Reverse transcriptase (RNA-dependent DNA polymerase)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_2 | PF07727 | 2 - 106 | 3.5e-20 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 585 |
| AccIII | TCCGGA | 1 cut(s) | 570 |
| AcsI | RAATTY | 1 cut(s) | 161 |
| AcvI | CACGTG | 1 cut(s) | 218 |
| AfaI | GTAC | 1 cut(s) | 341 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 472, 530 |
| AgsI | TTSAA | 4 cut(s) | 134, 190, 209, 547 |
| AjnI | CCWGG | 1 cut(s) | 523 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 182, 214 |
| AluBI | AGCT | 1 cut(s) | 422 |
| AluI | AGCT | 1 cut(s) | 422 |
| Aor13HI | TCCGGA | 1 cut(s) | 570 |
| ApeKI | GCWGC | 1 cut(s) | 505 |
| ApoI | RAATTY | 1 cut(s) | 161 |
| AseI | ATTAAT | 1 cut(s) | 536 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 194 |
| AspS9I | GGNCC | 2 cut(s) | 346, 475 |
| AsuHPI | GGTGA | 3 cut(s) | 82, 125, 457 |
| AvaII | GGWCC | 2 cut(s) | 346, 475 |
| BbrPI | CACGTG | 1 cut(s) | 218 |
| BbvI | GCAGC | 1 cut(s) | 492 |
| BciT130I | CCWGG | 1 cut(s) | 525 |
| BciVI | GTATCC | 1 cut(s) | 8 |
| BfaI | CTAG | 4 cut(s) | 260, 287, 414, 419 |
| BfuAI | ACCTGC | 1 cut(s) | 585 |
| BfuI | GTATCC | 1 cut(s) | 8 |
| BisI | GCNGC | 1 cut(s) | 506 |
| BlsI | GCNGC | 1 cut(s) | 507 |
| Bme1390I | CCNGG | 1 cut(s) | 525 |
| Bme18I | GGWCC | 2 cut(s) | 346, 475 |
| BmgT120I | GGNCC | 2 cut(s) | 346, 475 |
| BmrFI | CCNGG | 1 cut(s) | 525 |
| BmrI | ACTGGG | 2 cut(s) | 462, 599 |
| BmsI | GCATC | 1 cut(s) | 475 |
| BmuI | ACTGGG | 2 cut(s) | 462, 599 |
| BpmI | CTGGAG | 1 cut(s) | 507 |
| BsaAI | YACGTR | 2 cut(s) | 218, 343 |
| BsaWI | WCCGGW | 1 cut(s) | 570 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 472, 530 |
| Bse1I | ACTGG | 2 cut(s) | 468, 594 |
| BseAI | TCCGGA | 1 cut(s) | 570 |
| BseBI | CCWGG | 1 cut(s) | 525 |
| BseGI | GGATG | 2 cut(s) | 325, 490 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 472, 530 |
| BseNI | ACTGG | 2 cut(s) | 468, 594 |
| BseRI | GAGGAG | 1 cut(s) | 140 |
| BseXI | GCAGC | 1 cut(s) | 492 |
| BsiSI | CCGG | 1 cut(s) | 571 |
| BslFI | GGGAC | 1 cut(s) | 391 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 472, 530 |
| BsmFI | GGGAC | 1 cut(s) | 391 |
| Bsp13I | TCCGGA | 1 cut(s) | 570 |
| Bsp143I | GATC | 1 cut(s) | 34 |
| BspEI | TCCGGA | 1 cut(s) | 570 |
| BspMI | ACCTGC | 1 cut(s) | 585 |
| BsrI | ACTGG | 2 cut(s) | 468, 594 |
| BssMI | GATC | 1 cut(s) | 34 |
| Bst2UI | CCWGG | 1 cut(s) | 525 |
| Bst4CI | ACNGT | 1 cut(s) | 393 |
| BstBAI | YACGTR | 2 cut(s) | 218, 343 |
| BstDEI | CTNAG | 1 cut(s) | 560 |
