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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 507 |
| AccBSI | CCGCTC | 1 cut(s) | 92 |
| AccII | CGCG | 2 cut(s) | 61, 82 |
| AciI | CCGC | 5 cut(s) | 59, 92, 114, 230, 407 |
| AfaI | GTAC | 1 cut(s) | 361 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 507 |
| AflIII | ACRYGT | 1 cut(s) | 107 |
| AgsI | TTSAA | 3 cut(s) | 17, 50, 289 |
| AluBI | AGCT | 5 cut(s) | 38, 86, 177, 326, 429 |
| AluI | AGCT | 5 cut(s) | 38, 86, 177, 326, 429 |
| AoxI | GGCC | 3 cut(s) | 401, 530, 587 |
| ApaI | GGGCCC | 1 cut(s) | 591 |
| ApeKI | GCWGC | 2 cut(s) | 38, 326 |
| AspA2I | CCTAGG | 2 cut(s) | 398, 583 |
| AspLEI | GCGC | 2 cut(s) | 97, 482 |
| AspS9I | GGNCC | 5 cut(s) | 224, 531, 587, 588, 613 |
| AsuHPI | GGTGA | 2 cut(s) | 310, 421 |
| AsuII | TTCGAA | 1 cut(s) | 418 |
| AvaII | GGWCC | 2 cut(s) | 224, 613 |
| AvrII | CCTAGG | 2 cut(s) | 398, 583 |
| BaeGI | GKGCMC | 1 cut(s) | 591 |
| BanII | GRGCYC | 1 cut(s) | 591 |
| BbvI | GCAGC | 2 cut(s) | 25, 313 |
| BccI | CCATC | 2 cut(s) | 295, 592 |
| BceAI | ACGGC | 1 cut(s) | 478 |
| BclI | TGATCA | 1 cut(s) | 567 |
| BfaI | CTAG | 3 cut(s) | 87, 399, 584 |
| BfmI | CTRYAG | 1 cut(s) | 166 |
| BisI | GCNGC | 3 cut(s) | 39, 93, 327 |
| BlnI | CCTAGG | 2 cut(s) | 398, 583 |
| BlsI | GCNGC | 3 cut(s) | 40, 94, 328 |
| Bme18I | GGWCC | 2 cut(s) | 224, 613 |
| BmgT120I | GGNCC | 5 cut(s) | 224, 531, 587, 588, 613 |
| BmiI | GGNNCC | 4 cut(s) | 57, 118, 589, 614 |
| BmsI | GCATC | 4 cut(s) | 77, 241, 249, 384 |
| Bpu14I | TTCGAA | 1 cut(s) | 418 |
| BsaAI | YACGTR | 1 cut(s) | 541 |
| BsaJI | CCNNGG | 3 cut(s) | 381, 398, 583 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 507 |
| Bse118I | RCCGGY | 2 cut(s) | 356, 573 |
| Bse3DI | GCAATG | 1 cut(s) | 157 |
| BseDI | CCNNGG | 3 cut(s) | 381, 398, 583 |
| BseGI | GGATG | 1 cut(s) | 603 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 507 |
| BseMI | GCAATG | 1 cut(s) | 157 |
| BseRI | GAGGAG | 4 cut(s) | 509, 512, 515, 575 |
| BseSI | GKGCMC | 1 cut(s) | 591 |
| BseXI | GCAGC | 2 cut(s) | 25, 313 |
| Bsh1236I | CGCG | 2 cut(s) | 61, 82 |
| Bsh1285I | CGRYCG | 1 cut(s) | 469 |
| BshFI | GGCC | 3 cut(s) | 403, 532, 589 |
| BsiEI | CGRYCG | 1 cut(s) | 469 |
| BsiSI | CCGG | 4 cut(s) | 330, 357, 529, 574 |
| BslFI | GGGAC | 2 cut(s) | 473, 626 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 507 |
| BsmFI | GGGAC | 2 cut(s) | 473, 626 |
| BsmI | GAATGC | 1 cut(s) | 208 |
