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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 2 cut(s) | 350, 774 |
| AccII | CGCG | 3 cut(s) | 104, 285, 291 |
| AclWI | GGATC | 3 cut(s) | 583, 596, 663 |
| AcoI | YGGCCR | 2 cut(s) | 538, 695 |
| AcsI | RAATTY | 1 cut(s) | 371 |
| AcuI | CTGAAG | 2 cut(s) | 148, 235 |
| AfaI | GTAC | 1 cut(s) | 720 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 413 |
| AgeI | ACCGGT | 1 cut(s) | 825 |
| AgsI | TTSAA | 2 cut(s) | 366, 878 |
| AhlI | ACTAGT | 1 cut(s) | 134 |
| AjiI | CACGTC | 1 cut(s) | 847 |
| AjnI | CCWGG | 1 cut(s) | 867 |
| AleI | CACNNNNGTG | 1 cut(s) | 103 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 124, 156 |
| AluBI | AGCT | 3 cut(s) | 464, 660, 747 |
| AluI | AGCT | 3 cut(s) | 464, 660, 747 |
| Alw26I | GTCTC | 1 cut(s) | 804 |
| AlwI | GGATC | 3 cut(s) | 583, 596, 663 |
| AoxI | GGCC | 3 cut(s) | 538, 695, 892 |
| ApaI | GGGCCC | 1 cut(s) | 896 |
| ApeKI | GCWGC | 1 cut(s) | 15 |
| ApoI | RAATTY | 1 cut(s) | 371 |
| AsiGI | ACCGGT | 1 cut(s) | 825 |
| AspLEI | GCGC | 1 cut(s) | 291 |
| AspS9I | GGNCC | 3 cut(s) | 416, 892, 893 |
| AsuNHI | GCTAGC | 1 cut(s) | 747 |
| AvaII | GGWCC | 1 cut(s) | 416 |
| BaeGI | GKGCMC | 2 cut(s) | 473, 896 |
| BalI | TGGCCA | 1 cut(s) | 697 |
| BamHI | GGATCC | 1 cut(s) | 588 |
| BanII | GRGCYC | 1 cut(s) | 896 |
| BbvI | GCAGC | 1 cut(s) | 27 |
| BccI | CCATC | 5 cut(s) | 18, 173, 389, 489, 687 |
| BceAI | ACGGC | 2 cut(s) | 441, 652 |
| BciT130I | CCWGG | 1 cut(s) | 869 |
| BcoDI | GTCTC | 1 cut(s) | 804 |
| BcuI | ACTAGT | 1 cut(s) | 134 |
| BfaI | CTAG | 6 cut(s) | 135, 265, 465, 597, 736, 748 |
| BfmI | CTRYAG | 1 cut(s) | 113 |
| BglII | AGATCT | 1 cut(s) | 79 |
| BisI | GCNGC | 9 cut(s) | 16, 235, 283, 351, 379, 541, 571, 752, 755 |
| BlsI | GCNGC | 9 cut(s) | 17, 236, 284, 352, 380, 542, 572, 753, 756 |
| Bme1390I | CCNGG | 1 cut(s) | 869 |
| Bme18I | GGWCC | 1 cut(s) | 416 |
| BmgBI | CACGTC | 1 cut(s) | 847 |
| BmgT120I | GGNCC | 3 cut(s) | 416, 892, 893 |
| BmiI | GGNNCC | 4 cut(s) | 590, 866, 893, 894 |
| BmrFI | CCNGG | 1 cut(s) | 869 |
| BmsI | GCATC | 1 cut(s) | 277 |
| BmtI | GCTAGC | 1 cut(s) | 751 |
| BpmI | CTGGAG | 1 cut(s) | 68 |
| BpuEI | CTTGAG | 1 cut(s) | 480 |
| BsaJI | CCNNGG | 1 cut(s) | 683 |
