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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 5 cut(s) | 200, 302, 359, 580, 776 |
| AciI | CCGC | 6 cut(s) | 82, 357, 578, 653, 774, 776 |
| AclWI | GGATC | 2 cut(s) | 116, 408 |
| AcoI | YGGCCR | 1 cut(s) | 777 |
| AcsI | RAATTY | 1 cut(s) | 223 |
| AcuI | CTGAAG | 1 cut(s) | 195 |
| AfaI | GTAC | 1 cut(s) | 108 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 88, 142, 397 |
| AgsI | TTSAA | 3 cut(s) | 228, 757, 766 |
| AjnI | CCWGG | 3 cut(s) | 70, 156, 471 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 281, 313 |
| AluBI | AGCT | 5 cut(s) | 9, 95, 173, 406, 539 |
| AluI | AGCT | 5 cut(s) | 9, 95, 173, 406, 539 |
| Alw26I | GTCTC | 2 cut(s) | 23, 822 |
| AlwI | GGATC | 2 cut(s) | 116, 408 |
| AoxI | GGCC | 3 cut(s) | 382, 443, 777 |
| ApeKI | GCWGC | 3 cut(s) | 92, 597, 770 |
| ApoI | RAATTY | 1 cut(s) | 223 |
| AspLEI | GCGC | 1 cut(s) | 202 |
| AspS9I | GGNCC | 3 cut(s) | 383, 444, 568 |
| AsuHPI | GGTGA | 7 cut(s) | 125, 173, 277, 379, 552, 663, 717 |
| AvaII | GGWCC | 1 cut(s) | 568 |
| BbsI | GAAGAC | 1 cut(s) | 187 |
| BbvI | GCAGC | 3 cut(s) | 104, 609, 782 |
| BccI | CCATC | 5 cut(s) | 144, 358, 554, 682, 739 |
| BciT130I | CCWGG | 3 cut(s) | 72, 158, 473 |
| BciVI | GTATCC | 1 cut(s) | 95 |
| BcoDI | GTCTC | 2 cut(s) | 23, 822 |
| BfaI | CTAG | 3 cut(s) | 39, 203, 696 |
| BfuI | GTATCC | 1 cut(s) | 95 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 326 |
| BisI | GCNGC | 6 cut(s) | 93, 357, 598, 771, 774, 777 |
| BlpI | GCTNAGC | 1 cut(s) | 540 |
| BlsI | GCNGC | 6 cut(s) | 94, 358, 599, 772, 775, 778 |
| Bme1390I | CCNGG | 3 cut(s) | 72, 158, 473 |
| Bme18I | GGWCC | 1 cut(s) | 568 |
| BmgT120I | GGNCC | 3 cut(s) | 383, 444, 568 |
| BmiI | GGNNCC | 3 cut(s) | 258, 570, 646 |
| BmrFI | CCNGG | 3 cut(s) | 72, 158, 473 |
| BmsI | GCATC | 5 cut(s) | 25, 25, 307, 572, 609 |
| BpiI | GAAGAC | 1 cut(s) | 187 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 540 |
| BpuEI | CTTGAG | 2 cut(s) | 218, 254 |
| BsaAI | YACGTR | 1 cut(s) | 106 |
| BsaJI | CCNNGG | 4 cut(s) | 71, 157, 471, 774 |
| BsaWI | WCCGGW | 1 cut(s) | 397 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 88, 142, 397 |
| Bse1I | ACTGG | 1 cut(s) | 446 |
| BseBI | CCWGG | 3 cut(s) | 72, 158, 473 |
| BseDI | CCNNGG | 4 cut(s) | 71, 157, 471, 774 |
| BseGI | GGATG | 4 cut(s) | 349, 511, 600, 731 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 88, 142, 397 |
| BseMII | CTCAG | 2 cut(s) | 37, 285 |
| BseNI | ACTGG | 1 cut(s) | 446 |
| BseRI | GAGGAG | 2 cut(s) | 11, 197 |
| BseX3I | CGGCCG | 1 cut(s) | 777 |
| BseXI | GCAGC | 3 cut(s) | 104, 609, 782 |
| Bsh1236I | CGCG | 5 cut(s) | 200, 302, 359, 580, 776 |