| BstF5I | GGATG | 2 cut(s) | 325, 490 |
| BstKTI | GATC | 1 cut(s) | 37 |
| BstMBI | GATC | 1 cut(s) | 34 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 591 |
| BstNI | CCWGG | 1 cut(s) | 525 |
| BstSCI | CCNGG | 1 cut(s) | 523 |
| BstV1I | GCAGC | 1 cut(s) | 492 |
| BsuI | GTATCC | 1 cut(s) | 8 |
| BtsCI | GGATG | 2 cut(s) | 325, 490 |
| BveI | ACCTGC | 1 cut(s) | 585 |
| Cfr13I | GGNCC | 2 cut(s) | 346, 475 |
| CseI | GACGC | 1 cut(s) | 591 |
| Csp6I | GTAC | 1 cut(s) | 340 |
| CviAII | CATG | 1 cut(s) | 100 |
| CviJI | RGCY | 2 cut(s) | 422, 428 |
| CviKI_1 | RGCY | 2 cut(s) | 422, 428 |
| CviQI | GTAC | 1 cut(s) | 340 |
| DdeI | CTNAG | 1 cut(s) | 560 |
| DpnI | GATC | 1 cut(s) | 36 |
| DpnII | GATC | 1 cut(s) | 34 |
| DraI | TTTAAA | 1 cut(s) | 513 |
| Eco47I | GGWCC | 2 cut(s) | 346, 475 |
| Eco72I | CACGTG | 1 cut(s) | 218 |
| EcoRII | CCWGG | 1 cut(s) | 523 |
| EcoT22I | ATGCAT | 1 cut(s) | 462 |
| FaeI | CATG | 1 cut(s) | 103 |
| FaqI | GGGAC | 1 cut(s) | 391 |
| FatI | CATG | 1 cut(s) | 99 |
| FauNDI | CATATG | 1 cut(s) | 480 |
| Fnu4HI | GCNGC | 1 cut(s) | 506 |
| FokI | GGATG | 2 cut(s) | 312, 497 |
| Fsp4HI | GCNGC | 1 cut(s) | 506 |
| FspBI | CTAG | 4 cut(s) | 260, 287, 414, 419 |
| GluI | GCNGC | 1 cut(s) | 506 |
| GsuI | CTGGAG | 1 cut(s) | 507 |
| HapII | CCGG | 1 cut(s) | 571 |
| HgaI | GACGC | 1 cut(s) | 591 |
| Hin1II | CATG | 1 cut(s) | 103 |
| HinfI | GANTC | 4 cut(s) | 130, 241, 322, 448 |
| HpaII | CCGG | 1 cut(s) | 571 |
| HphI | GGTGA | 3 cut(s) | 82, 125, 457 |
| Hpy166II | GTNNAC | 2 cut(s) | 296, 346 |
| Hpy188I | TCNGA | 2 cut(s) | 160, 246 |
| Hpy188III | TCNNGA | 1 cut(s) | 571 |
| Hpy8I | GTNNAC | 2 cut(s) | 296, 346 |
| Hpy99I | CGWCG | 1 cut(s) | 393 |
| HpyAV | CCTTC | 1 cut(s) | 217 |
| HpyCH4III | ACNGT | 1 cut(s) | 393 |
| HpyCH4IV | ACGT | 2 cut(s) | 217, 342 |
| HpyCH4V | TGCA | 4 cut(s) | 215, 434, 460, 508 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 591 |
| HpyF3I | CTNAG | 1 cut(s) | 560 |
| HpySE526I | ACGT | 2 cut(s) | 217, 342 |
| Hsp92II | CATG | 1 cut(s) | 103 |
| Kpn2I | TCCGGA | 1 cut(s) | 570 |
| Kzo9I | GATC | 1 cut(s) | 34 |
| LmnI | GCTCC | 1 cut(s) | 526 |
| LpnPI | CCDG | 9 cut(s) | 96, 312, 389, 481, 510, 537, 575, 580, 584 |
| Lsp1109I | GCAGC | 1 cut(s) | 492 |
| LweI | GCATC | 1 cut(s) | 475 |
| MaeI | CTAG | 4 cut(s) | 260, 287, 414, 419 |
| MaeII | ACGT | 2 cut(s) | 217, 342 |
| MaeIII | GTNAC | 3 cut(s) | 70, 106, 138 |
| MalI | GATC | 1 cut(s) | 36 |
| MboI | GATC | 1 cut(s) | 34 |
| MboII | GAAGA | 1 cut(s) | 16 |
