RchiOBHm_Chr3g0450961

NB-ARC domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000071
Physical Location & Seq
Reverse (-)
2266894 .. 2267703
810 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41827

Sequence Viewer

Length: 732 bp
ATGCATGAAGATACTTCCCGGGAGACTCACCCACAGGTAAACCCTTGTCAAGAAGTAGTTTTGCATAATCCCATTGAGTCTAATCATTCATCTACTCCTAGAAGACCTGTTGAACCTAGATATCCTCAAAGATCAAACAAGGGAATTCCAAGGAAACAGTATGAACCTGATCTTAGGACAAAAGCCAAATATCCAATAGCTAACCATGTGACTACCCATAGGTTGTCCGAGTCATATGCACTAACTGTCAATCAATTATCTACTGTGGCTATTCCTAGAACTGTGCAGGAAGCATTAGATGACCCAAAGTGGAGGATAGCAATGAATGAAGAGATGGAAGCACTTCAGAAGAATGATACTTGGGAGATTGCACCGTTACCTCAAGGAAAGAAGACTATCGGATGTAGATGGATATATACAGTGAAACTTAAGGCAGATGGGAGCATAGACAGGTACAAAGCAAGACTTGTAGCAAAAGGCTATACCCAGAAGTATGGAGTTGACTATCAGGAGACATTTGCTCCAGTGGCGAAAATTAATACCATTAGAATACTTATGTCTTTGGCCGCCACATATGATTGGCCATTACAACAGTATGATGTGAAGAATGCGTTCCTACATGGAGATTTAGAAGAAGAAGTTTATATGGACATGCCGCTGATGGGCTCATATTTTCCTATATTTCTATGCCTCTTAATCTTGGTTTTTATGTTTAGTTCTCTTTATTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC RVT_2 TIR

Protein Analysis

243

Amino Acids

28.14

Weight (kDa)

7.72

Isoelectric Point (pI)