| BsnI | GGCC | 3 cut(s) | 403, 532, 589 |
| Bsp119I | TTCGAA | 1 cut(s) | 418 |
| Bsp120I | GGGCCC | 1 cut(s) | 587 |
| Bsp1286I | GDGCHC | 1 cut(s) | 591 |
| Bsp143I | GATC | 2 cut(s) | 466, 567 |
| BspACI | CCGC | 5 cut(s) | 59, 92, 114, 230, 407 |
| BspANI | GGCC | 3 cut(s) | 403, 532, 589 |
| BspFNI | CGCG | 2 cut(s) | 61, 82 |
| BspLI | GGNNCC | 4 cut(s) | 57, 118, 589, 614 |
| BspT104I | TTCGAA | 1 cut(s) | 418 |
| BsrBI | CCGCTC | 1 cut(s) | 92 |
| BsrDI | GCAATG | 1 cut(s) | 157 |
| BsrFI | RCCGGY | 2 cut(s) | 356, 573 |
| BssAI | RCCGGY | 2 cut(s) | 356, 573 |
| BssECI | CCNNGG | 3 cut(s) | 381, 398, 583 |
| BssMI | GATC | 2 cut(s) | 466, 567 |
| BssT1I | CCWWGG | 3 cut(s) | 381, 398, 583 |
| Bst4CI | ACNGT | 2 cut(s) | 217, 298 |
| Bst6I | CTCTTC | 2 cut(s) | 420, 546 |
| BstBAI | YACGTR | 1 cut(s) | 541 |
| BstBI | TTCGAA | 1 cut(s) | 418 |
| BstC8I | GCNNGC | 5 cut(s) | 84, 175, 405, 498, 575 |
| BstF5I | GGATG | 1 cut(s) | 603 |
| BstFNI | CGCG | 2 cut(s) | 61, 82 |
| BstHHI | GCGC | 2 cut(s) | 97, 482 |
| BstKTI | GATC | 2 cut(s) | 469, 570 |
| BstMBI | GATC | 2 cut(s) | 466, 567 |
| BstMCI | CGRYCG | 1 cut(s) | 469 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 92, 156 |
| BstNSI | RCATGY | 2 cut(s) | 111, 450 |
| BstSFI | CTRYAG | 1 cut(s) | 166 |
| BstSLI | GKGCMC | 1 cut(s) | 591 |
| BstSNI | TACGTA | 1 cut(s) | 541 |
| BstUI | CGCG | 2 cut(s) | 61, 82 |
| BstV1I | GCAGC | 2 cut(s) | 25, 313 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 598 |
| BsuRI | GGCC | 3 cut(s) | 403, 532, 589 |
| BtsCI | GGATG | 1 cut(s) | 603 |
| BtsIMutI | CAGTG | 1 cut(s) | 222 |
| Cac8I | GCNNGC | 5 cut(s) | 84, 175, 405, 498, 575 |
| CfoI | GCGC | 2 cut(s) | 97, 482 |
| Cfr10I | RCCGGY | 2 cut(s) | 356, 573 |
| Cfr13I | GGNCC | 5 cut(s) | 224, 531, 587, 588, 613 |
| CseI | GACGC | 1 cut(s) | 200 |
| Csp6I | GTAC | 1 cut(s) | 360 |
| CviAII | CATG | 3 cut(s) | 108, 162, 447 |
| CviQI | GTAC | 1 cut(s) | 360 |
| DpnI | GATC | 2 cut(s) | 468, 569 |
| DpnII | GATC | 2 cut(s) | 466, 567 |
| Eam1104I | CTCTTC | 2 cut(s) | 420, 546 |
| EarI | CTCTTC | 2 cut(s) | 420, 546 |
| Eco105I | TACGTA | 1 cut(s) | 541 |
| Eco130I | CCWWGG | 3 cut(s) | 381, 398, 583 |
| Eco24I | GRGCYC | 1 cut(s) | 591 |
| Eco47I | GGWCC | 2 cut(s) | 224, 613 |
| EcoO109I | RGGNCCY | 2 cut(s) | 587, 613 |
| EcoT14I | CCWWGG | 3 cut(s) | 381, 398, 583 |
| EcoT38I | GRGCYC | 1 cut(s) | 591 |
| ErhI | CCWWGG | 3 cut(s) | 381, 398, 583 |
| FaeI | CATG | 3 cut(s) | 111, 165, 450 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 469, 501 |
