 Rw0G010520 Rw0G013850 Rw0G017170 Rw0G018520 Rw0G019280 Rw0G022780 Rw1G000360 Rw1G001410 Rw1G001630 Rw1G002100 Rw1G006810 Rw1G010680 Rw1G012700 Rw1G016160 Rw1G022180 Rw1G023580 Rw1G025640 Rw1G026310 Rw1G027230 Rw1G028110 Rw1G034180 Rw2G004990 Rw2G005840 Rw2G007350 Rw2G024730 Rw2G025580 Rw2G026670 Rw2G027210 Rw2G029060 Rw2G031560 Rw2G042190 Rw2G043850 Rw2G045990 Rw2G046130 Rw2G049290 Rw2G049310 Rw2G049790 Rw2G052250 Rw3G004350 Rw3G013100 Rw3G015280 Rw3G015720 Rw3G024630 Rw3G026470 Rw3G027840 Rw3G028960 Rw3G029130 Rw3G029160 Rw4G000280 Rw4G006650 Rw4G008970 Rw4G009310 Rw4G011730 Rw4G012000 Rw4G012610 Rw4G014300 Rw4G014690 Rw4G015190 Rw4G016470 Rw4G020750 Rw4G025060 Rw4G025080 Rw5G005610 Rw5G010380 Rw5G013970 Rw5G015130 Rw5G015250 Rw5G017640 Rw5G019910 Rw5G022410 Rw5G023550 Rw5G029710 Rw5G037650 Rw5G038280 Rw5G038570 Rw5G041550 Rw5G042600 Rw5G043910 Rw5G047850 Rw5G048200 Rw5G049920 Rw6G000260 Rw6G000530 Rw6G001710 Rw6G005090 Rw6G006730 Rw6G009310 Rw6G010950 Rw6G011630 Rw6G012080 Rw6G012750 Rw6G015970 Rw6G020700 Rw6G024350 Rw7G008540 Rw7G016620 Rw7G019400 Rw7G020010 Rw7G024240 Rw7G025630 Rw7G027550 Rw7G027770 Rw7G027960 Rw7G028450 Rw7G031280 Rw7G031970 Rw7G032180 Rw7G033590 Rw7G033720 Rw7G033890 Rw7G041800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 282
AccB1I GGYRCC 2 cut(s) 509, 834
AccB7I CCANNNNNTGG 1 cut(s) 420
AccBSI CCGCTC 1 cut(s) 443
AccI GTMKAC 1 cut(s) 531
AciI CCGC 3 cut(s) 441, 1028, 1265
AclWI GGATC 1 cut(s) 1006
AcoI YGGCCR 2 cut(s) 150, 438
AcsI RAATTY 2 cut(s) 708, 1243
AcyI GRCGYC 2 cut(s) 279, 835
AfaI GTAC 3 cut(s) 95, 882, 1233
AfiI CCNNNNNNNGG 5 cut(s) 172, 420, 858, 995, 1485
AflIII ACRYGT 1 cut(s) 364
AgsI TTSAA 8 cut(s) 17, 430, 610, 616, 707, 958, 1140, 1219
AhlI ACTAGT 1 cut(s) 826
AjnI CCWGG 3 cut(s) 38, 413, 967
AluBI AGCT 8 cut(s) 106, 240, 433, 564, 935, 1009, 1280, 1425
AluI AGCT 8 cut(s) 106, 240, 433, 564, 935, 1009, 1280, 1425
Alw21I GWGCWC 1 cut(s) 1427
Alw26I GTCTC 2 cut(s) 185, 1135
AlwI GGATC 1 cut(s) 1006
AoxI GGCC 4 cut(s) 150, 397, 438, 860
ApeKI GCWGC 4 cut(s) 245, 452, 799, 932
ApoI RAATTY 2 cut(s) 708, 1243
