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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 507 |
| AccII | CGCG | 1 cut(s) | 234 |
| AciI | CCGC | 2 cut(s) | 137, 505 |
| AcvI | CACGTG | 1 cut(s) | 475 |
| AfaI | GTAC | 2 cut(s) | 248, 291 |
| AfeI | AGCGCT | 1 cut(s) | 158 |
| AjnI | CCWGG | 1 cut(s) | 99 |
| AluBI | AGCT | 5 cut(s) | 39, 185, 376, 383, 436 |
| AluI | AGCT | 5 cut(s) | 39, 185, 376, 383, 436 |
| Alw21I | GWGCWC | 1 cut(s) | 531 |
| Alw26I | GTCTC | 2 cut(s) | 116, 531 |
| Ama87I | CYCGRG | 1 cut(s) | 28 |
| Aor51HI | AGCGCT | 1 cut(s) | 158 |
| ApeKI | GCWGC | 2 cut(s) | 433, 436 |
| AspLEI | GCGC | 1 cut(s) | 159 |
| AspS9I | GGNCC | 2 cut(s) | 23, 284 |
| AsuC2I | CCSGG | 2 cut(s) | 29, 30 |
| AsuNHI | GCTAGC | 1 cut(s) | 185 |
| AvaI | CYCGRG | 1 cut(s) | 28 |
| AvaII | GGWCC | 2 cut(s) | 23, 284 |
| BbrPI | CACGTG | 1 cut(s) | 475 |
| Bbv12I | GWGCWC | 1 cut(s) | 531 |
| BbvI | GCAGC | 2 cut(s) | 423, 445 |
| BciT130I | CCWGG | 1 cut(s) | 101 |
| BcnI | CCSGG | 2 cut(s) | 29, 30 |
| BcoDI | GTCTC | 2 cut(s) | 116, 531 |
| BfaI | CTAG | 5 cut(s) | 186, 386, 518, 545, 553 |
| BfoI | RGCGCY | 1 cut(s) | 160 |
| BisI | GCNGC | 2 cut(s) | 434, 437 |
| BlsI | GCNGC | 2 cut(s) | 435, 438 |
| Bme1390I | CCNGG | 3 cut(s) | 29, 30, 101 |
| Bme18I | GGWCC | 2 cut(s) | 23, 284 |
| BmeT110I | CYCGRG | 1 cut(s) | 28 |
| BmgT120I | GGNCC | 2 cut(s) | 23, 284 |
| BmiI | GGNNCC | 1 cut(s) | 25 |
| BmrFI | CCNGG | 3 cut(s) | 29, 30, 101 |
| BmtI | GCTAGC | 1 cut(s) | 189 |
| BpuEI | CTTGAG | 1 cut(s) | 517 |
| BpuMI | CCSGG | 2 cut(s) | 29, 30 |
| BsaAI | YACGTR | 1 cut(s) | 475 |
| BsaBI | GATNNNNATC | 1 cut(s) | 174 |
| BsaJI | CCNNGG | 2 cut(s) | 27, 28 |
| BsaWI | WCCGGW | 1 cut(s) | 427 |
| Bse3DI | GCAATG | 1 cut(s) | 57 |
| Bse8I | GATNNNNATC | 1 cut(s) | 174 |
| BseBI | CCWGG | 1 cut(s) | 101 |
| BseDI | CCNNGG | 2 cut(s) | 27, 28 |
| BseGI | GGATG | 1 cut(s) | 64 |
| BseJI | GATNNNNATC | 1 cut(s) | 174 |
| BseMI | GCAATG | 1 cut(s) | 57 |
| BseMII | CTCAG | 1 cut(s) | 186 |
| BseRI | GAGGAG | 1 cut(s) | 311 |
| BseXI | GCAGC | 2 cut(s) | 423, 445 |
| Bsh1236I | CGCG | 1 cut(s) | 234 |
| Bsh1285I | CGRYCG | 1 cut(s) | 141 |
| BsiEI | CGRYCG | 1 cut(s) | 141 |