48.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_2 PF07727 118 - 219 1.6e-32 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000071)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G23160 AT4G23160
fragaria_vesca FvH4_2g08111 FvH4_2g17332 FvH4_2g18071 FvH4_2g20531 FvH4_2g20842 FvH4_2g20842 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g23401 FvH4_2g24231 FvH4_2g24232 FvH4_3g00831 FvH4_3g00831 FvH4_3g03561 FvH4_3g03561 FvH4_3g10282 FvH4_3g18165 FvH4_3g19021 FvH4_3g24071 FvH4_3g33123 FvH4_3g33970 FvH4_3g38851 FvH4_3g39133 FvH4_3g39271 FvH4_4g00981 FvH4_4g08191 FvH4_4g08311 FvH4_4g08311 FvH4_4g08311 FvH4_4g09341 FvH4_4g12550 FvH4_4g12550 FvH4_4g12550 FvH4_4g13391 FvH4_4g14842 FvH4_4g27901 FvH4_5g11561 FvH4_5g15611 FvH4_5g17991 FvH4_5g27871 FvH4_5g29995 FvH4_5g39662 FvH4_6g02392 FvH4_6g12781 FvH4_6g20106 FvH4_6g20106 FvH4_6g20106 FvH4_6g30872 FvH4_6g34901 FvH4_6g35632 FvH4_6g36661 FvH4_6g43795 FvH4_6g44611 FvH4_7g01791 FvH4_7g04041 FvH4_7g12551 FvH4_7g23351
malus_domestica MD00G1134200.v1.1 MD01G1096500.v1.1 MD01G1128200.v1.1 MD02G1250500.v1.1 MD02G1294900.v1.1 MD03G1121800.v1.1 MD04G1021400.v1.1 MD04G1051100.v1.1 MD04G1051300.v1.1 MD04G1099000.v1.1 MD05G1047900.v1.1 MD05G1298000.v1.1 MD06G1064200.v1.1 MD06G1120600.v1.1 MD07G1013900.v1.1 MD09G1226900.v1.1 MD10G1196700.v1.1 MD10G1307000.v1.1 MD10G1338900.v1.1 MD11G1107300.v1.1 MD11G1138300.v1.1 MD11G1236700.v1.1 MD12G1032500.v1.1 MD12G1150100.v1.1 MD12G1247800.v1.1 MD17G1267900.v1.1
pyrus_communis pycom02g03660 pycom02g13370 pycom02g14840 pycom02g18400 pycom02g18880 pycom02g22740 pycom04g08800 pycom04g15770 pycom05g07980 pycom05g19640 pycom06g09360 pycom07g13160 pycom08g11820 pycom08g21740 pycom09g19980 pycom10g04810 pycom10g05420 pycom10g14650 pycom11g03140 pycom11g21550 pycom12g14740 pycom13g01600 pycom13g29510 pycom14g07060 pycom15g01990 pycom15g19850 pycom15g30860 pycom16g15290 pycom16g16250 pycom16g25390 pycom17g17270 pycom520g00070
rosa_chinensis RchiOBHm_Chr1g0316691 RchiOBHm_Chr1g0320751 RchiOBHm_Chr1g0320771 RchiOBHm_Chr1g0322231 RchiOBHm_Chr1g0322861 RchiOBHm_Chr1g0328471 RchiOBHm_Chr1g0333321 RchiOBHm_Chr1g0337871 RchiOBHm_Chr1g0339051 RchiOBHm_Chr1g0349861 RchiOBHm_Chr1g0361951 RchiOBHm_Chr1g0365931 RchiOBHm_Chr1g0365981 RchiOBHm_Chr1g0377711 RchiOBHm_Chr1g0381581 RchiOBHm_Chr1g0382741 RchiOBHm_Chr1g0383501 RchiOBHm_Chr2g0101201 RchiOBHm_Chr2g0113601 RchiOBHm_Chr2g0124031 RchiOBHm_Chr2g0135481 RchiOBHm_Chr2g0148361 RchiOBHm_Chr2g0150101 RchiOBHm_Chr2g0154181 RchiOBHm_Chr2g0156071 RchiOBHm_Chr2g0166521 RchiOBHm_Chr2g0166821 RchiOBHm_Chr3g0448011 RchiOBHm_Chr3g0450941 RchiOBHm_Chr3g0450961 RchiOBHm_Chr3g0451051 RchiOBHm_Chr3g0451721 RchiOBHm_Chr3g0453371 RchiOBHm_Chr3g0454881 RchiOBHm_Chr3g0457421 RchiOBHm_Chr3g0457661 RchiOBHm_Chr3g0460011 RchiOBHm_Chr3g0461531 RchiOBHm_Chr3g0461981 RchiOBHm_Chr3g0463471 RchiOBHm_Chr3g0466641 RchiOBHm_Chr3g0468181 RchiOBHm_Chr3g0483351 