AspLEI GCGC 1 cut(s) 837
AspS9I GGNCC 1 cut(s) 474
AsuC2I CCSGG 2 cut(s) 339, 556
AsuHPI GGTGA 2 cut(s) 314, 1348
AsuII TTCGAA 2 cut(s) 345, 496
AvaII GGWCC 1 cut(s) 474
BalI TGGCCA 1 cut(s) 152
BanI GGYRCC 2 cut(s) 509, 834
BanII GRGCYC 1 cut(s) 1427
BarI GAAGNNNNNNTAC 2 cut(s) 1048, 1080
BbsI GAAGAC 2 cut(s) 829, 1115
Bbv12I GWGCWC 1 cut(s) 1427
BbvCI CCTCAGC 1 cut(s) 1146
BbvI GCAGC 4 cut(s) 232, 464, 786, 944
BccI CCATC 4 cut(s) 110, 276, 782, 860
BceAI ACGGC 1 cut(s) 1029
BciT130I CCWGG 3 cut(s) 40, 415, 969
BciVI GTATCC 2 cut(s) 989, 1042
BclI TGATCA 1 cut(s) 1464
BcnI CCSGG 2 cut(s) 339, 556
BcoDI GTCTC 2 cut(s) 185, 1135
BcuI ACTAGT 1 cut(s) 826
BfaI CTAG 5 cut(s) 8, 113, 827, 993, 1510
BfoI RGCGCY 1 cut(s) 838
BfuI GTATCC 2 cut(s) 989, 1042
BisI GCNGC 6 cut(s) 246, 441, 453, 800, 933, 1266
BlsI GCNGC 6 cut(s) 247, 442, 454, 801, 934, 1267
Bme1390I CCNGG 5 cut(s) 40, 339, 415, 556, 969
Bme18I GGWCC 1 cut(s) 474
BmgT120I GGNCC 1 cut(s) 474
BmiI GGNNCC 5 cut(s) 54, 511, 736, 752, 836
BmrFI CCNGG 5 cut(s) 40, 339, 415, 556, 969
BmsI GCATC 4 cut(s) 271, 709, 796, 1015
BpiI GAAGAC 2 cut(s) 829, 1115
BplI GAGNNNNNCTC 4 cut(s) 904, 936, 1145, 1177
BpmI CTGGAG 3 cut(s) 61, 397, 951
Bpu10I CCTNAGC 1 cut(s) 1146
Bpu14I TTCGAA 2 cut(s) 345, 496
BpuEI CTTGAG 2 cut(s) 431, 1504
BpuMI CCSGG 2 cut(s) 339, 556
BsaAI YACGTR 2 cut(s) 535, 1211
BsaBI GATNNNNATC 1 cut(s) 1469
BsaHI GRCGYC 2 cut(s) 279, 835
BsaI GGTCTC 1 cut(s) 1135
BsaJI CCNNGG 2 cut(s) 153, 1164
BsaXI ACNNNNNCTCC 2 cut(s) 184, 214
Bsc4I CCNNNNNNNGG 5 cut(s) 172, 420, 858, 995, 1485
Bse118I RCCGGY 1 cut(s) 1396
Bse1I ACTGG 1 cut(s) 1238
Bse3DI GCAATG 2 cut(s) 425, 1446
Bse8I GATNNNNATC 1 cut(s) 1469
BseBI CCWGG 3 cut(s) 40, 415, 969
BseDI CCNNGG 2 cut(s) 153, 1164
BseGI GGATG 4 cut(s) 86, 322, 544, 724
BseJI GATNNNNATC 1 cut(s) 1469
BseLI CCNNNNNNNGG 5 cut(s) 172, 420, 858, 995, 1485
BseMI GCAATG 2 cut(s) 425, 1446
BseMII CTCAG 3 cut(s) 1137, 1143, 1412
BseNI ACTGG 1 cut(s) 1238
BseRI GAGGAG 1 cut(s) 45
BseX3I CGGCCG 1 cut(s) 438
BseXI GCAGC 4 cut(s) 232, 464, 786, 944
BsgI GTGCAG 1 cut(s) 231
Bsh1285I CGRYCG 1 cut(s) 441