| BsiHKAI | GWGCWC | 1 cut(s) | 531 |
| BsiHKCI | CYCGRG | 1 cut(s) | 28 |
| BsiSI | CCGG | 3 cut(s) | 29, 282, 428 |
| BsmAI | GTCTC | 2 cut(s) | 116, 531 |
| BsoBI | CYCGRG | 1 cut(s) | 28 |
| Bsp1286I | GDGCHC | 1 cut(s) | 531 |
| Bsp1407I | TGTACA | 1 cut(s) | 246 |
| Bsp143I | GATC | 3 cut(s) | 169, 318, 333 |
| Bsp68I | TCGCGA | 1 cut(s) | 234 |
| BspACI | CCGC | 2 cut(s) | 137, 505 |
| BspCNI | CTCAG | 1 cut(s) | 187 |
| BspFNI | CGCG | 1 cut(s) | 234 |
| BspLI | GGNNCC | 1 cut(s) | 25 |
| BspOI | GCTAGC | 1 cut(s) | 189 |
| BsrBI | CCGCTC | 1 cut(s) | 507 |
| BsrDI | GCAATG | 1 cut(s) | 57 |
| BsrGI | TGTACA | 1 cut(s) | 246 |
| BssECI | CCNNGG | 2 cut(s) | 27, 28 |
| BssMI | GATC | 3 cut(s) | 169, 318, 333 |
| Bst2UI | CCWGG | 1 cut(s) | 101 |
| Bst4CI | ACNGT | 3 cut(s) | 313, 448, 542 |
| Bst6I | CTCTTC | 1 cut(s) | 344 |
| BstAUI | TGTACA | 1 cut(s) | 246 |
| BstBAI | YACGTR | 1 cut(s) | 475 |
| BstC8I | GCNNGC | 4 cut(s) | 183, 187, 210, 509 |
| BstDEI | CTNAG | 2 cut(s) | 195, 330 |
| BstF5I | GGATG | 1 cut(s) | 64 |
| BstFNI | CGCG | 1 cut(s) | 234 |
| BstH2I | RGCGCY | 1 cut(s) | 160 |
| BstHHI | GCGC | 1 cut(s) | 159 |
| BstKTI | GATC | 3 cut(s) | 172, 321, 336 |
| BstMAI | GTCTC | 2 cut(s) | 116, 531 |
| BstMBI | GATC | 3 cut(s) | 169, 318, 333 |
| BstMCI | CGRYCG | 1 cut(s) | 141 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 134, 143, 163 |
| BstNI | CCWGG | 1 cut(s) | 101 |
| BstNSI | RCATGY | 1 cut(s) | 346 |
| BstSCI | CCNGG | 3 cut(s) | 27, 28, 99 |
| BstUI | CGCG | 1 cut(s) | 234 |
| BstV1I | GCAGC | 2 cut(s) | 423, 445 |
| BtsCI | GGATG | 1 cut(s) | 64 |
| BtsIMutI | CAGTG | 1 cut(s) | 453 |
| BtuMI | TCGCGA | 1 cut(s) | 234 |
| Cac8I | GCNNGC | 4 cut(s) | 183, 187, 210, 509 |
| CfoI | GCGC | 1 cut(s) | 159 |
| Cfr13I | GGNCC | 2 cut(s) | 23, 284 |
| Cfr9I | CCCGGG | 1 cut(s) | 28 |
| Csp6I | GTAC | 2 cut(s) | 247, 290 |
| CviAII | CATG | 2 cut(s) | 44, 343 |
| CviJI | RGCY | 9 cut(s) | 39, 181, 185, 189, 281, 324, 376, 383, 436 |
| CviKI_1 | RGCY | 9 cut(s) | 39, 181, 185, 189, 281, 324, 376, 383, 436 |
| CviQI | GTAC | 2 cut(s) | 247, 290 |
| DdeI | CTNAG | 2 cut(s) | 195, 330 |
| DpnI | GATC | 3 cut(s) | 171, 320, 335 |
| DpnII | GATC | 3 cut(s) | 169, 318, 333 |
| Eam1104I | CTCTTC | 1 cut(s) | 344 |