RchiOBHm_Chr4g0394001 RchiOBHm_Chr4g0397261 RchiOBHm_Chr4g0404531 RchiOBHm_Chr4g0410841 RchiOBHm_Chr4g0415501 RchiOBHm_Chr4g0425221 RchiOBHm_Chr4g0430811 RchiOBHm_Chr5g0010831 RchiOBHm_Chr5g0016831 RchiOBHm_Chr5g0016851 RchiOBHm_Chr5g0031351 RchiOBHm_Chr5g0032151 RchiOBHm_Chr5g0041201 RchiOBHm_Chr5g0042191 RchiOBHm_Chr5g0064121 RchiOBHm_Chr5g0066601 RchiOBHm_Chr5g0078371 RchiOBHm_Chr5g0079271 RchiOBHm_Chr6g0263751 RchiOBHm_Chr6g0285111 RchiOBHm_Chr6g0298961 RchiOBHm_Chr6g0300481 RchiOBHm_Chr6g0303211 RchiOBHm_Chr7g0192341 RchiOBHm_Chr7g0196171 RchiOBHm_Chr7g0200281 RchiOBHm_Chr7g0200551 RchiOBHm_Chr7g0207611 RchiOBHm_Chr7g0212421 RchiOBHm_Chr7g0214991 RchiOBHm_Chr7g0219211 RchiOBHm_Chr7g0242371
rosa_laevigata RLG00000002389 RLG00000007980
rosa_roxburghii Rroxscaffold_1G00053480 Rroxscaffold_2G00090890 Rroxscaffold_2G00099660 Rroxscaffold_2G00134510 Rroxscaffold_3G00221450 Rroxscaffold_3G00240550 Rroxscaffold_4G00305710 Rroxscaffold_4G00306360 Rroxscaffold_4G00306800 Rroxscaffold_4G00329090 Rroxscaffold_5G00382750 Rroxscaffold_5G00385900 Rroxscaffold_6G00403080 Rroxscaffold_7G00172890 Rroxscaffold_7G00186690
rosa_samantha Rh1DG425600
rosa_wichuraiana Rw0G001640 Rw0G009160 Rw0G010480 Rw0G010520 Rw0G013850 Rw0G017170 Rw0G018520 Rw0G019280 Rw0G022780 Rw1G000360 Rw1G001410 Rw1G001630 Rw1G002100 Rw1G006810 Rw1G010680 Rw1G012700 Rw1G016160 Rw1G022180 Rw1G023580 Rw1G025640 Rw1G026310 Rw1G027230 Rw1G028110 Rw1G034180 Rw2G004990 Rw2G005840 Rw2G007350 Rw2G024730 Rw2G025580 Rw2G026670 Rw2G027210 Rw2G029060 Rw2G031560 Rw2G042190 Rw2G043850 Rw2G045990 Rw2G046130 Rw2G049290 Rw2G049310 Rw2G049790 Rw2G052250 Rw3G004350 Rw3G013100 Rw3G015280 Rw3G015720 Rw3G024630 Rw3G026470 Rw3G027840 Rw3G028960 Rw3G029130 Rw3G029160 Rw4G000280 Rw4G006650 Rw4G008970 Rw4G009310 Rw4G011730 Rw4G012000 Rw4G012610 Rw4G014300 Rw4G014690 Rw4G015190 Rw4G016470 Rw4G020750 Rw4G025060 Rw4G025080 Rw5G005610 Rw5G010380 Rw5G013970 Rw5G015130 Rw5G015250 Rw5G017640 Rw5G019910 Rw5G022410 Rw5G023550 Rw5G029710 Rw5G037650 Rw5G038280 Rw5G038570 Rw5G041550 Rw5G042600 Rw5G043910 Rw5G047850 Rw5G048200 Rw5G049920 Rw6G000260 Rw6G000530 Rw6G001710 Rw6G005090 Rw6G006730 Rw6G009310 Rw6G010950 Rw6G011630 Rw6G012080 Rw6G012750 Rw6G015970 Rw6G020700 Rw6G024350 Rw7G008540 Rw7G016620 Rw7G019400 Rw7G020010 Rw7G024240 Rw7G025630 Rw7G027550 Rw7G027770 Rw7G027960 Rw7G028450 Rw7G031280 Rw7G031970 Rw7G032180 Rw7G033590 Rw7G033720 Rw7G033890 Rw7G041800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 567, 656
AcoI YGGCCR 2 cut(s) 564, 581
AcsI RAATTY 1 cut(s) 144
AcuI CTGAAG 1 cut(s) 329
AfaI GTAC 1 cut(s) 455
AfiI CCNNNNNNNGG 1 cut(s) 662
AflII CTTAAG 1 cut(s) 428
AgsI TTSAA 1 cut(s) 113
AluBI AGCT 1 cut(s) 200
AluI AGCT 1 cut(s) 200
Alw26I GTCTC 2 cut(s) 17, 506
Ama87I CYCGRG 1 cut(s) 18
AoxI GGCC 2 cut(s) 564, 581
ApoI RAATTY 1 cut(s) 144
AseI ATTAAT 1 cut(s) 537
Asp700I GAANNNNTTC 2 cut(s) 342, 611
AsuC2I CCSGG 2 cut(s) 19, 20