| Bsh1285I | CGRYCG | 2 cut(s) | 398, 780 |
| BshFI | GGCC | 3 cut(s) | 384, 445, 779 |
| BsiEI | CGRYCG | 2 cut(s) | 398, 780 |
| BsiSI | CCGG | 1 cut(s) | 398 |
| BslFI | GGGAC | 1 cut(s) | 554 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 88, 142, 397 |
| BsmAI | GTCTC | 2 cut(s) | 23, 822 |
| BsmBI | CGTCTC | 1 cut(s) | 822 |
| BsmFI | GGGAC | 1 cut(s) | 554 |
| BsmI | GAATGC | 1 cut(s) | 599 |
| BsnI | GGCC | 3 cut(s) | 384, 445, 779 |
| Bsp143I | GATC | 3 cut(s) | 121, 400, 781 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 540 |
| Bsp68I | TCGCGA | 1 cut(s) | 302 |
| BspACI | CCGC | 6 cut(s) | 82, 357, 578, 653, 774, 776 |
| BspANI | GGCC | 3 cut(s) | 384, 445, 779 |
| BspCNI | CTCAG | 2 cut(s) | 36, 286 |
| BspFNI | CGCG | 5 cut(s) | 200, 302, 359, 580, 776 |
| BspLI | GGNNCC | 3 cut(s) | 258, 570, 646 |
| BspPI | GGATC | 2 cut(s) | 116, 408 |
| BsrI | ACTGG | 1 cut(s) | 446 |
| BssECI | CCNNGG | 4 cut(s) | 71, 157, 471, 774 |
| BssMI | GATC | 3 cut(s) | 121, 400, 781 |
| Bst2UI | CCWGG | 3 cut(s) | 72, 158, 473 |
| Bst4CI | ACNGT | 2 cut(s) | 88, 111 |
| Bst6I | CTCTTC | 2 cut(s) | 141, 174 |
| BstBAI | YACGTR | 1 cut(s) | 106 |
| BstC8I | GCNNGC | 2 cut(s) | 578, 615 |
| BstDEI | CTNAG | 3 cut(s) | 23, 294, 540 |
| BstDSI | CCRYGG | 1 cut(s) | 774 |
| BstF5I | GGATG | 4 cut(s) | 349, 511, 600, 731 |
| BstFNI | CGCG | 5 cut(s) | 200, 302, 359, 580, 776 |
| BstHHI | GCGC | 1 cut(s) | 202 |
| BstKTI | GATC | 3 cut(s) | 124, 403, 784 |
| BstMAI | GTCTC | 2 cut(s) | 23, 822 |
| BstMBI | GATC | 3 cut(s) | 121, 400, 781 |
| BstMCI | CGRYCG | 2 cut(s) | 398, 780 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 326, 582, 776 |
| BstNI | CCWGG | 3 cut(s) | 72, 158, 473 |
| BstSCI | CCNGG | 3 cut(s) | 70, 156, 471 |
| BstSNI | TACGTA | 1 cut(s) | 106 |
| BstUI | CGCG | 5 cut(s) | 200, 302, 359, 580, 776 |
| BstV1I | GCAGC | 3 cut(s) | 104, 609, 782 |
| BstV2I | GAAGAC | 1 cut(s) | 187 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 663 |
| BstZI | CGGCCG | 1 cut(s) | 777 |
| BsuI | GTATCC | 1 cut(s) | 95 |
| BsuRI | GGCC | 3 cut(s) | 384, 445, 779 |
| BtgI | CCRYGG | 1 cut(s) | 774 |
| BtgZI | GCGATG | 1 cut(s) | 595 |
| BtsCI | GGATG | 4 cut(s) | 349, 511, 600, 731 |
| BtsIMutI | CAGTG | 1 cut(s) | 93 |
| BtuMI | TCGCGA | 1 cut(s) | 302 |
| Cac8I | GCNNGC | 2 cut(s) | 578, 615 |
| CfoI | GCGC | 1 cut(s) | 202 |
| Cfr13I | GGNCC | 3 cut(s) | 383, 444, 568 |
| Cfr42I | CCGCGG | 1 cut(s) | 777 |
| CseI | GACGC | 1 cut(s) | 39 |
| Csp6I | GTAC | 1 cut(s) | 107 |
| CviAII | CATG | 1 cut(s) | 332 |
| CviQI | GTAC | 1 cut(s) | 107 |
| DdeI | CTNAG | 3 cut(s) | 23, 294, 540 |
| DpnI | GATC | 3 cut(s) | 123, 402, 783 |