| BsaWI | WCCGGW | 1 cut(s) | 825 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 66, 96 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 413 |
| Bse118I | RCCGGY | 1 cut(s) | 825 |
| Bse1I | ACTGG | 1 cut(s) | 85 |
| Bse3DI | GCAATG | 1 cut(s) | 263 |
| BseBI | CCWGG | 1 cut(s) | 869 |
| BseDI | CCNNGG | 1 cut(s) | 683 |
| BseGI | GGATG | 3 cut(s) | 500, 679, 768 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 413 |
| BseMI | GCAATG | 1 cut(s) | 263 |
| BseMII | CTCAG | 1 cut(s) | 288 |
| BseNI | ACTGG | 1 cut(s) | 85 |
| BseSI | GKGCMC | 2 cut(s) | 473, 896 |
| BseXI | GCAGC | 1 cut(s) | 27 |
| BseYI | CCCAGC | 1 cut(s) | 238 |
| BsgI | GTGCAG | 1 cut(s) | 127 |
| Bsh1236I | CGCG | 3 cut(s) | 104, 285, 291 |
| Bsh1285I | CGRYCG | 1 cut(s) | 172 |
| BshFI | GGCC | 3 cut(s) | 540, 697, 894 |
| BshTI | ACCGGT | 1 cut(s) | 825 |
| BsiEI | CGRYCG | 1 cut(s) | 172 |
| BsiSI | CCGG | 1 cut(s) | 826 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 413 |
| BsmAI | GTCTC | 1 cut(s) | 804 |
| BsmI | GAATGC | 1 cut(s) | 338 |
| BsnI | GGCC | 3 cut(s) | 540, 697, 894 |
| Bsp120I | GGGCCC | 1 cut(s) | 892 |
| Bsp1286I | GDGCHC | 2 cut(s) | 473, 896 |
| Bsp143I | GATC | 3 cut(s) | 79, 588, 668 |
| BspANI | GGCC | 3 cut(s) | 540, 697, 894 |
| BspCNI | CTCAG | 1 cut(s) | 287 |
| BspFNI | CGCG | 3 cut(s) | 104, 285, 291 |
| BspLI | GGNNCC | 4 cut(s) | 590, 866, 893, 894 |
| BspOI | GCTAGC | 1 cut(s) | 751 |
| BspPI | GGATC | 3 cut(s) | 583, 596, 663 |
| BsrBI | CCGCTC | 2 cut(s) | 350, 774 |
| BsrDI | GCAATG | 1 cut(s) | 263 |
| BsrFI | RCCGGY | 1 cut(s) | 825 |
| BsrI | ACTGG | 1 cut(s) | 85 |
| BssAI | RCCGGY | 1 cut(s) | 825 |
| BssECI | CCNNGG | 1 cut(s) | 683 |
| BssMI | GATC | 3 cut(s) | 79, 588, 668 |
| BssT1I | CCWWGG | 1 cut(s) | 683 |
| Bst2UI | CCWGG | 1 cut(s) | 869 |
| Bst4CI | ACNGT | 1 cut(s) | 114 |
| Bst6I | CTCTTC | 1 cut(s) | 523 |
| BstC8I | GCNNGC | 4 cut(s) | 106, 254, 287, 749 |
| BstDEI | CTNAG | 2 cut(s) | 274, 629 |
| BstEII | GGTNACC | 1 cut(s) | 821 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 411 |
| BstF5I | GGATG | 3 cut(s) | 500, 679, 768 |
| BstFNI | CGCG | 3 cut(s) | 104, 285, 291 |
| BstHHI | GCGC | 1 cut(s) | 291 |
| BstKTI | GATC | 3 cut(s) | 82, 591, 671 |
| BstMAI | GTCTC | 1 cut(s) | 804 |
| BstMBI | GATC | 3 cut(s) | 79, 588, 668 |
| BstMCI | CGRYCG | 1 cut(s) | 172 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 15, 258, 288, 771 |