AsuHPI GGTGA 1 cut(s) 20
AvaI CYCGRG 1 cut(s) 18
BalI TGGCCA 1 cut(s) 583
BanII GRGCYC 1 cut(s) 668
BbsI GAAGAC 2 cut(s) 109, 398
BccI CCATC 4 cut(s) 328, 402, 431, 655
BcgI CGANNNNNNTGC 2 cut(s) 218, 252
BcnI CCSGG 2 cut(s) 19, 20
BcoDI GTCTC 2 cut(s) 17, 506
BfaI CTAG 3 cut(s) 99, 117, 276
BfrI CTTAAG 1 cut(s) 428
BisI GCNGC 2 cut(s) 567, 656
BlsI GCNGC 2 cut(s) 568, 657
Bme1390I CCNGG 2 cut(s) 19, 20
BmeT110I CYCGRG 1 cut(s) 18
BmrFI CCNGG 2 cut(s) 19, 20
BpiI GAAGAC 2 cut(s) 109, 398
BpmI CTGGAG 1 cut(s) 507
BpuEI CTTGAG 1 cut(s) 366
BpuMI CCSGG 2 cut(s) 19, 20
BsaJI CCNNGG 2 cut(s) 18, 149
BsaXI ACNNNNNCTCC 2 cut(s) 505, 535
Bsc4I CCNNNNNNNGG 1 cut(s) 662
Bse1I ACTGG 1 cut(s) 524
Bse3DI GCAATG 1 cut(s) 327
BseDI CCNNGG 2 cut(s) 18, 149
BseGI GGATG 1 cut(s) 407
BseLI CCNNNNNNNGG 1 cut(s) 662
BseMI GCAATG 1 cut(s) 327
BseNI ACTGG 1 cut(s) 524
BsgI GTGCAG 1 cut(s) 305
BshFI GGCC 2 cut(s) 566, 583
BsiHKCI CYCGRG 1 cut(s) 18
BsiSI CCGG 1 cut(s) 19
BslI CCNNNNNNNGG 1 cut(s) 662
BsmAI GTCTC 2 cut(s) 17, 506
BsmI GAATGC 1 cut(s) 613
BsnI GGCC 2 cut(s) 566, 583
BsoBI CYCGRG 1 cut(s) 18
Bsp1286I GDGCHC 1 cut(s) 668
Bsp143I GATC 2 cut(s) 131, 169
BspACI CCGC 2 cut(s) 567, 656
BspANI GGCC 2 cut(s) 566, 583
BspTI CTTAAG 1 cut(s) 428
BsrDI GCAATG 1 cut(s) 327
BsrI ACTGG 1 cut(s) 524
BssECI CCNNGG 2 cut(s) 18, 149
BssMI GATC 2 cut(s) 131, 169
BssT1I CCWWGG 1 cut(s) 149
Bst4CI ACNGT 7 cut(s) 159, 247, 265, 283, 375, 421, 594
Bst6I CTCTTC 1 cut(s) 324
BstAFI CTTAAG 1 cut(s) 428
BstDEI CTNAG 1 cut(s) 173
BstF5I GGATG 1 cut(s) 407
BstKTI GATC 2 cut(s) 134, 172
BstMAI GTCTC 2 cut(s) 17, 506
BstMBI GATC 2 cut(s) 131, 169
BstMWI GCNNNNNNNGC 1 cut(s) 527
BstNSI RCATGY 1 cut(s) 655
BstSCI CCNGG 2 cut(s) 17, 18
BstV2I GAAGAC 2 cut(s) 109, 398
BstXI CCANNNNNNTGG 1 cut(s) 494
BsuRI GGCC 2 cut(s) 566, 583
BtsCI GGATG 1 cut(s) 407
BtsIMutI CAGTG 2 cut(s) 426, 531
Cfr9I CCCGGG 1 cut(s) 18
Csp6I GTAC 1 cut(s) 454
CviAII CATG 4 cut(s) 5, 206, 620, 652
CviJI RGCY 7 cut(s) 185, 200, 269, 480, 566, 583, 666
CviKI_1 RGCY 7 cut(s) 185, 200, 269, 480, 566, 583, 666
CviQI GTAC 1 cut(s) 454
DdeI CTNAG 1 cut(s) 173
DpnI GATC 2 cut(s) 133, 171
DpnII GATC 2 cut(s) 131, 169
EaeI YGGCCR 2 cut(s) 564, 581
Eam1104I CTCTTC 1 cut(s) 324
EarI CTCTTC 1 cut(s) 324
Eco130I CCWWGG 1 cut(s) 149
Eco24I GRGCYC 1 cut(s) 668
Eco32I GATATC 1 cut(s) 122
Eco57I CTGAAG 1 cut(s) 329
Eco88I CYCGRG 1 cut(s) 18
EcoRI GAATTC 1 cut(s) 144
EcoRV GATATC 1 cut(s) 122
EcoT14I CCWWGG 1 cut(s) 149
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 668
ErhI CCWWGG 1 cut(s) 149
FaeI CATG 4 cut(s) 8, 209, 623, 655
FalI AAGNNNNNCTT 2 cut(s) 450, 482
FatI CATG 4 cut(s) 4, 205, 619, 651
FauNDI CATATG 2 cut(s) 235, 574
Fnu4HI GCNGC 2 cut(s) 567, 656
FokI GGATG 1 cut(s) 414
FriOI GRGCYC 1 cut(s) 668
Fsp4HI GCNGC 2 cut(s) 567, 656
FspBI CTAG 3 cut(s) 99, 117, 276
GluI GCNGC 2 cut(s) 567, 656
GsuI CTGGAG 1 cut(s) 507