BshFI GGCC 4 cut(s) 152, 399, 440, 862
BshNI GGYRCC 2 cut(s) 509, 834
BsiEI CGRYCG 1 cut(s) 441
BsiHKAI GWGCWC 1 cut(s) 1427
BsiSI CCGG 5 cut(s) 59, 339, 456, 555, 1397
BslFI GGGAC 1 cut(s) 189
BslI CCNNNNNNNGG 5 cut(s) 172, 420, 858, 995, 1485
BsmAI GTCTC 2 cut(s) 185, 1135
BsmBI CGTCTC 1 cut(s) 185
BsmFI GGGAC 1 cut(s) 189
BsnI GGCC 4 cut(s) 152, 399, 440, 862
Bso31I GGTCTC 1 cut(s) 1135
Bsp119I TTCGAA 2 cut(s) 345, 496
Bsp1286I GDGCHC 1 cut(s) 1427
Bsp1407I TGTACA 1 cut(s) 93
Bsp143I GATC 5 cut(s) 99, 304, 998, 1058, 1464
Bsp19I CCATGG 1 cut(s) 1164
BspACI CCGC 3 cut(s) 441, 1028, 1265
BspANI GGCC 4 cut(s) 152, 399, 440, 862
BspCNI CTCAG 3 cut(s) 1138, 1144, 1413
BspHI TCATGA 2 cut(s) 310, 1297
BspLI GGNNCC 5 cut(s) 54, 511, 736, 752, 836
BspPI GGATC 1 cut(s) 1006
BspT104I TTCGAA 2 cut(s) 345, 496
BspT107I GGYRCC 2 cut(s) 509, 834
BspTNI GGTCTC 1 cut(s) 1135
BsrBI CCGCTC 1 cut(s) 443
BsrDI GCAATG 2 cut(s) 425, 1446
BsrFI RCCGGY 1 cut(s) 1396
BsrGI TGTACA 1 cut(s) 93
BsrI ACTGG 1 cut(s) 1238
BssAI RCCGGY 1 cut(s) 1396
BssECI CCNNGG 2 cut(s) 153, 1164
BssMI GATC 5 cut(s) 99, 304, 998, 1058, 1464
BssNI GRCGYC 2 cut(s) 279, 835
BssT1I CCWWGG 2 cut(s) 153, 1164
Bst2UI CCWGG 3 cut(s) 40, 415, 969
Bst4CI ACNGT 5 cut(s) 223, 663, 750, 1129, 1374
BstACI GRCGYC 2 cut(s) 279, 835
BstAUI TGTACA 1 cut(s) 93
BstBAI YACGTR 2 cut(s) 535, 1211
BstBI TTCGAA 2 cut(s) 345, 496
BstC8I GCNNGC 3 cut(s) 142, 689, 1398
BstDEI CTNAG 6 cut(s) 145, 565, 890, 1146, 1152, 1421
BstDSI CCRYGG 1 cut(s) 1164
BstF5I GGATG 4 cut(s) 86, 322, 544, 724
BstH2I RGCGCY 1 cut(s) 838
BstHHI GCGC 1 cut(s) 837
BstKTI GATC 5 cut(s) 102, 307, 1001, 1061, 1467
BstMAI GTCTC 2 cut(s) 185, 1135
BstMBI GATC 5 cut(s) 99, 304, 998, 1058, 1464
BstMCI CGRYCG 1 cut(s) 441
BstMWI GCNNNNNNNGC 6 cut(s) 59, 206, 259, 449, 1034, 1393
BstNI CCWGG 3 cut(s) 40, 415, 969
BstNSI RCATGY 1 cut(s) 368
BstSCI CCNGG 5 cut(s) 38, 337, 413, 554, 967
BstV1I GCAGC 4 cut(s) 232, 464, 786, 944
BstV2I GAAGAC 2 cut(s) 829, 1115
BstX2I RGATCY 1 cut(s) 998
BstXI CCANNNNNNTGG 1 cut(s) 1104
BstYI RGATCY 1 cut(s) 998
