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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 40 |
| AccI | GTMKAC | 1 cut(s) | 180 |
| AciI | CCGC | 6 cut(s) | 24, 145, 167, 170, 201, 436 |
| AclWI | GGATC | 1 cut(s) | 25 |
| AcoI | YGGCCR | 1 cut(s) | 321 |
| AcsI | RAATTY | 1 cut(s) | 248 |
| AdeI | CACNNNGTG | 1 cut(s) | 60 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 40, 98, 197, 402 |
| AgeI | ACCGGT | 1 cut(s) | 346 |
| AgsI | TTSAA | 1 cut(s) | 187 |
| AjnI | CCWGG | 1 cut(s) | 196 |
| AluBI | AGCT | 2 cut(s) | 68, 155 |
| AluI | AGCT | 2 cut(s) | 68, 155 |
| Alw26I | GTCTC | 2 cut(s) | 18, 82 |
| AlwI | GGATC | 1 cut(s) | 25 |
| Ama87I | CYCGRG | 2 cut(s) | 82, 307 |
| AoxI | GGCC | 3 cut(s) | 303, 321, 449 |
| ApoI | RAATTY | 1 cut(s) | 248 |
| AsiGI | ACCGGT | 1 cut(s) | 346 |
| AspLEI | GCGC | 1 cut(s) | 175 |
| AspS9I | GGNCC | 2 cut(s) | 228, 449 |
| AsuHPI | GGTGA | 2 cut(s) | 336, 446 |
| AvaI | CYCGRG | 2 cut(s) | 82, 307 |
| AvaII | GGWCC | 1 cut(s) | 228 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 325, 357 |
| BceAI | ACGGC | 1 cut(s) | 336 |
| BciT130I | CCWGG | 1 cut(s) | 198 |
| BcoDI | GTCTC | 2 cut(s) | 18, 82 |
| BfaI | CTAG | 1 cut(s) | 257 |
| BfoI | RGCGCY | 1 cut(s) | 176 |
| BisI | GCNGC | 3 cut(s) | 25, 168, 171 |
| BlsI | GCNGC | 3 cut(s) | 26, 169, 172 |
| Bme1390I | CCNGG | 1 cut(s) | 198 |
| Bme18I | GGWCC | 1 cut(s) | 228 |
| BmeT110I | CYCGRG | 2 cut(s) | 82, 307 |
| BmgT120I | GGNCC | 2 cut(s) | 228, 449 |
| BmrFI | CCNGG | 1 cut(s) | 198 |
| BmsI | GCATC | 2 cut(s) | 84, 392 |
| BsaI | GGTCTC | 1 cut(s) | 82 |
| BsaJI | CCNNGG | 2 cut(s) | 39, 113 |
| BsaWI | WCCGGW | 1 cut(s) | 346 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 40, 98, 197, 402 |
| Bse118I | RCCGGY | 1 cut(s) | 346 |
| Bse3DI | GCAATG | 1 cut(s) | 457 |
| BseBI | CCWGG | 1 cut(s) | 198 |
| BseDI | CCNNGG | 2 cut(s) | 39, 113 |
| BseGI | GGATG | 1 cut(s) | 383 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 40, 98, 197, 402 |
| BseMI | GCAATG | 1 cut(s) | 457 |
| BseRI | GAGGAG | 1 cut(s) | 100 |
| BseX3I | CGGCCG | 1 cut(s) | 321 |
| Bsh1285I | CGRYCG | 1 cut(s) | 324 |
| BshFI | GGCC | 3 cut(s) | 305, 323, 451 |
| BshTI | ACCGGT | 1 cut(s) | 346 |
| BsiEI | CGRYCG | 1 cut(s) | 324 |
| BsiHKCI | CYCGRG | 2 cut(s) | 82, 307 |
| BsiSI | CCGG | 3 cut(s) | 130, 324, 347 |
| BslFI | GGGAC | 1 cut(s) | 378 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 40, 98, 197, 402 |
| BsmAI | GTCTC | 2 cut(s) | 18, 82 |
| BsmFI | GGGAC | 1 cut(s) | 378 |
| BsmI | GAATGC | 1 cut(s) | 111 |
| BsnI | GGCC | 3 cut(s) | 305, 323, 451 |
| Bso31I | GGTCTC | 1 cut(s) | 82 |
| BsoBI | CYCGRG | 2 cut(s) | 82, 307 |
| Bsp143I | GATC | 1 cut(s) | 30 |
| BspACI | CCGC | 6 cut(s) | 24, 145, 167, 170, 201, 436 |
| BspANI | GGCC | 3 cut(s) | 305, 323, 451 |