| DpnII | GATC | 3 cut(s) | 121, 400, 781 |
| EaeI | YGGCCR | 1 cut(s) | 777 |
| EagI | CGGCCG | 1 cut(s) | 777 |
| Eam1104I | CTCTTC | 2 cut(s) | 141, 174 |
| EarI | CTCTTC | 2 cut(s) | 141, 174 |
| EclXI | CGGCCG | 1 cut(s) | 777 |
| Eco105I | TACGTA | 1 cut(s) | 106 |
| Eco32I | GATATC | 1 cut(s) | 249 |
| Eco47I | GGWCC | 1 cut(s) | 568 |
| Eco52I | CGGCCG | 1 cut(s) | 777 |
| Eco57I | CTGAAG | 1 cut(s) | 195 |
| EcoRI | GAATTC | 1 cut(s) | 223 |
| EcoRII | CCWGG | 3 cut(s) | 70, 156, 471 |
| EcoRV | GATATC | 1 cut(s) | 249 |
| Esp3I | CGTCTC | 1 cut(s) | 822 |
| FaeI | CATG | 1 cut(s) | 335 |
| FaiI | YATR | 9 cut(s) | 64, 66, 120, 307, 309, 313, 315, 333, 428 |
| FaqI | GGGAC | 1 cut(s) | 554 |
| FatI | CATG | 1 cut(s) | 331 |
| FauI | CCCGC | 2 cut(s) | 585, 660 |
| FauNDI | CATATG | 2 cut(s) | 64, 313 |
| Fnu4HI | GCNGC | 6 cut(s) | 93, 357, 598, 771, 774, 777 |
| FokI | GGATG | 4 cut(s) | 356, 518, 587, 718 |
| Fsp4HI | GCNGC | 6 cut(s) | 93, 357, 598, 771, 774, 777 |
| FspBI | CTAG | 3 cut(s) | 39, 203, 696 |
| GlaI | GCGC | 1 cut(s) | 201 |
| GluI | GCNGC | 6 cut(s) | 93, 357, 598, 771, 774, 777 |
| HaeIII | GGCC | 3 cut(s) | 384, 445, 779 |
| HapII | CCGG | 1 cut(s) | 398 |
| HgaI | GACGC | 1 cut(s) | 39 |
| HhaI | GCGC | 1 cut(s) | 202 |
| Hin1II | CATG | 1 cut(s) | 335 |
| Hin6I | GCGC | 1 cut(s) | 200 |
| HinP1I | GCGC | 1 cut(s) | 200 |
| HincII | GTYRAC | 2 cut(s) | 114, 210 |
| HindII | GTYRAC | 2 cut(s) | 114, 210 |
| HinfI | GANTC | 2 cut(s) | 337, 743 |
| HpaI | GTTAAC | 1 cut(s) | 114 |
| HpaII | CCGG | 1 cut(s) | 398 |
| HphI | GGTGA | 7 cut(s) | 125, 173, 277, 379, 552, 663, 717 |
| Hpy166II | GTNNAC | 3 cut(s) | 114, 210, 439 |
| Hpy188I | TCNGA | 2 cut(s) | 26, 786 |
| Hpy188III | TCNNGA | 4 cut(s) | 301, 341, 678, 757 |
| Hpy8I | GTNNAC | 3 cut(s) | 114, 210, 439 |
| HpyAV | CCTTC | 5 cut(s) | 319, 503, 702, 788, 792 |
| HpyCH4III | ACNGT | 2 cut(s) | 88, 111 |
| HpyCH4IV | ACGT | 3 cut(s) | 105, 192, 815 |
| HpyCH4V | TGCA | 2 cut(s) | 585, 597 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 326, 582, 776 |
| HpyF3I | CTNAG | 3 cut(s) | 23, 294, 540 |
| HpySE526I | ACGT | 3 cut(s) | 105, 192, 815 |
| Hsp92II | CATG | 1 cut(s) | 335 |
| HspAI | GCGC | 1 cut(s) | 200 |
| KspAI | GTTAAC | 1 cut(s) | 114 |
| KspI | CCGCGG | 1 cut(s) | 777 |
| Kzo9I | GATC | 3 cut(s) | 121, 400, 781 |
| LmnI | GCTCC | 1 cut(s) | 256 |
| Lsp1109I | GCAGC | 3 cut(s) | 104, 609, 782 |
| LweI | GCATC | 5 cut(s) | 25, 25, 307, 572, 609 |
| MaeI | CTAG | 3 cut(s) | 39, 203, 696 |
| MaeII | ACGT | 3 cut(s) | 105, 192, 815 |
| MaeIII | GTNAC | 1 cut(s) | 723 |
| MalI | GATC | 3 cut(s) | 123, 402, 783 |
| MboI | GATC | 3 cut(s) | 121, 400, 781 |
| MluCI | AATT | 3 cut(s) | 223, 239, 761 |