BstZI CGGCCG 1 cut(s) 438
BsuI GTATCC 2 cut(s) 989, 1042
BsuRI GGCC 4 cut(s) 152, 399, 440, 862
BtgI CCRYGG 1 cut(s) 1164
BtsCI GGATG 4 cut(s) 86, 322, 544, 724
BtsI GCAGTG 1 cut(s) 516
BtsIMutI CAGTG 2 cut(s) 516, 1245
Cac8I GCNNGC 3 cut(s) 142, 689, 1398
CciI TCATGA 2 cut(s) 310, 1297
CfoI GCGC 1 cut(s) 837
Cfr10I RCCGGY 1 cut(s) 1396
Cfr13I GGNCC 1 cut(s) 474
CseI GACGC 2 cut(s) 798, 1393
Csp6I GTAC 3 cut(s) 94, 881, 1232
CviQI GTAC 3 cut(s) 94, 881, 1232
DdeI CTNAG 6 cut(s) 145, 565, 890, 1146, 1152, 1421
DinI GGCGCC 1 cut(s) 836
DpnI GATC 5 cut(s) 101, 306, 1000, 1060, 1466
DpnII GATC 5 cut(s) 99, 304, 998, 1058, 1464
EaeI YGGCCR 2 cut(s) 150, 438
EagI CGGCCG 1 cut(s) 438
Ecl136II GAGCTC 1 cut(s) 1425
EclXI CGGCCG 1 cut(s) 438
Eco130I CCWWGG 2 cut(s) 153, 1164
Eco147I AGGCCT 1 cut(s) 862
Eco24I GRGCYC 1 cut(s) 1427
Eco31I GGTCTC 1 cut(s) 1135
Eco47I GGWCC 1 cut(s) 474
Eco52I CGGCCG 1 cut(s) 438
Eco53kI GAGCTC 1 cut(s) 1425
EcoICRI GAGCTC 1 cut(s) 1425
EcoRII CCWGG 3 cut(s) 38, 413, 967
EcoT14I CCWWGG 2 cut(s) 153, 1164
EcoT38I GRGCYC 1 cut(s) 1427
EgeI GGCGCC 1 cut(s) 836
EheI GGCGCC 1 cut(s) 836
ErhI CCWWGG 2 cut(s) 153, 1164
Esp3I CGTCTC 1 cut(s) 185
FaqI GGGAC 1 cut(s) 189
FbaI TGATCA 1 cut(s) 1464
FblI GTMKAC 1 cut(s) 531
Fnu4HI GCNGC 6 cut(s) 246, 441, 453, 800, 933, 1266
FokI GGATG 4 cut(s) 93, 329, 551, 731
FriOI GRGCYC 1 cut(s) 1427
Fsp4HI GCNGC 6 cut(s) 246, 441, 453, 800, 933, 1266
FspBI CTAG 5 cut(s) 8, 113, 827, 993, 1510
GlaI GCGC 1 cut(s) 836
GluI GCNGC 6 cut(s) 246, 441, 453, 800, 933, 1266
GsuI CTGGAG 3 cut(s) 61, 397, 951
HaeII RGCGCY 1 cut(s) 838
HaeIII GGCC 4 cut(s) 152, 399, 440, 862
HapII CCGG 5 cut(s) 59, 339, 456, 555, 1397
HgaI GACGC 2 cut(s) 798, 1393
HhaI GCGC 1 cut(s) 837
Hin1I GRCGYC 2 cut(s) 279, 835
Hin6I GCGC 1 cut(s) 835
HinP1I GCGC 1 cut(s) 835
HincII GTYRAC 1 cut(s) 283
HindII GTYRAC 1 cut(s) 283
HindIII AAGCTT 1 cut(s) 238
HinfI GANTC 6 cut(s) 342, 459, 547, 606, 964, 1429
HpaII CCGG 5 cut(s) 59, 339, 456, 555, 1397
HphI GGTGA 2 cut(s) 314, 1348
Hpy166II GTNNAC 3 cut(s) 94, 283, 532
Hpy188I TCNGA 3 cut(s) 464, 478, 1422