| BspPI | GGATC | 1 cut(s) | 25 |
| BspTNI | GGTCTC | 1 cut(s) | 82 |
| BsrDI | GCAATG | 1 cut(s) | 457 |
| BsrFI | RCCGGY | 1 cut(s) | 346 |
| BssAI | RCCGGY | 1 cut(s) | 346 |
| BssECI | CCNNGG | 2 cut(s) | 39, 113 |
| BssMI | GATC | 1 cut(s) | 30 |
| BssT1I | CCWWGG | 1 cut(s) | 113 |
| Bst2UI | CCWGG | 1 cut(s) | 198 |
| Bst4CI | ACNGT | 1 cut(s) | 332 |
| BstC8I | GCNNGC | 1 cut(s) | 361 |
| BstDSI | CCRYGG | 1 cut(s) | 39 |
| BstF5I | GGATG | 1 cut(s) | 383 |
| BstH2I | RGCGCY | 1 cut(s) | 176 |
| BstHHI | GCGC | 1 cut(s) | 175 |
| BstKTI | GATC | 1 cut(s) | 33 |
| BstMAI | GTCTC | 2 cut(s) | 18, 82 |
| BstMBI | GATC | 1 cut(s) | 30 |
| BstMCI | CGRYCG | 1 cut(s) | 324 |
| BstNI | CCWGG | 1 cut(s) | 198 |
| BstSCI | CCNGG | 1 cut(s) | 196 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 446 |
| BstZI | CGGCCG | 1 cut(s) | 321 |
| BsuRI | GGCC | 3 cut(s) | 305, 323, 451 |
| BtgI | CCRYGG | 1 cut(s) | 39 |
| BtgZI | GCGATG | 1 cut(s) | 378 |
| BtsCI | GGATG | 1 cut(s) | 383 |
| Cac8I | GCNNGC | 1 cut(s) | 361 |
| CfoI | GCGC | 1 cut(s) | 175 |
| Cfr10I | RCCGGY | 1 cut(s) | 346 |
| Cfr13I | GGNCC | 2 cut(s) | 228, 449 |
| CseI | GACGC | 1 cut(s) | 98 |
| CspAI | ACCGGT | 1 cut(s) | 346 |
| CviAII | CATG | 1 cut(s) | 28 |
| CviJI | RGCY | 8 cut(s) | 68, 155, 305, 323, 428, 451, 474, 482 |
| CviKI_1 | RGCY | 8 cut(s) | 68, 155, 305, 323, 428, 451, 474, 482 |
| DpnI | GATC | 1 cut(s) | 32 |
| DpnII | GATC | 1 cut(s) | 30 |
| DraIII | CACNNNGTG | 1 cut(s) | 60 |
| EaeI | YGGCCR | 1 cut(s) | 321 |
| EagI | CGGCCG | 1 cut(s) | 321 |
| EclXI | CGGCCG | 1 cut(s) | 321 |
| Eco130I | CCWWGG | 1 cut(s) | 113 |
| Eco147I | AGGCCT | 1 cut(s) | 305 |
| Eco31I | GGTCTC | 1 cut(s) | 82 |
| Eco47I | GGWCC | 1 cut(s) | 228 |
| Eco52I | CGGCCG | 1 cut(s) | 321 |
| Eco88I | CYCGRG | 2 cut(s) | 82, 307 |
| EcoRII | CCWGG | 1 cut(s) | 196 |
| EcoT14I | CCWWGG | 1 cut(s) | 113 |
| ErhI | CCWWGG | 1 cut(s) | 113 |
| FaeI | CATG | 1 cut(s) | 31 |
| FaiI | YATR | 5 cut(s) | 29, 98, 125, 212, 357 |
| FaqI | GGGAC | 1 cut(s) | 378 |
| FatI | CATG | 1 cut(s) | 27 |
| FauI | CCCGC | 2 cut(s) | 138, 443 |
| FblI | GTMKAC | 1 cut(s) | 180 |
| Fnu4HI | GCNGC | 3 cut(s) | 25, 168, 171 |
| FokI | GGATG | 1 cut(s) | 370 |
| Fsp4HI | GCNGC | 3 cut(s) | 25, 168, 171 |
| FspBI | CTAG | 1 cut(s) | 257 |
| GlaI | GCGC | 1 cut(s) | 174 |
| GluI | GCNGC | 3 cut(s) | 25, 168, 171 |
| HaeII | RGCGCY | 1 cut(s) | 176 |
| HaeIII | GGCC | 3 cut(s) | 305, 323, 451 |
| HapII | CCGG | 3 cut(s) | 130, 324, 347 |
| HgaI | GACGC | 1 cut(s) | 98 |
| HhaI | GCGC | 1 cut(s) | 175 |
| Hin1II | CATG | 1 cut(s) | 31 |
| Hin6I | GCGC | 1 cut(s) | 173 |
| HinP1I | GCGC | 1 cut(s) | 173 |
| HindIII | AAGCTT | 2 cut(s) | 66, 153 |
| HpaII | CCGG | 3 cut(s) | 130, 324, 347 |
| HphI | GGTGA | 2 cut(s) | 336, 446 |
| Hpy166II | GTNNAC | 1 cut(s) | 181 |