| MluCI | AATT | 6 cut(s) | 9, 28, 161, 184, 204, 537 |
| MlyI | GAGTC | 2 cut(s) | 250, 457 |
| MnlI | CCTC | 4 cut(s) | 118, 166, 240, 372 |
| Mph1103I | ATGCAT | 1 cut(s) | 462 |
| MroI | TCCGGA | 1 cut(s) | 570 |
| MroXI | GAANNNNTTC | 1 cut(s) | 194 |
| MseI | TTAA | 3 cut(s) | 51, 512, 536 |
| MslI | CAYNNNNRTG | 4 cut(s) | 60, 104, 483, 562 |
| MspI | CCGG | 1 cut(s) | 571 |
| MspR9I | CCNGG | 1 cut(s) | 525 |
| MvaI | CCWGG | 1 cut(s) | 525 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 591 |
| NdeI | CATATG | 1 cut(s) | 480 |
| NdeII | GATC | 1 cut(s) | 34 |
| NlaIII | CATG | 1 cut(s) | 103 |
| NmuCI | GTSAC | 2 cut(s) | 70, 106 |
| NsiI | ATGCAT | 1 cut(s) | 462 |
| PdmI | GAANNNNTTC | 1 cut(s) | 194 |
| PfeI | GAWTC | 2 cut(s) | 130, 322 |
| PkrI | GCNGC | 1 cut(s) | 507 |
| PleI | GAGTC | 2 cut(s) | 249, 456 |
| PmaCI | CACGTG | 1 cut(s) | 218 |
| PmlI | CACGTG | 1 cut(s) | 218 |
| PpsI | GAGTC | 2 cut(s) | 249, 456 |
| Ppu21I | YACGTR | 2 cut(s) | 218, 343 |
| PshBI | ATTAAT | 1 cut(s) | 536 |
| Psp6I | CCWGG | 1 cut(s) | 523 |
| PspCI | CACGTG | 1 cut(s) | 218 |
| PspGI | CCWGG | 1 cut(s) | 523 |
| PspPI | GGNCC | 2 cut(s) | 346, 475 |
| RsaI | GTAC | 1 cut(s) | 341 |
| RsaNI | GTAC | 1 cut(s) | 340 |
| RseI | CAYNNNNRTG | 4 cut(s) | 60, 104, 483, 562 |
| SaqAI | TTAA | 3 cut(s) | 51, 512, 536 |
| SatI | GCNGC | 1 cut(s) | 506 |
| Sau3AI | GATC | 1 cut(s) | 34 |
| Sau96I | GGNCC | 2 cut(s) | 346, 475 |
| SchI | GAGTC | 2 cut(s) | 250, 457 |
| ScrFI | CCNGG | 1 cut(s) | 525 |
| SfaNI | GCATC | 1 cut(s) | 475 |
| SinI | GGWCC | 2 cut(s) | 346, 475 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 60, 104, 483, 562 |
| Sse9I | AATT | 6 cut(s) | 9, 28, 161, 184, 204, 537 |
| SspI | AATATT | 1 cut(s) | 194 |
| SspMI | CTAG | 4 cut(s) | 260, 287, 414, 419 |
| StyD4I | CCNGG | 1 cut(s) | 523 |
| TaaI | ACNGT | 1 cut(s) | 393 |
| TaiI | ACGT | 2 cut(s) | 220, 345 |
| TaqI | TCGA | 2 cut(s) | 315, 388 |
| TasI | AATT | 6 cut(s) | 9, 28, 161, 184, 204, 537 |
| TfiI | GAWTC | 2 cut(s) | 130, 322 |
| Tru1I | TTAA | 3 cut(s) | 51, 512, 536 |
| Tru9I | TTAA | 3 cut(s) | 51, 512, 536 |
| TseFI | GTSAC | 2 cut(s) | 70, 106 |
| TseI | GCWGC | 1 cut(s) | 505 |
| Tsp45I | GTSAC | 2 cut(s) | 70, 106 |
| TspDTI | ATGAA | 3 cut(s) | 17, 185, 485 |
| TspGWI | ACGGA | 1 cut(s) | 318 |
| VpaK11BI | GGWCC | 2 cut(s) | 346, 475 |
| VspI | ATTAAT | 1 cut(s) | 536 |
| XapI | RAATTY | 1 cut(s) | 161 |
| XmnI | GAANNNNTTC | 1 cut(s) | 194 |
| XspI | CTAG | 4 cut(s) | 260, 287, 414, 419 |
| Zsp2I | ATGCAT | 1 cut(s) | 462 |