transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_2 | PF07727 | 63 - 128 | 2e-11 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 404 |
| AclWI | GGATC | 1 cut(s) | 315 |
| AfaI | GTAC | 1 cut(s) | 357 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 45 |
| AgsI | TTSAA | 2 cut(s) | 182, 314 |
| AjnI | CCWGG | 2 cut(s) | 108, 340 |
| AluBI | AGCT | 2 cut(s) | 100, 120 |
| AluI | AGCT | 2 cut(s) | 100, 120 |
| Alw21I | GWGCWC | 1 cut(s) | 122 |
| Alw26I | GTCTC | 4 cut(s) | 110, 152, 188, 270 |
| AlwI | GGATC | 1 cut(s) | 315 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 293 |
| AspLEI | GCGC | 1 cut(s) | 406 |
| BanII | GRGCYC | 1 cut(s) | 122 |
| BauI | CACGAG | 1 cut(s) | 351 |
| Bbv12I | GWGCWC | 1 cut(s) | 122 |
| BccI | CCATC | 1 cut(s) | 69 |
| BciT130I | CCWGG | 2 cut(s) | 110, 342 |
| BcoDI | GTCTC | 4 cut(s) | 110, 152, 188, 270 |
| BfaI | CTAG | 1 cut(s) | 101 |
| Bme1390I | CCNGG | 2 cut(s) | 110, 342 |
| BmrFI | CCNGG | 2 cut(s) | 110, 342 |
| BmsI | GCATC | 2 cut(s) | 19, 375 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 109, 141, 322, 354 |
| BpmI | CTGGAG | 1 cut(s) | 92 |
| BpuEI | CTTGAG | 1 cut(s) | 116 |
| BsaI | GGTCTC | 2 cut(s) | 110, 270 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 45 |
| BseBI | CCWGG | 2 cut(s) | 110, 342 |
| BseGI | GGATG | 2 cut(s) | 286, 346 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 45 |
| BseMII | CTCAG | 1 cut(s) | 147 |
| BseRI | GAGGAG | 1 cut(s) | 17 |
| BseYI | CCCAGC | 1 cut(s) | 39 |
| Bsh1236I | CGCG | 1 cut(s) | 404 |
| BsiHKAI | GWGCWC | 1 cut(s) | 122 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 45 |
| BsmAI | GTCTC | 4 cut(s) | 110, 152, 188, 270 |
| BsmI | GAATGC | 1 cut(s) | 295 |
| Bso31I | GGTCTC | 2 cut(s) | 110, 270 |
| Bsp1286I | GDGCHC | 1 cut(s) | 122 |
| Bsp1407I | TGTACA | 1 cut(s) | 355 |
| Bsp143I | GATC | 1 cut(s) | 307 |
| BspCNI | CTCAG | 1 cut(s) | 148 |
| BspFNI | CGCG | 1 cut(s) | 404 |
| BspPI | GGATC | 1 cut(s) | 315 |
| BspQI | GCTCTTC | 1 cut(s) | 127 |
| BspTNI | GGTCTC | 2 cut(s) | 110, 270 |
| BsrGI | TGTACA | 1 cut(s) | 355 |
| BssMI | GATC | 1 cut(s) | 307 |
| BssSI | CACGAG | 1 cut(s) | 351 |
| Bst2BI | CACGAG | 1 cut(s) | 351 |
| Bst2UI | CCWGG | 2 cut(s) | 110, 342 |
| Bst4CI | ACNGT | 1 cut(s) | 226 |
| Bst6I | CTCTTC | 1 cut(s) | 127 |
| BstAUI | TGTACA | 1 cut(s) | 355 |
| BstDEI | CTNAG | 2 cut(s) | 156, 167 |
| BstF5I | GGATG | 2 cut(s) | 286, 346 |
| BstFNI | CGCG | 1 cut(s) | 404 |
| BstHHI | GCGC | 1 cut(s) | 406 |
| BstKTI | GATC | 1 cut(s) | 310 |
| BstMAI | GTCTC | 4 cut(s) | 110, 152, 188, 270 |
| BstMBI | GATC | 1 cut(s) | 307 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 209, 401 |
| BstNI | CCWGG | 2 cut(s) | 110, 342 |
| BstSCI | CCNGG | 2 cut(s) | 108, 340 |
| BstUI | CGCG | 1 cut(s) | 404 |
| BstX2I | RGATCY | 1 cut(s) | 307 |
| BstYI | RGATCY | 1 cut(s) | 307 |
| BtsCI | GGATG | 2 cut(s) | 286, 346 |
| CfoI | GCGC | 1 cut(s) | 406 |
| Csp6I | GTAC | 1 cut(s) | 356 |
| CviJI | RGCY | 3 cut(s) | 100, 113, 120 |
| CviKI_1 | RGCY | 3 cut(s) | 100, 113, 120 |
| CviQI | GTAC | 1 cut(s) | 356 |
| DdeI | CTNAG | 2 cut(s) | 156, 167 |
| DpnI | GATC | 1 cut(s) | 309 |
| DpnII | GATC | 1 cut(s) | 307 |
| Eam1104I | CTCTTC | 1 cut(s) | 127 |
| EarI | CTCTTC | 1 cut(s) | 127 |
| Ecl136II | GAGCTC | 1 cut(s) | 120 |
| Eco24I | GRGCYC | 1 cut(s) | 122 |