| BstNI | CCWGG | 1 cut(s) | 869 |
| BstPI | GGTNACC | 1 cut(s) | 821 |
| BstSCI | CCNGG | 1 cut(s) | 867 |
| BstSFI | CTRYAG | 1 cut(s) | 113 |
| BstSLI | GKGCMC | 2 cut(s) | 473, 896 |
| BstUI | CGCG | 3 cut(s) | 104, 285, 291 |
| BstV1I | GCAGC | 1 cut(s) | 27 |
| BstX2I | RGATCY | 3 cut(s) | 79, 588, 668 |
| BstYI | RGATCY | 3 cut(s) | 79, 588, 668 |
| BsuRI | GGCC | 3 cut(s) | 540, 697, 894 |
| BtgZI | GCGATG | 1 cut(s) | 539 |
| BtrI | CACGTC | 1 cut(s) | 847 |
| BtsCI | GGATG | 3 cut(s) | 500, 679, 768 |
| Cac8I | GCNNGC | 4 cut(s) | 106, 254, 287, 749 |
| CfoI | GCGC | 1 cut(s) | 291 |
| Cfr10I | RCCGGY | 1 cut(s) | 825 |
| Cfr13I | GGNCC | 3 cut(s) | 416, 892, 893 |
| CseI | GACGC | 1 cut(s) | 250 |
| Csp6I | GTAC | 1 cut(s) | 719 |
| CspAI | ACCGGT | 1 cut(s) | 825 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 548, 583 |
| CviAII | CATG | 3 cut(s) | 387, 500, 614 |
| CviQI | GTAC | 1 cut(s) | 719 |
| DdeI | CTNAG | 2 cut(s) | 274, 629 |
| DpnI | GATC | 3 cut(s) | 81, 590, 670 |
| DpnII | GATC | 3 cut(s) | 79, 588, 668 |
| EaeI | YGGCCR | 2 cut(s) | 538, 695 |
| Eam1104I | CTCTTC | 1 cut(s) | 523 |
| EarI | CTCTTC | 1 cut(s) | 523 |
| EciI | GGCGGA | 1 cut(s) | 151 |
| Eco130I | CCWWGG | 1 cut(s) | 683 |
| Eco24I | GRGCYC | 1 cut(s) | 896 |
| Eco47I | GGWCC | 1 cut(s) | 416 |
| Eco57I | CTGAAG | 2 cut(s) | 148, 235 |
| Eco91I | GGTNACC | 1 cut(s) | 821 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 411 |
| EcoO109I | RGGNCCY | 2 cut(s) | 892, 893 |
| EcoO65I | GGTNACC | 1 cut(s) | 821 |
| EcoRI | GAATTC | 1 cut(s) | 371 |
| EcoRII | CCWGG | 1 cut(s) | 867 |
| EcoT14I | CCWWGG | 1 cut(s) | 683 |
| EcoT38I | GRGCYC | 1 cut(s) | 896 |
| ErhI | CCWWGG | 1 cut(s) | 683 |
| FaeI | CATG | 3 cut(s) | 390, 503, 617 |
| FaiI | YATR | 8 cut(s) | 312, 342, 383, 388, 501, 615, 723, 907 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 337, 369, 880, 912 |
| FatI | CATG | 3 cut(s) | 386, 499, 613 |
| Fnu4HI | GCNGC | 9 cut(s) | 16, 235, 283, 351, 379, 541, 571, 752, 755 |
| FokI | GGATG | 3 cut(s) | 507, 666, 755 |
| FriOI | GRGCYC | 1 cut(s) | 896 |
| Fsp4HI | GCNGC | 9 cut(s) | 16, 235, 283, 351, 379, 541, 571, 752, 755 |
| FspBI | CTAG | 6 cut(s) | 135, 265, 465, 597, 736, 748 |
| GlaI | GCGC | 1 cut(s) | 290 |
| GluI | GCNGC | 9 cut(s) | 16, 235, 283, 351, 379, 541, 571, 752, 755 |