Hpy188III TCNNGA 6 cut(s) 113, 311, 813, 1298, 1318, 1411
Hpy8I GTNNAC 3 cut(s) 94, 283, 532
HpyAV CCTTC 6 cut(s) 301, 523, 601, 610, 753, 999
HpyCH4III ACNGT 5 cut(s) 223, 663, 750, 1129, 1374
HpyCH4IV ACGT 4 cut(s) 194, 279, 534, 1210
HpyCH4V TGCA 9 cut(s) 25, 248, 328, 680, 722, 802, 878, 1351, 1439
HpyF10VI GCNNNNNNNGC 6 cut(s) 59, 206, 259, 449, 1034, 1393
HpyF3I CTNAG 6 cut(s) 145, 565, 890, 1146, 1152, 1421
HpySE526I ACGT 4 cut(s) 194, 279, 534, 1210
Hsp92I GRCGYC 2 cut(s) 279, 835
HspAI GCGC 1 cut(s) 835
KasI GGCGCC 1 cut(s) 834
KroI GCCGGC 1 cut(s) 1396
KroNI GCCGGC 1 cut(s) 1398
Ksp22I TGATCA 1 cut(s) 1464
Kzo9I GATC 5 cut(s) 99, 304, 998, 1058, 1464
LmnI GCTCC 6 cut(s) 58, 205, 358, 734, 1099, 1166
Lsp1109I GCAGC 4 cut(s) 232, 464, 786, 944
LweI GCATC 4 cut(s) 271, 709, 796, 1015
MaeI CTAG 5 cut(s) 8, 113, 827, 993, 1510
MaeII ACGT 4 cut(s) 194, 279, 534, 1210
MaeIII GTNAC 3 cut(s) 131, 378, 1186
MalI GATC 5 cut(s) 101, 306, 1000, 1060, 1466
MbiI CCGCTC 1 cut(s) 443
MboI GATC 5 cut(s) 99, 304, 998, 1058, 1464
MboII GAAGA 5 cut(s) 299, 834, 1068, 1120, 1399
MfeI CAATTG 1 cut(s) 329
MflI RGATCY 1 cut(s) 998
MhlI GDGCHC 1 cut(s) 1427
MlsI TGGCCA 1 cut(s) 152
MluNI TGGCCA 1 cut(s) 152
Mly113I GGCGCC 1 cut(s) 835
MlyI GAGTC 1 cut(s) 958
MmeI TCCRAC 3 cut(s) 54, 501, 1503
Mox20I TGGCCA 1 cut(s) 152
MroNI GCCGGC 1 cut(s) 1396
MscI TGGCCA 1 cut(s) 152
MseI TTAA 6 cut(s) 236, 632, 683, 1380, 1448, 1497
MslI CAYNNNNRTG 1 cut(s) 315
Msp20I TGGCCA 1 cut(s) 152
MspI CCGG 5 cut(s) 59, 339, 456, 555, 1397
MspR9I CCNGG 5 cut(s) 40, 339, 415, 556, 969
MunI CAATTG 1 cut(s) 329
MvaI CCWGG 3 cut(s) 40, 415, 969
MwoI GCNNNNNNNGC 6 cut(s) 59, 206, 259, 449, 1034, 1393
NaeI GCCGGC 1 cut(s) 1398
NarI GGCGCC 1 cut(s) 835
NciI CCSGG 2 cut(s) 339, 556
NcoI CCATGG 1 cut(s) 1164
NdeII GATC 5 cut(s) 99, 304, 998, 1058, 1464
NgoMIV GCCGGC 1 cut(s) 1396
NlaIV GGNNCC 5 cut(s) 54, 511, 736, 752, 836
NspI RCATGY 1 cut(s) 368
NspV TTCGAA 2 cut(s) 345, 496
PagI TCATGA 2 cut(s) 310, 1297
PceI AGGCCT 1 cut(s) 862
PciI ACATGT 1 cut(s) 364
PdiI GCCGGC 1 cut(s) 1398
PfeI GAWTC 5 cut(s) 342, 459, 547, 606, 1429