| Eco31I | GGTCTC | 2 cut(s) | 110, 270 |
| Eco53kI | GAGCTC | 1 cut(s) | 120 |
| EcoICRI | GAGCTC | 1 cut(s) | 120 |
| EcoRII | CCWGG | 2 cut(s) | 108, 340 |
| EcoT38I | GRGCYC | 1 cut(s) | 122 |
| FaiI | YATR | 7 cut(s) | 80, 129, 207, 243, 251, 303, 327 |
| FokI | GGATG | 2 cut(s) | 293, 333 |
| FriOI | GRGCYC | 1 cut(s) | 122 |
| FspBI | CTAG | 1 cut(s) | 101 |
| GlaI | GCGC | 1 cut(s) | 405 |
| GsaI | CCCAGC | 1 cut(s) | 43 |
| GsuI | CTGGAG | 1 cut(s) | 92 |
| HhaI | GCGC | 1 cut(s) | 406 |
| Hin6I | GCGC | 1 cut(s) | 404 |
| HinP1I | GCGC | 1 cut(s) | 404 |
| HincII | GTYRAC | 1 cut(s) | 55 |
| HindII | GTYRAC | 1 cut(s) | 55 |
| HinfI | GANTC | 1 cut(s) | 148 |
| Hpy166II | GTNNAC | 3 cut(s) | 55, 356, 358 |
| Hpy188III | TCNNGA | 4 cut(s) | 65, 191, 286, 311 |
| Hpy8I | GTNNAC | 3 cut(s) | 55, 356, 358 |
| HpyAV | CCTTC | 1 cut(s) | 304 |
| HpyCH4III | ACNGT | 1 cut(s) | 226 |
| HpyCH4IV | ACGT | 1 cut(s) | 85 |
| HpyCH4V | TGCA | 2 cut(s) | 301, 395 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 209, 401 |
| HpyF3I | CTNAG | 2 cut(s) | 156, 167 |
| HpySE526I | ACGT | 1 cut(s) | 85 |
| HspAI | GCGC | 1 cut(s) | 404 |
| Kzo9I | GATC | 1 cut(s) | 307 |
| LguI | GCTCTTC | 1 cut(s) | 127 |
| LpnPI | CCDG | 5 cut(s) | 53, 95, 122, 327, 354 |
| LweI | GCATC | 2 cut(s) | 19, 375 |
| MaeI | CTAG | 1 cut(s) | 101 |
| MaeII | ACGT | 1 cut(s) | 85 |
| MaeIII | GTNAC | 1 cut(s) | 81 |
| MalI | GATC | 1 cut(s) | 309 |
| MboI | GATC | 1 cut(s) | 307 |
| MboII | GAAGA | 3 cut(s) | 114, 326, 329 |
| MflI | RGATCY | 1 cut(s) | 307 |
| MhlI | GDGCHC | 1 cut(s) | 122 |
| MluCI | AATT | 2 cut(s) | 379, 390 |
| MmeI | TCCRAC | 1 cut(s) | 346 |
| MnlI | CCTC | 3 cut(s) | 38, 348, 360 |
| MroXI | GAANNNNTTC | 1 cut(s) | 293 |
| MslI | CAYNNNNRTG | 1 cut(s) | 351 |
| MspR9I | CCNGG | 2 cut(s) | 110, 342 |
| Mva1269I | GAATGC | 1 cut(s) | 295 |
| MvaI | CCWGG | 2 cut(s) | 110, 342 |
| MvnI | CGCG | 1 cut(s) | 404 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 209, 401 |
| NdeII | GATC | 1 cut(s) | 307 |
| PciSI | GCTCTTC | 1 cut(s) | 127 |
| PctI | GAATGC | 1 cut(s) | 295 |
| PdmI | GAANNNNTTC | 1 cut(s) | 293 |
| PfeI | GAWTC | 1 cut(s) | 148 |
| Psp124BI | GAGCTC | 1 cut(s) | 122 |
| Psp6I | CCWGG | 2 cut(s) | 108, 340 |
| PspFI | CCCAGC | 1 cut(s) | 39 |
| PspGI | CCWGG | 2 cut(s) | 108, 340 |
| PsuI | RGATCY | 1 cut(s) | 307 |
| RsaI | GTAC | 1 cut(s) | 357 |
| RsaNI | GTAC | 1 cut(s) | 356 |
| RseI | CAYNNNNRTG | 1 cut(s) | 351 |
| SacI | GAGCTC | 1 cut(s) | 122 |
| SapI | GCTCTTC | 1 cut(s) | 127 |
| Sau3AI | GATC | 1 cut(s) | 307 |
| ScrFI | CCNGG | 2 cut(s) | 110, 342 |
| SduI | GDGCHC | 1 cut(s) | 122 |
| SetI | ASST | 6 cut(s) | 21, 88, 102, 106, 122, 340 |
| SfaNI | GCATC | 2 cut(s) | 19, 375 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 351 |
| SmlI | CTYRAG | 1 cut(s) | 95 |
| SmoI | CTYRAG | 1 cut(s) | 95 |
| Sse9I | AATT | 2 cut(s) | 379, 390 |
| SspMI | CTAG | 1 cut(s) | 101 |
| SstI | GAGCTC | 1 cut(s) | 122 |
| StyD4I | CCNGG | 2 cut(s) | 108, 340 |
| TaaI | ACNGT | 1 cut(s) | 226 |
| TaiI | ACGT | 1 cut(s) | 88 |
| TaqI | TCGA | 1 cut(s) | 285 |
| TasI | AATT | 2 cut(s) | 379, 390 |
| TatI | WGTACW | 1 cut(s) | 355 |
| TfiI | GAWTC | 1 cut(s) | 148 |
| TspDTI | ATGAA | 2 cut(s) | 233, 266 |
| XmnI | GAANNNNTTC | 1 cut(s) | 293 |
| XspI | CTAG | 1 cut(s) | 101 |