HaeIII GGCC 2 cut(s) 566, 583
HapII CCGG 1 cut(s) 19
Hin1II CATG 4 cut(s) 8, 209, 623, 655
HincII GTYRAC 1 cut(s) 502
HindII GTYRAC 1 cut(s) 502
HinfI GANTC 3 cut(s) 25, 77, 230
HpaII CCGG 1 cut(s) 19
HphI GGTGA 1 cut(s) 20
Hpy166II GTNNAC 2 cut(s) 40, 502
Hpy188I TCNGA 3 cut(s) 229, 348, 401
Hpy188III TCNNGA 2 cut(s) 50, 509
Hpy8I GTNNAC 2 cut(s) 40, 502
HpyCH4III ACNGT 7 cut(s) 159, 247, 265, 283, 375, 421, 594
HpyCH4V TGCA 5 cut(s) 4, 64, 239, 286, 371
HpyF10VI GCNNNNNNNGC 1 cut(s) 527
HpyF3I CTNAG 1 cut(s) 173
Hsp92II CATG 4 cut(s) 8, 209, 623, 655
Kzo9I GATC 2 cut(s) 131, 169
LmnI GCTCC 2 cut(s) 441, 526
LpnPI CCDG 9 cut(s) 20, 32, 120, 180, 272, 436, 494, 500, 537
MaeI CTAG 3 cut(s) 99, 117, 276
MaeIII GTNAC 2 cut(s) 208, 375
MalI GATC 2 cut(s) 133, 171
MboI GATC 2 cut(s) 131, 169
MboII GAAGA 8 cut(s) 20, 114, 341, 361, 403, 616, 644, 647
MhlI GDGCHC 1 cut(s) 668
MlsI TGGCCA 1 cut(s) 583
MluCI AATT 3 cut(s) 144, 254, 534
MluNI TGGCCA 1 cut(s) 583
MlyI GAGTC 3 cut(s) 19, 86, 239
MnlI CCTC 4 cut(s) 135, 306, 390, 701
Mox20I TGGCCA 1 cut(s) 583
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 2 cut(s) 342, 611
MscI TGGCCA 1 cut(s) 583
MseI TTAA 3 cut(s) 429, 537, 695
Msp20I TGGCCA 1 cut(s) 583
MspA1I CMGCKG 1 cut(s) 658
MspCI CTTAAG 1 cut(s) 428
MspI CCGG 1 cut(s) 19
MspR9I CCNGG 2 cut(s) 19, 20
Mva1269I GAATGC 1 cut(s) 613
MwoI GCNNNNNNNGC 1 cut(s) 527
NciI CCSGG 2 cut(s) 19, 20
NdeI CATATG 2 cut(s) 235, 574
NdeII GATC 2 cut(s) 131, 169
NlaIII CATG 4 cut(s) 8, 209, 623, 655
NmuCI GTSAC 1 cut(s) 208
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 655
PctI GAATGC 1 cut(s) 613
PdmI GAANNNNTTC 2 cut(s) 342, 611
PkrI GCNGC 2 cut(s) 568, 657
PleI GAGTC 3 cut(s) 19, 85, 238
PpsI GAGTC 3 cut(s) 19, 85, 238
PshBI ATTAAT 1 cut(s) 537
RsaI GTAC 1 cut(s) 455
RsaNI GTAC 1 cut(s) 454
SaqAI TTAA 3 cut(s) 429, 537, 695
SatI GCNGC 2 cut(s) 567, 656
Sau3AI GATC 2 cut(s) 131, 169
SchI GAGTC 3 cut(s) 19, 86, 239
ScrFI CCNGG 2 cut(s) 19, 20
SduI GDGCHC 1 cut(s) 668
SetI ASST 8 cut(s) 39, 109, 118, 169, 202, 224, 382, 455
SmaI CCCGGG 1 cut(s) 20
SmlI CTYRAG 2 cut(s) 381, 428
SmoI CTYRAG 2 cut(s) 381, 428
Sse9I AATT 3 cut(s) 144, 254, 534
SsiI CCGC 2 cut(s) 567, 656
SspMI CTAG 3 cut(s) 99, 117, 276
StyD4I CCNGG 2 cut(s) 17, 18
StyI CCWWGG 1 cut(s) 149
TaaI ACNGT 7 cut(s) 159, 247, 265, 283, 375, 421, 594
TasI AATT 3 cut(s) 144, 254, 534
TauI GCSGC 2 cut(s) 569, 658
Tru1I TTAA 3 cut(s) 429, 537, 695
Tru9I TTAA 3 cut(s) 429, 537, 695
TscAI CASTG 2 cut(s) 426, 531
TseFI GTSAC 1 cut(s) 208
Tsp45I GTSAC 1 cut(s) 208
TspDTI ATGAA 5 cut(s) 21, 78, 177, 338, 342
TspMI CCCGGG 1 cut(s) 18
TspRI CASTG 2 cut(s) 426, 531
Vha464I CTTAAG 1 cut(s) 428
VspI ATTAAT 1 cut(s) 537
XapI RAATTY 1 cut(s) 144
XceI RCATGY 1 cut(s) 655
XmaI CCCGGG 1 cut(s) 18
XmnI GAANNNNTTC 2 cut(s) 342, 611
XspI CTAG 3 cut(s) 99, 117, 276
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.