PflMI CCANNNNNTGG 1 cut(s) 420
PfoI TCCNGGA 1 cut(s) 967
PkrI GCNGC 6 cut(s) 247, 442, 454, 801, 934, 1267
PleI GAGTC 1 cut(s) 958
PluTI GGCGCC 1 cut(s) 838
PpsI GAGTC 1 cut(s) 958
Ppu21I YACGTR 2 cut(s) 535, 1211
PscI ACATGT 1 cut(s) 364
Psp124BI GAGCTC 1 cut(s) 1427
Psp6I CCWGG 3 cut(s) 38, 413, 967
PspGI CCWGG 3 cut(s) 38, 413, 967
PspN4I GGNNCC 5 cut(s) 54, 511, 736, 752, 836
PspPI GGNCC 1 cut(s) 474
PsuI RGATCY 1 cut(s) 998
RsaI GTAC 3 cut(s) 95, 882, 1233
RsaNI GTAC 3 cut(s) 94, 881, 1232
RseI CAYNNNNRTG 1 cut(s) 315
SacI GAGCTC 1 cut(s) 1427
SaqAI TTAA 6 cut(s) 236, 632, 683, 1380, 1448, 1497
SatI GCNGC 6 cut(s) 246, 441, 453, 800, 933, 1266
Sau3AI GATC 5 cut(s) 99, 304, 998, 1058, 1464
Sau96I GGNCC 1 cut(s) 474
SchI GAGTC 1 cut(s) 958
ScrFI CCNGG 5 cut(s) 40, 339, 415, 556, 969
SduI GDGCHC 1 cut(s) 1427
SfaNI GCATC 4 cut(s) 271, 709, 796, 1015
SfoI GGCGCC 1 cut(s) 836
SfuI TTCGAA 2 cut(s) 345, 496
SinI GGWCC 1 cut(s) 474
SmiMI CAYNNNNRTG 1 cut(s) 315
SmlI CTYRAG 2 cut(s) 446, 1483
SmoI CTYRAG 2 cut(s) 446, 1483
SpeI ACTAGT 1 cut(s) 826
SseBI AGGCCT 1 cut(s) 862
SsiI CCGC 3 cut(s) 441, 1028, 1265
SspDI GGCGCC 1 cut(s) 834
SspMI CTAG 5 cut(s) 8, 113, 827, 993, 1510
SstI GAGCTC 1 cut(s) 1427
StuI AGGCCT 1 cut(s) 862
StyD4I CCNGG 5 cut(s) 38, 337, 413, 554, 967
StyI CCWWGG 2 cut(s) 153, 1164
TaaI ACNGT 5 cut(s) 223, 663, 750, 1129, 1374
TaiI ACGT 4 cut(s) 197, 282, 537, 1213
TaqI TCGA 4 cut(s) 345, 496, 1317, 1427
TatI WGTACW 2 cut(s) 93, 880
TauI GCSGC 2 cut(s) 443, 1268
TfiI GAWTC 5 cut(s) 342, 459, 547, 606, 1429
Tru1I TTAA 6 cut(s) 236, 632, 683, 1380, 1448, 1497
Tru9I TTAA 6 cut(s) 236, 632, 683, 1380, 1448, 1497
TscAI CASTG 2 cut(s) 523, 1245
TseI GCWGC 4 cut(s) 245, 452, 799, 932
TspDTI ATGAA 3 cut(s) 299, 1092, 1286
TspGWI ACGGA 1 cut(s) 215
TspRI CASTG 2 cut(s) 523, 1245
Van91I CCANNNNNTGG 1 cut(s) 420
VpaK11BI GGWCC 1 cut(s) 474
XapI RAATTY 2 cut(s) 708, 1243
XbaI TCTAGA 1 cut(s) 112
XceI RCATGY 1 cut(s) 368
XmiI GTMKAC 1 cut(s) 531
XspI CTAG 5 cut(s) 8, 113, 827, 993, 1510
ZraI GACGTC 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.