Rmu_co8478117.1_g000001

Retrotransposon gag protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8478117.1
OG0000057
Physical Location & Seq
Forward (+)
1 .. 2109
2109 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8478117.1_g000001.1.cds

Sequence Viewer

Length: 1329 bp
gccctggtaattggtggtaacaaggctactccaatgtcctcgcaaaagagtaagactctgaagaccaatgaaggcactcctgctaatcctgtcgcctttactcaaaacgacagtgacgaggcggagaatgtctatgaagaacttctagggaattattatggtattgaccaggctgacactccaatcaaaataatggccttggtaaaggatgcagccgtaccagcgatgacactacagccatccactattccccggacaattcgcctagaggaaggtacagtagccgctagccaagctacacctctgcagaatgcttgccagaacgtggtgatacctcctcctggtccggtctatgtgagacgtgaagaggttgaggagatgatcagactggcgaatctgagggcccacctagatagggtttatgagggacctttcccgccgcatataatgctcgaaccattttccagaggctacaaaaatattatattatctacctttttaggagaggatactgaggacgcgacaacccatctggctaggtttaaagtgcagtgtgaccaatatcagaatgatgacatcctcaagtgcaggatctttggcacttctctatctggcgctgcttttagatggttttctaaactgcggccagggttagtgccggcttcctacgatccatactaccatcatcaaggggaagaagtttgccaggaagaagatgatgaagaggagaatgatgtctccgtgtttaaactgacagggaggaagagctcagccctcaagaaattgaagatatctaaagaacctattaaactcaagtctgtggccttcaccaaacttgagtttgcgacgtatacatatgatgccaataaggcacatgagattttaggtgagatgatcgccgtgaagatggtgaagacggacttcggaccttttcctcgtccagatcagctgaaaggaaagaagtactgcaaattccataatctcccaagaacaagagacaagatagagtcaccgtcatccacaagggactccaacttgttcaagaaactaaatgcagctgcagcagaacataaacaagatgacagggctaggaatgagcacaaagatgtcttgaacaaaccgtacattccaccttcttcaacgtcttccatcaaggaaggcaactggtataccagagagaaagggaaagcagtggagattagccattccaagaaaaggaagctgcaacgaaggtgtttggctccagttttgttgcagctggtcaacggtctcttttcttgcgcgggagtgctagcaccgtccggtgcggtcgtcgggggtgtcccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotrans_gag

Protein Analysis

442

Amino Acids

49.24

Weight (kDa)

8.72

Isoelectric Point (pI)