| GsaI | CCCAGC | 1 cut(s) | 242 |
| GsuI | CTGGAG | 1 cut(s) | 68 |
| HaeIII | GGCC | 3 cut(s) | 540, 697, 894 |
| HapII | CCGG | 1 cut(s) | 826 |
| HgaI | GACGC | 1 cut(s) | 250 |
| HhaI | GCGC | 1 cut(s) | 291 |
| Hin1II | CATG | 3 cut(s) | 390, 503, 617 |
| Hin6I | GCGC | 1 cut(s) | 289 |
| HinP1I | GCGC | 1 cut(s) | 289 |
| HincII | GTYRAC | 3 cut(s) | 62, 626, 902 |
| HindII | GTYRAC | 3 cut(s) | 62, 626, 902 |
| HpaI | GTTAAC | 1 cut(s) | 62 |
| HpaII | CCGG | 1 cut(s) | 826 |
| Hpy166II | GTNNAC | 6 cut(s) | 56, 62, 439, 549, 626, 902 |
| Hpy188I | TCNGA | 4 cut(s) | 128, 449, 652, 801 |
| Hpy188III | TCNNGA | 2 cut(s) | 143, 327 |
| Hpy8I | GTNNAC | 6 cut(s) | 56, 62, 439, 549, 626, 902 |
| Hpy99I | CGWCG | 1 cut(s) | 427 |
| HpyAV | CCTTC | 3 cut(s) | 210, 372, 882 |
| HpyCH4III | ACNGT | 1 cut(s) | 114 |
| HpyCH4IV | ACGT | 3 cut(s) | 58, 565, 846 |
| HpyCH4V | TGCA | 4 cut(s) | 36, 108, 515, 617 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 15, 258, 288, 771 |
| HpyF3I | CTNAG | 2 cut(s) | 274, 629 |
| HpySE526I | ACGT | 3 cut(s) | 58, 565, 846 |
| Hsp92II | CATG | 3 cut(s) | 390, 503, 617 |
| HspAI | GCGC | 1 cut(s) | 289 |
| KspAI | GTTAAC | 1 cut(s) | 62 |
| Kzo9I | GATC | 3 cut(s) | 79, 588, 668 |
| Lsp1109I | GCAGC | 1 cut(s) | 27 |
| LweI | GCATC | 1 cut(s) | 277 |
| MaeI | CTAG | 6 cut(s) | 135, 265, 465, 597, 736, 748 |
| MaeII | ACGT | 3 cut(s) | 58, 565, 846 |
| MaeIII | GTNAC | 4 cut(s) | 87, 293, 821, 854 |
| MalI | GATC | 3 cut(s) | 81, 590, 670 |
| MbiI | CCGCTC | 2 cut(s) | 350, 774 |
| MboI | GATC | 3 cut(s) | 79, 588, 668 |
| MboII | GAAGA | 3 cut(s) | 141, 404, 540 |
| MfeI | CAATTG | 1 cut(s) | 489 |
| MflI | RGATCY | 3 cut(s) | 79, 588, 668 |
| MhlI | GDGCHC | 2 cut(s) | 473, 896 |
| MlsI | TGGCCA | 1 cut(s) | 697 |
| MluCI | AATT | 2 cut(s) | 371, 489 |
| MluNI | TGGCCA | 1 cut(s) | 697 |
| MnlI | CCTC | 8 cut(s) | 165, 186, 242, 407, 448, 578, 638, 795 |
| Mox20I | TGGCCA | 1 cut(s) | 697 |
| MscI | TGGCCA | 1 cut(s) | 697 |
| MseI | TTAA | 2 cut(s) | 61, 355 |
| MslI | CAYNNNNRTG | 1 cut(s) | 103 |
| Msp20I | TGGCCA | 1 cut(s) | 697 |
| MspI | CCGG | 1 cut(s) | 826 |
| MspR9I | CCNGG | 1 cut(s) | 869 |
| MunI | CAATTG | 1 cut(s) | 489 |
| Mva1269I | GAATGC | 1 cut(s) | 338 |
| MvaI | CCWGG | 1 cut(s) | 869 |