| EarI | CTCTTC | 1 cut(s) | 344 |
| Eco47I | GGWCC | 2 cut(s) | 23, 284 |
| Eco47III | AGCGCT | 1 cut(s) | 158 |
| Eco72I | CACGTG | 1 cut(s) | 475 |
| Eco88I | CYCGRG | 1 cut(s) | 28 |
| EcoO109I | RGGNCCY | 1 cut(s) | 23 |
| EcoRII | CCWGG | 1 cut(s) | 99 |
| FaeI | CATG | 2 cut(s) | 47, 346 |
| FaiI | YATR | 6 cut(s) | 15, 45, 327, 344, 357, 455 |
| FatI | CATG | 2 cut(s) | 43, 342 |
| Fnu4HI | GCNGC | 2 cut(s) | 434, 437 |
| FokI | GGATG | 1 cut(s) | 71 |
| Fsp4HI | GCNGC | 2 cut(s) | 434, 437 |
| FspBI | CTAG | 5 cut(s) | 186, 386, 518, 545, 553 |
| GlaI | GCGC | 1 cut(s) | 158 |
| GluI | GCNGC | 2 cut(s) | 434, 437 |
| HaeII | RGCGCY | 1 cut(s) | 160 |
| HapII | CCGG | 3 cut(s) | 29, 282, 428 |
| HhaI | GCGC | 1 cut(s) | 159 |
| Hin1II | CATG | 2 cut(s) | 47, 346 |
| Hin6I | GCGC | 1 cut(s) | 157 |
| HinP1I | GCGC | 1 cut(s) | 157 |
| HinfI | GANTC | 4 cut(s) | 96, 197, 222, 236 |
| HpaII | CCGG | 3 cut(s) | 29, 282, 428 |
| Hpy188III | TCNNGA | 5 cut(s) | 67, 233, 337, 386, 534 |
| Hpy99I | CGWCG | 1 cut(s) | 166 |
| HpyAV | CCTTC | 1 cut(s) | 142 |
| HpyCH4III | ACNGT | 3 cut(s) | 313, 448, 542 |
| HpyCH4IV | ACGT | 1 cut(s) | 474 |
| HpyCH4V | TGCA | 4 cut(s) | 81, 260, 346, 439 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 134, 143, 163 |
| HpyF3I | CTNAG | 2 cut(s) | 195, 330 |
| HpySE526I | ACGT | 1 cut(s) | 474 |
| Hsp92II | CATG | 2 cut(s) | 47, 346 |
| HspAI | GCGC | 1 cut(s) | 157 |
| Kzo9I | GATC | 3 cut(s) | 169, 318, 333 |
| LmnI | GCTCC | 1 cut(s) | 430 |
| Lsp1109I | GCAGC | 2 cut(s) | 423, 445 |
| MaeI | CTAG | 5 cut(s) | 186, 386, 518, 545, 553 |
| MaeII | ACGT | 1 cut(s) | 474 |
| MalI | GATC | 3 cut(s) | 171, 320, 335 |
| MbiI | CCGCTC | 1 cut(s) | 507 |
| MboI | GATC | 3 cut(s) | 169, 318, 333 |
| MboII | GAAGA | 5 cut(s) | 17, 82, 85, 361, 422 |
| MhlI | GDGCHC | 1 cut(s) | 531 |
| MlyI | GAGTC | 1 cut(s) | 206 |
| MmeI | TCCRAC | 1 cut(s) | 199 |
| MnlI | CCTC | 4 cut(s) | 208, 289, 345, 524 |
| MseI | TTAA | 5 cut(s) | 203, 402, 416, 465, 482 |
| MspA1I | CMGCKG | 1 cut(s) | 436 |
| MspI | CCGG | 3 cut(s) | 29, 282, 428 |
| MspR9I | CCNGG | 3 cut(s) | 29, 30, 101 |
| MvaI | CCWGG | 1 cut(s) | 101 |
| MvnI | CGCG | 1 cut(s) | 234 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 134, 143, 163 |