| FaqI | GGGAC | 2 cut(s) | 473, 626 |
| FatI | CATG | 3 cut(s) | 107, 161, 446 |
| FbaI | TGATCA | 1 cut(s) | 567 |
| Fnu4HI | GCNGC | 3 cut(s) | 39, 93, 327 |
| FokI | GGATG | 1 cut(s) | 610 |
| FriOI | GRGCYC | 1 cut(s) | 591 |
| Fsp4HI | GCNGC | 3 cut(s) | 39, 93, 327 |
| FspBI | CTAG | 3 cut(s) | 87, 399, 584 |
| GlaI | GCGC | 2 cut(s) | 96, 481 |
| GluI | GCNGC | 3 cut(s) | 39, 93, 327 |
| HaeIII | GGCC | 3 cut(s) | 403, 532, 589 |
| HapII | CCGG | 4 cut(s) | 330, 357, 529, 574 |
| HgaI | GACGC | 1 cut(s) | 200 |
| HhaI | GCGC | 2 cut(s) | 97, 482 |
| Hin1II | CATG | 3 cut(s) | 111, 165, 450 |
| Hin6I | GCGC | 2 cut(s) | 95, 480 |
| HinP1I | GCGC | 2 cut(s) | 95, 480 |
| HinfI | GANTC | 2 cut(s) | 271, 412 |
| HpaII | CCGG | 4 cut(s) | 330, 357, 529, 574 |
| HphI | GGTGA | 2 cut(s) | 310, 421 |
| Hpy166II | GTNNAC | 2 cut(s) | 220, 473 |
| Hpy188I | TCNGA | 3 cut(s) | 245, 270, 366 |
| Hpy188III | TCNNGA | 1 cut(s) | 141 |
| Hpy8I | GTNNAC | 2 cut(s) | 220, 473 |
| Hpy99I | CGWCG | 3 cut(s) | 191, 194, 298 |
| HpyAV | CCTTC | 3 cut(s) | 149, 450, 632 |
| HpyCH4III | ACNGT | 2 cut(s) | 217, 298 |
| HpyCH4IV | ACGT | 1 cut(s) | 540 |
| HpyCH4V | TGCA | 2 cut(s) | 446, 490 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 92, 156 |
| HpySE526I | ACGT | 1 cut(s) | 540 |
| Hsp92II | CATG | 3 cut(s) | 111, 165, 450 |
| HspAI | GCGC | 2 cut(s) | 95, 480 |
| KroI | GCCGGC | 1 cut(s) | 573 |
| KroNI | GCCGGC | 1 cut(s) | 575 |
| Ksp22I | TGATCA | 1 cut(s) | 567 |
| Kzo9I | GATC | 2 cut(s) | 466, 567 |
| LmnI | GCTCC | 1 cut(s) | 304 |
| LpnPI | CCDG | 6 cut(s) | 343, 370, 417, 439, 542, 587 |
| Lsp1109I | GCAGC | 2 cut(s) | 25, 313 |
| LweI | GCATC | 4 cut(s) | 77, 241, 249, 384 |
| MaeI | CTAG | 3 cut(s) | 87, 399, 584 |
| MaeII | ACGT | 1 cut(s) | 540 |
| MaeIII | GTNAC | 1 cut(s) | 409 |
| MalI | GATC | 2 cut(s) | 468, 569 |
| MbiI | CCGCTC | 1 cut(s) | 92 |
| MboI | GATC | 2 cut(s) | 466, 567 |
| MboII | GAAGA | 4 cut(s) | 43, 407, 432, 563 |
| MhlI | GDGCHC | 1 cut(s) | 591 |
| MlyI | GAGTC | 2 cut(s) | 265, 406 |
| MmeI | TCCRAC | 1 cut(s) | 293 |
| MnlI | CCTC | 8 cut(s) | 220, 527, 530, 533, 536, 547, 553, 603 |
| MroNI | GCCGGC | 1 cut(s) | 573 |
| MseI | TTAA | 1 cut(s) | 369 |
| MspA1I | CMGCKG | 1 cut(s) | 407 |
| MspI | CCGG | 4 cut(s) | 330, 357, 529, 574 |
| Mva1269I | GAATGC | 1 cut(s) | 208 |
| MvnI | CGCG | 2 cut(s) | 61, 82 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 92, 156 |