46.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000057)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00341 FvH4_2g18201 FvH4_2g24491 FvH4_2g24511 FvH4_3g22961 FvH4_3g33532 FvH4_3g33534 FvH4_4g05275 FvH4_4g12372 FvH4_5g20143 FvH4_7g12392
pyrus_communis pycom12g16120
rosa_chinensis RchiOBHm_Chr5g0023531 RchiOBHm_Chr6g0271201
rosa_laevigata RLG00000030639
rosa_multiflora Rmu_co8016136.1_g000001 Rmu_co8027180.1_g000001 Rmu_co8041016.1_g000001 Rmu_co8052812.1_g000001 Rmu_co8152468.1_g000001 Rmu_co8165796.1_g000001 Rmu_co8170214.1_g000001 Rmu_co8227433.1_g000001 Rmu_co8241379.1_g000001 Rmu_co8254305.1_g000001 Rmu_co8258647.1_g000001 Rmu_co8265535.1_g000002 Rmu_co8276845.1_g000001 Rmu_co8296303.1_g000001 Rmu_co8304827.1_g000001 Rmu_co8308345.1_g000001 Rmu_co8320493.1_g000002 Rmu_co8326955.1_g000001 Rmu_co8331007.1_g000001 Rmu_co8335625.1_g000001 Rmu_co8354465.1_g000001 Rmu_co8360201.1_g000001 Rmu_co8362075.1_g000002 Rmu_co8362991.1_g000001 Rmu_co8364567.1_g000001 Rmu_co8365273.1_g000001 Rmu_co8387267.1_g000001 Rmu_co8395251.1_g000002 Rmu_co8396677.1_g000001 Rmu_co8457659.1_g000001 Rmu_co8478117.1_g000001 Rmu_co8487163.1_g000001 Rmu_co8498169.1_g000001 Rmu_sc0000029.1_g000022 Rmu_sc0000063.1_g000007 Rmu_sc0000112.1_g000020 Rmu_sc0000146.1_g000006 Rmu_sc0000245.1_g000015 Rmu_sc0000276.1_g000036 Rmu_sc0000334.1_g000033 Rmu_sc0000334.1_g000034 Rmu_sc0000434.1_g000019 Rmu_sc0000441.1_g000118 Rmu_sc0000533.1_g000054 Rmu_sc0000533.1_g000055 Rmu_sc0000595.1_g000041 Rmu_sc0000663.1_g000019 Rmu_sc0000673.1_g000002 Rmu_sc0000698.1_g000102 Rmu_sc0000745.1_g000007 Rmu_sc0000768.1_g000018 Rmu_sc0000811.1_g000012 Rmu_sc0000826.1_g000009 Rmu_sc0000826.1_g000011 Rmu_sc0001051.1_g000042 Rmu_sc0001051.1_g000043 Rmu_sc0001148.1_g000014 Rmu_sc0001198.1_g000021 Rmu_sc0001227.1_g000008 Rmu_sc0001250.1_g000028 Rmu_sc0001395.1_g000019 Rmu_sc0001395.1_g000020 Rmu_sc0001396.1_g000002 Rmu_sc0001424.1_g000007 Rmu_sc0001455.1_g000025 Rmu_sc0001455.1_g000029 Rmu_sc0001499.1_g000036 Rmu_sc0001539.1_g000001 Rmu_sc0001562.1_g000027 Rmu_sc0001563.1_g000024 Rmu_sc0001719.1_g000022 Rmu_sc0001796.1_g000008 Rmu_sc0001884.1_g000022 Rmu_sc0001903.1_g000018 Rmu_sc0002041.1_g000012 Rmu_sc0002096.1_g000002 Rmu_sc0002126.1_g000027 Rmu_sc0002181.1_g000010 Rmu_sc0002259.1_g000004 Rmu_sc0002279.1_g000018 Rmu_sc0002312.1_g000060 Rmu_sc0002383.1_g000011 Rmu_sc0002401.1_g000012 Rmu_sc0002509.1_g000028 Rmu_sc0002569.1_g000008 Rmu_sc0002587.1_g000037 Rmu_sc0002665.1_g000006 Rmu_sc0002698.1_g000018 Rmu_sc0002724.1_g000002 Rmu_sc0002727.1_g000011 Rmu_sc0002927.1_g000055 