| NciI | CCSGG | 2 cut(s) | 29, 30 |
| NdeII | GATC | 3 cut(s) | 169, 318, 333 |
| NheI | GCTAGC | 1 cut(s) | 185 |
| NlaIII | CATG | 2 cut(s) | 47, 346 |
| NlaIV | GGNNCC | 1 cut(s) | 25 |
| NruI | TCGCGA | 1 cut(s) | 234 |
| NspI | RCATGY | 1 cut(s) | 346 |
| PfeI | GAWTC | 3 cut(s) | 96, 222, 236 |
| PkrI | GCNGC | 2 cut(s) | 435, 438 |
| PleI | GAGTC | 1 cut(s) | 205 |
| PmaCI | CACGTG | 1 cut(s) | 475 |
| PmlI | CACGTG | 1 cut(s) | 475 |
| PpsI | GAGTC | 1 cut(s) | 205 |
| Ppu21I | YACGTR | 1 cut(s) | 475 |
| PpuMI | RGGWCCY | 1 cut(s) | 23 |
| Psp5II | RGGWCCY | 1 cut(s) | 23 |
| Psp6I | CCWGG | 1 cut(s) | 99 |
| PspCI | CACGTG | 1 cut(s) | 475 |
| PspGI | CCWGG | 1 cut(s) | 99 |
| PspN4I | GGNNCC | 1 cut(s) | 25 |
| PspPI | GGNCC | 2 cut(s) | 23, 284 |
| PspPPI | RGGWCCY | 1 cut(s) | 23 |
| PvuII | CAGCTG | 1 cut(s) | 436 |
| RruI | TCGCGA | 1 cut(s) | 234 |
| RsaI | GTAC | 2 cut(s) | 248, 291 |
| RsaNI | GTAC | 2 cut(s) | 247, 290 |
| SaqAI | TTAA | 5 cut(s) | 203, 402, 416, 465, 482 |
| SatI | GCNGC | 2 cut(s) | 434, 437 |
| Sau3AI | GATC | 3 cut(s) | 169, 318, 333 |
| Sau96I | GGNCC | 2 cut(s) | 23, 284 |
| SchI | GAGTC | 1 cut(s) | 206 |
| ScrFI | CCNGG | 3 cut(s) | 29, 30, 101 |
| SduI | GDGCHC | 1 cut(s) | 531 |
| SinI | GGWCC | 2 cut(s) | 23, 284 |
| SmaI | CCCGGG | 1 cut(s) | 30 |
| SmlI | CTYRAG | 1 cut(s) | 532 |
| SmoI | CTYRAG | 1 cut(s) | 532 |
| SsiI | CCGC | 2 cut(s) | 137, 505 |
| SspMI | CTAG | 5 cut(s) | 186, 386, 518, 545, 553 |
| StyD4I | CCNGG | 3 cut(s) | 27, 28, 99 |
| TaaI | ACNGT | 3 cut(s) | 313, 448, 542 |
| TaiI | ACGT | 1 cut(s) | 477 |
| TaqI | TCGA | 2 cut(s) | 87, 141 |
| TatI | WGTACW | 1 cut(s) | 246 |
| TfiI | GAWTC | 3 cut(s) | 96, 222, 236 |
| Tru1I | TTAA | 5 cut(s) | 203, 402, 416, 465, 482 |
| Tru9I | TTAA | 5 cut(s) | 203, 402, 416, 465, 482 |
| TscAI | CASTG | 1 cut(s) | 453 |
| TseI | GCWGC | 2 cut(s) | 433, 436 |
| TspDTI | ATGAA | 1 cut(s) | 32 |
| TspMI | CCCGGG | 1 cut(s) | 28 |
| TspRI | CASTG | 1 cut(s) | 453 |
| VpaK11BI | GGWCC | 2 cut(s) | 23, 284 |
| XbaI | TCTAGA | 1 cut(s) | 385 |
| XceI | RCATGY | 1 cut(s) | 346 |
| XmaI | CCCGGG | 1 cut(s) | 28 |
| XspI | CTAG | 5 cut(s) | 186, 386, 518, 545, 553 |