| NaeI | GCCGGC | 1 cut(s) | 575 |
| NdeII | GATC | 2 cut(s) | 466, 567 |
| NgoMIV | GCCGGC | 1 cut(s) | 573 |
| NlaIII | CATG | 3 cut(s) | 111, 165, 450 |
| NlaIV | GGNNCC | 4 cut(s) | 57, 118, 589, 614 |
| NmuCI | GTSAC | 1 cut(s) | 409 |
| NspI | RCATGY | 2 cut(s) | 111, 450 |
| NspV | TTCGAA | 1 cut(s) | 418 |
| PciI | ACATGT | 1 cut(s) | 107 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 290 |
| PctI | GAATGC | 1 cut(s) | 208 |
| PdiI | GCCGGC | 1 cut(s) | 575 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 507 |
| PkrI | GCNGC | 3 cut(s) | 40, 94, 328 |
| Ple19I | CGATCG | 1 cut(s) | 469 |
| PleI | GAGTC | 2 cut(s) | 265, 406 |
| PpsI | GAGTC | 2 cut(s) | 265, 406 |
| Ppu21I | YACGTR | 1 cut(s) | 541 |
| PpuMI | RGGWCCY | 1 cut(s) | 613 |
| PscI | ACATGT | 1 cut(s) | 107 |
| Psp5II | RGGWCCY | 1 cut(s) | 613 |
| PspN4I | GGNNCC | 4 cut(s) | 57, 118, 589, 614 |
| PspOMI | GGGCCC | 1 cut(s) | 587 |
| PspPI | GGNCC | 5 cut(s) | 224, 531, 587, 588, 613 |
| PspPPI | RGGWCCY | 1 cut(s) | 613 |
| PvuI | CGATCG | 1 cut(s) | 469 |
| RsaI | GTAC | 1 cut(s) | 361 |
| RsaNI | GTAC | 1 cut(s) | 360 |
| SaqAI | TTAA | 1 cut(s) | 369 |
| SatI | GCNGC | 3 cut(s) | 39, 93, 327 |
| Sau3AI | GATC | 2 cut(s) | 466, 567 |
| Sau96I | GGNCC | 5 cut(s) | 224, 531, 587, 588, 613 |
| SchI | GAGTC | 2 cut(s) | 265, 406 |
| SduI | GDGCHC | 1 cut(s) | 591 |
| SfaNI | GCATC | 4 cut(s) | 77, 241, 249, 384 |
| SfcI | CTRYAG | 1 cut(s) | 166 |
| SfuI | TTCGAA | 1 cut(s) | 418 |
| SinI | GGWCC | 2 cut(s) | 224, 613 |
| SnaBI | TACGTA | 1 cut(s) | 541 |
| SsiI | CCGC | 5 cut(s) | 59, 92, 114, 230, 407 |
| SspI | AATATT | 1 cut(s) | 13 |
| SspMI | CTAG | 3 cut(s) | 87, 399, 584 |
| StyI | CCWWGG | 3 cut(s) | 381, 398, 583 |
| TaaI | ACNGT | 2 cut(s) | 217, 298 |
| TaiI | ACGT | 1 cut(s) | 543 |
| TaqI | TCGA | 5 cut(s) | 140, 186, 212, 235, 418 |
| TauI | GCSGC | 1 cut(s) | 95 |
| Tru1I | TTAA | 1 cut(s) | 369 |
| Tru9I | TTAA | 1 cut(s) | 369 |
| TscAI | CASTG | 1 cut(s) | 222 |
| TseFI | GTSAC | 1 cut(s) | 409 |
| TseI | GCWGC | 2 cut(s) | 38, 326 |
| Tsp45I | GTSAC | 1 cut(s) | 409 |
| TspDTI | ATGAA | 1 cut(s) | 168 |
| TspGWI | ACGGA | 1 cut(s) | 237 |
| TspRI | CASTG | 1 cut(s) | 222 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 507 |
| VpaK11BI | GGWCC | 2 cut(s) | 224, 613 |
| XceI | RCATGY | 2 cut(s) | 111, 450 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 214 |
| XmaJI | CCTAGG | 2 cut(s) | 398, 583 |
| XspI | CTAG | 3 cut(s) | 87, 399, 584 |