Rmu_sc0002927.1_g000056 Rmu_sc0002943.1_g000009 Rmu_sc0002943.1_g000023 Rmu_sc0002998.1_g000001 Rmu_sc0003089.1_g000036 Rmu_sc0003127.1_g000022 Rmu_sc0003127.1_g000040 Rmu_sc0003207.1_g000010 Rmu_sc0003207.1_g000011 Rmu_sc0003275.1_g000034 Rmu_sc0003275.1_g000036 Rmu_sc0003337.1_g000047 Rmu_sc0003376.1_g000004 Rmu_sc0003522.1_g000024 Rmu_sc0003613.1_g000007 Rmu_sc0003708.1_g000026 Rmu_sc0003784.1_g000018 Rmu_sc0004079.1_g000005 Rmu_sc0004092.1_g000017 Rmu_sc0004168.1_g000058 Rmu_sc0004174.1_g000019 Rmu_sc0004199.1_g000049 Rmu_sc0004230.1_g000005 Rmu_sc0004283.1_g000021 Rmu_sc0004283.1_g000022 Rmu_sc0004314.1_g000017 Rmu_sc0004538.1_g000006 Rmu_sc0004542.1_g000011 Rmu_sc0004602.1_g000024 Rmu_sc0004641.1_g000006 Rmu_sc0004862.1_g000011 Rmu_sc0004941.1_g000043 Rmu_sc0005003.1_g000003 Rmu_sc0005112.1_g000018 Rmu_sc0005144.1_g000014 Rmu_sc0005266.1_g000014 Rmu_sc0005418.1_g000004 Rmu_sc0005627.1_g000006 Rmu_sc0005652.1_g000022 Rmu_sc0005747.1_g000032 Rmu_sc0005982.1_g000013 Rmu_sc0006050.1_g000017 Rmu_sc0006059.1_g000035 Rmu_sc0006128.1_g000002 Rmu_sc0006228.1_g000009 Rmu_sc0006243.1_g000009 Rmu_sc0006300.1_g000004 Rmu_sc0006463.1_g000007 Rmu_sc0006579.1_g000016 Rmu_sc0006595.1_g000011 Rmu_sc0006624.1_g000006 Rmu_sc0006624.1_g000007 Rmu_sc0006624.1_g000008 Rmu_sc0006674.1_g000025 Rmu_sc0006792.1_g000013 Rmu_sc0006872.1_g000022 Rmu_sc0006984.1_g000009 Rmu_sc0006984.1_g000010 Rmu_sc0006986.1_g000011 Rmu_sc0007016.1_g000001 Rmu_sc0007221.1_g000006 Rmu_sc0007222.1_g000005 Rmu_sc0007222.1_g000006 Rmu_sc0007251.1_g000001 Rmu_sc0007777.1_g000037 Rmu_sc0007826.1_g000018 Rmu_sc0008053.1_g000015 Rmu_sc0008502.1_g000006 Rmu_sc0008659.1_g000009 Rmu_sc0009045.1_g000009 Rmu_sc0009045.1_g000010 Rmu_sc0009060.1_g000012 Rmu_sc0009360.1_g000024 Rmu_sc0009431.1_g000001 Rmu_sc0009606.1_g000014 Rmu_sc0009774.1_g000001 Rmu_sc0009844.1_g000014 Rmu_sc0010313.1_g000001 Rmu_sc0010454.1_g000008 Rmu_sc0010543.1_g000016 Rmu_sc0010900.1_g000002 Rmu_sc0010925.1_g000009 Rmu_sc0011136.1_g000012 Rmu_sc0011534.1_g000004 Rmu_sc0011809.1_g000007 Rmu_sc0011917.1_g000005 Rmu_sc0012103.1_g000001 Rmu_sc0012287.1_g000001 Rmu_sc0012303.1_g000007 Rmu_sc0012344.1_g000009 Rmu_sc0012674.1_g000007 Rmu_sc0012686.1_g000001 Rmu_sc0012742.1_g000005 Rmu_sc0012746.1_g000026 Rmu_sc0012746.1_g000027 Rmu_sc0013419.1_g000008 Rmu_sc0014866.1_g000004 Rmu_sc0015325.1_g000011 Rmu_sc0015486.1_g000005 Rmu_sc0015651.1_g000002 Rmu_sc0015783.1_g000001 Rmu_sc0016387.1_g000009 Rmu_sc0017518.1_g000005 Rmu_sc0018480.1_g000001 Rmu_sc0018537.1_g000003 Rmu_sc0019200.1_g000002 