| MmeI | TCCRAC | 1 cut(s) | 771 |
| MseI | TTAA | 2 cut(s) | 113, 242 |
| MslI | CAYNNNNRTG | 1 cut(s) | 605 |
| MspA1I | CMGCKG | 2 cut(s) | 406, 776 |
| MspI | CCGG | 1 cut(s) | 398 |
| MspR9I | CCNGG | 3 cut(s) | 72, 158, 473 |
| Mva1269I | GAATGC | 1 cut(s) | 599 |
| MvaI | CCWGG | 3 cut(s) | 72, 158, 473 |
| MvnI | CGCG | 5 cut(s) | 200, 302, 359, 580, 776 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 326, 582, 776 |
| NdeI | CATATG | 2 cut(s) | 64, 313 |
| NdeII | GATC | 3 cut(s) | 121, 400, 781 |
| NlaIII | CATG | 1 cut(s) | 335 |
| NlaIV | GGNNCC | 3 cut(s) | 258, 570, 646 |
| NmuCI | GTSAC | 1 cut(s) | 723 |
| NruI | TCGCGA | 1 cut(s) | 302 |
| PctI | GAATGC | 1 cut(s) | 599 |
| PfeI | GAWTC | 2 cut(s) | 337, 743 |
| PkrI | GCNGC | 6 cut(s) | 94, 358, 599, 772, 775, 778 |
| Ppu21I | YACGTR | 1 cut(s) | 106 |
| Psp6I | CCWGG | 3 cut(s) | 70, 156, 471 |
| PspGI | CCWGG | 3 cut(s) | 70, 156, 471 |
| PspN4I | GGNNCC | 3 cut(s) | 258, 570, 646 |
| PspPI | GGNCC | 3 cut(s) | 383, 444, 568 |
| PvuII | CAGCTG | 1 cut(s) | 406 |
| RruI | TCGCGA | 1 cut(s) | 302 |
| RsaI | GTAC | 1 cut(s) | 108 |
| RsaNI | GTAC | 1 cut(s) | 107 |
| RseI | CAYNNNNRTG | 1 cut(s) | 605 |
| SacII | CCGCGG | 1 cut(s) | 777 |
| SaqAI | TTAA | 2 cut(s) | 113, 242 |
| SatI | GCNGC | 6 cut(s) | 93, 357, 598, 771, 774, 777 |
| Sau3AI | GATC | 3 cut(s) | 121, 400, 781 |
| Sau96I | GGNCC | 3 cut(s) | 383, 444, 568 |
| ScrFI | CCNGG | 3 cut(s) | 72, 158, 473 |
| SfaNI | GCATC | 5 cut(s) | 25, 25, 307, 572, 609 |
| Sfr303I | CCGCGG | 1 cut(s) | 777 |
| SgrBI | CCGCGG | 1 cut(s) | 777 |
| SinI | GGWCC | 1 cut(s) | 568 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 605 |
| SmlI | CTYRAG | 2 cut(s) | 233, 269 |
| SmoI | CTYRAG | 2 cut(s) | 233, 269 |
| SnaBI | TACGTA | 1 cut(s) | 106 |
| Sse9I | AATT | 3 cut(s) | 223, 239, 761 |
| SsiI | CCGC | 6 cut(s) | 82, 357, 578, 653, 774, 776 |
| SspMI | CTAG | 3 cut(s) | 39, 203, 696 |
| StyD4I | CCNGG | 3 cut(s) | 70, 156, 471 |
| TaaI | ACNGT | 2 cut(s) | 88, 111 |
| TaiI | ACGT | 3 cut(s) | 108, 195, 818 |
| TaqI | TCGA | 1 cut(s) | 394 |
| TasI | AATT | 3 cut(s) | 223, 239, 761 |
| TauI | GCSGC | 3 cut(s) | 359, 776, 779 |
| TfiI | GAWTC | 2 cut(s) | 337, 743 |
| Tru1I | TTAA | 2 cut(s) | 113, 242 |
| Tru9I | TTAA | 2 cut(s) | 113, 242 |
| TscAI | CASTG | 1 cut(s) | 93 |
| TseFI | GTSAC | 1 cut(s) | 723 |
| TseI | GCWGC | 3 cut(s) | 92, 597, 770 |
| Tsp45I | GTSAC | 1 cut(s) | 723 |
| TspDTI | ATGAA | 3 cut(s) | 183, 522, 626 |
| TspGWI | ACGGA | 2 cut(s) | 269, 810 |
| TspRI | CASTG | 1 cut(s) | 93 |
| VpaK11BI | GGWCC | 1 cut(s) | 568 |
| XapI | RAATTY | 1 cut(s) | 223 |
| XspI | CTAG | 3 cut(s) | 39, 203, 696 |