| Hpy188III | TCNNGA | 4 cut(s) | 55, 82, 257, 309 |
| Hpy8I | GTNNAC | 1 cut(s) | 181 |
| Hpy99I | CGWCG | 1 cut(s) | 163 |
| HpyCH4III | ACNGT | 1 cut(s) | 332 |
| HpyCH4IV | ACGT | 1 cut(s) | 121 |
| HpySE526I | ACGT | 1 cut(s) | 121 |
| Hsp92II | CATG | 1 cut(s) | 31 |
| HspAI | GCGC | 1 cut(s) | 173 |
| Kzo9I | GATC | 1 cut(s) | 30 |
| LpnPI | CCDG | 5 cut(s) | 143, 183, 210, 337, 360 |
| LweI | GCATC | 2 cut(s) | 84, 392 |
| MaeI | CTAG | 1 cut(s) | 257 |
| MaeII | ACGT | 1 cut(s) | 121 |
| MalI | GATC | 1 cut(s) | 32 |
| MboI | GATC | 1 cut(s) | 30 |
| MboII | GAAGA | 3 cut(s) | 70, 114, 299 |
| MluCI | AATT | 3 cut(s) | 223, 248, 465 |
| MnlI | CCTC | 7 cut(s) | 78, 295, 309, 316, 396, 462, 485 |
| MslI | CAYNNNNRTG | 1 cut(s) | 388 |
| MspI | CCGG | 3 cut(s) | 130, 324, 347 |
| MspR9I | CCNGG | 1 cut(s) | 198 |
| Mva1269I | GAATGC | 1 cut(s) | 111 |
| MvaI | CCWGG | 1 cut(s) | 198 |
| NdeII | GATC | 1 cut(s) | 30 |
| NlaIII | CATG | 1 cut(s) | 31 |
| PaeR7I | CTCGAG | 2 cut(s) | 82, 307 |
| PceI | AGGCCT | 1 cut(s) | 305 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 89, 417 |
| PctI | GAATGC | 1 cut(s) | 111 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 40 |
| PinAI | ACCGGT | 1 cut(s) | 346 |
| PkrI | GCNGC | 3 cut(s) | 26, 169, 172 |
| Psp6I | CCWGG | 1 cut(s) | 196 |
| PspGI | CCWGG | 1 cut(s) | 196 |
| PspPI | GGNCC | 2 cut(s) | 228, 449 |
| RseI | CAYNNNNRTG | 1 cut(s) | 388 |
| SatI | GCNGC | 3 cut(s) | 25, 168, 171 |
| Sau3AI | GATC | 1 cut(s) | 30 |
| Sau96I | GGNCC | 2 cut(s) | 228, 449 |
| ScrFI | CCNGG | 1 cut(s) | 198 |
| SetI | ASST | 4 cut(s) | 70, 124, 157, 407 |
| SfaNI | GCATC | 2 cut(s) | 84, 392 |
| Sfr274I | CTCGAG | 2 cut(s) | 82, 307 |
| SgrAI | CRCCGGYG | 1 cut(s) | 346 |
| SinI | GGWCC | 1 cut(s) | 228 |
| SlaI | CTCGAG | 2 cut(s) | 82, 307 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 388 |
| SmlI | CTYRAG | 2 cut(s) | 82, 307 |
| SmoI | CTYRAG | 2 cut(s) | 82, 307 |
| Sse9I | AATT | 3 cut(s) | 223, 248, 465 |
| SseBI | AGGCCT | 1 cut(s) | 305 |
| SsiI | CCGC | 6 cut(s) | 24, 145, 167, 170, 201, 436 |
| SspMI | CTAG | 1 cut(s) | 257 |
| StuI | AGGCCT | 1 cut(s) | 305 |
| StyD4I | CCNGG | 1 cut(s) | 196 |
| StyI | CCWWGG | 1 cut(s) | 113 |
| TaaI | ACNGT | 1 cut(s) | 332 |
| TaiI | ACGT | 1 cut(s) | 124 |
| TaqI | TCGA | 7 cut(s) | 71, 83, 158, 216, 308, 407, 477 |
| TaqII | GACCGA | 1 cut(s) | 106 |
| TasI | AATT | 3 cut(s) | 223, 248, 465 |
| TauI | GCSGC | 3 cut(s) | 27, 170, 173 |
| TspDTI | ATGAA | 1 cut(s) | 389 |
| TspGWI | ACGGA | 3 cut(s) | 28, 259, 426 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 40 |
| VpaK11BI | GGWCC | 1 cut(s) | 228 |
| XapI | RAATTY | 1 cut(s) | 248 |
| XbaI | TCTAGA | 1 cut(s) | 256 |
| XhoI | CTCGAG | 2 cut(s) | 82, 307 |
| XmiI | GTMKAC | 1 cut(s) | 180 |
| XspI | CTAG | 1 cut(s) | 257 |