| MvnI | CGCG | 3 cut(s) | 104, 285, 291 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 15, 258, 288, 771 |
| NdeII | GATC | 3 cut(s) | 79, 588, 668 |
| NheI | GCTAGC | 1 cut(s) | 747 |
| NlaIII | CATG | 3 cut(s) | 390, 503, 617 |
| NlaIV | GGNNCC | 4 cut(s) | 590, 866, 893, 894 |
| NmuCI | GTSAC | 1 cut(s) | 854 |
| OliI | CACNNNNGTG | 1 cut(s) | 103 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 562 |
| PctI | GAATGC | 1 cut(s) | 338 |
| PinAI | ACCGGT | 1 cut(s) | 825 |
| PkrI | GCNGC | 9 cut(s) | 17, 236, 284, 352, 380, 542, 572, 753, 756 |
| Psp6I | CCWGG | 1 cut(s) | 867 |
| PspEI | GGTNACC | 1 cut(s) | 821 |
| PspFI | CCCAGC | 1 cut(s) | 238 |
| PspGI | CCWGG | 1 cut(s) | 867 |
| PspN4I | GGNNCC | 4 cut(s) | 590, 866, 893, 894 |
| PspOMI | GGGCCC | 1 cut(s) | 892 |
| PspPI | GGNCC | 3 cut(s) | 416, 892, 893 |
| PsuI | RGATCY | 3 cut(s) | 79, 588, 668 |
| RsaI | GTAC | 1 cut(s) | 720 |
| RsaNI | GTAC | 1 cut(s) | 719 |
| RseI | CAYNNNNRTG | 1 cut(s) | 103 |
| SaqAI | TTAA | 2 cut(s) | 61, 355 |
| SatI | GCNGC | 9 cut(s) | 16, 235, 283, 351, 379, 541, 571, 752, 755 |
| Sau3AI | GATC | 3 cut(s) | 79, 588, 668 |
| Sau96I | GGNCC | 3 cut(s) | 416, 892, 893 |
| ScrFI | CCNGG | 1 cut(s) | 869 |
| SduI | GDGCHC | 2 cut(s) | 473, 896 |
| SfaNI | GCATC | 1 cut(s) | 277 |
| SfcI | CTRYAG | 1 cut(s) | 113 |
| SinI | GGWCC | 1 cut(s) | 416 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 103 |
| SmlI | CTYRAG | 1 cut(s) | 459 |
| SmoI | CTYRAG | 1 cut(s) | 459 |
| SpeI | ACTAGT | 1 cut(s) | 134 |
| Sse9I | AATT | 2 cut(s) | 371, 489 |
| SspMI | CTAG | 6 cut(s) | 135, 265, 465, 597, 736, 748 |
| StyD4I | CCNGG | 1 cut(s) | 867 |
| StyI | CCWWGG | 1 cut(s) | 683 |
| TaaI | ACNGT | 1 cut(s) | 114 |
| TaiI | ACGT | 3 cut(s) | 61, 568, 849 |
| TaqI | TCGA | 2 cut(s) | 168, 200 |
| TaqII | GACCGA | 1 cut(s) | 186 |
| TasI | AATT | 2 cut(s) | 371, 489 |
| TatI | WGTACW | 1 cut(s) | 718 |
| TauI | GCSGC | 8 cut(s) | 237, 285, 353, 381, 543, 573, 754, 757 |
| Tru1I | TTAA | 2 cut(s) | 61, 355 |
| Tru9I | TTAA | 2 cut(s) | 61, 355 |
| TseFI | GTSAC | 1 cut(s) | 854 |
| TseI | GCWGC | 1 cut(s) | 15 |
| Tsp45I | GTSAC | 1 cut(s) | 854 |
| TspDTI | ATGAA | 2 cut(s) | 516, 901 |
| VpaK11BI | GGWCC | 1 cut(s) | 416 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 411 |
| XapI | RAATTY | 1 cut(s) | 371 |
| XspI | CTAG | 6 cut(s) | 135, 265, 465, 597, 736, 748 |