Rmu_sc0019544.1_g000014 Rmu_sc0019544.1_g000015 Rmu_sc0019873.1_g000001 Rmu_sc0020392.1_g000001 Rmu_sc0020466.1_g000001 Rmu_sc0022008.1_g000001 Rmu_sc0022008.1_g000002 Rmu_sc0022274.1_g000001 Rmu_sc0023644.1_g000005 Rmu_sc0024657.1_g000001 Rmu_sc0024721.1_g000003 Rmu_sc0025790.1_g000001 Rmu_sc0026866.1_g000001 Rmu_sc0027363.1_g000002 Rmu_sc0027485.1_g000001 Rmu_sc0028394.1_g000001 Rmu_sc0033121.1_g000002 Rmu_sc0033838.1_g000001 Rmu_sc0035536.1_g000001 Rmu_sc0036296.1_g000001 Rmu_sc0036297.1_g000001 Rmu_sc0036298.1_g000001 Rmu_sc0036797.1_g000001 Rmu_sc0037010.1_g000001 Rmu_sc0037444.1_g000002 Rmu_sc0039012.1_g000002 Rmu_sc0040172.1_g000001 Rmu_sc0042083.1_g000001 Rmu_ssc0000018.1_g000001 Rmu_ssc0000171.1_g000032 Rmu_ssc0000213.1_g000064 Rmu_ssc0000213.1_g000096 Rmu_ssc0000262.1_g000017 Rmu_ssc0000295.1_g000036 Rmu_ssc0000343.1_g000008 Rmu_ssc0000398.1_g000003 Rmu_ssc0000400.1_g000085 Rmu_ssc0000438.1_g000007 Rmu_ssc0000478.1_g000003
rosa_roxburghii Rroxscaffold_166G00440710 Rroxscaffold_166G00440720 Rroxscaffold_174G00435300 Rroxscaffold_174G00435310 Rroxscaffold_177G00434290 Rroxscaffold_177G00434300 Rroxscaffold_177G00434310 Rroxscaffold_178G00437310 Rroxscaffold_1G00002500 Rroxscaffold_1G00004730 Rroxscaffold_1G00008660 Rroxscaffold_1G00008670 Rroxscaffold_1G00008680 Rroxscaffold_1G00008690 Rroxscaffold_1G00010260 Rroxscaffold_1G00015670 Rroxscaffold_1G00021140 Rroxscaffold_1G00024380 Rroxscaffold_1G00032420 Rroxscaffold_1G00050600 Rroxscaffold_1G00050610 Rroxscaffold_1G00055970 Rroxscaffold_1G00066220 Rroxscaffold_2G00085370 Rroxscaffold_2G00092350 Rroxscaffold_2G00092360 Rroxscaffold_2G00093350 Rroxscaffold_2G00097090 Rroxscaffold_2G00108040 Rroxscaffold_2G00109970 Rroxscaffold_2G00111470 Rroxscaffold_2G00111480 Rroxscaffold_2G00112000 Rroxscaffold_2G00112060 Rroxscaffold_2G00129160 Rroxscaffold_2G00132340 Rroxscaffold_2G00136720 Rroxscaffold_2G00152910 Rroxscaffold_3G00223160 Rroxscaffold_3G00223170 Rroxscaffold_3G00223520 Rroxscaffold_3G00230980 Rroxscaffold_3G00245030 Rroxscaffold_3G00259050 Rroxscaffold_3G00259060 Rroxscaffold_3G00259070 Rroxscaffold_3G00267470 Rroxscaffold_3G00272040 Rroxscaffold_3G00272440 Rroxscaffold_3G00272450 Rroxscaffold_4G00285860 Rroxscaffold_4G00285870 Rroxscaffold_4G00294380 Rroxscaffold_4G00294390 Rroxscaffold_4G00297890 Rroxscaffold_4G00298150 Rroxscaffold_4G00303090 Rroxscaffold_4G00306480 Rroxscaffold_4G00306680 Rroxscaffold_4G00310490 Rroxscaffold_4G00310630 Rroxscaffold_4G00310670 Rroxscaffold_4G00310680 Rroxscaffold_4G00310690 Rroxscaffold_4G00317930 Rroxscaffold_4G00320190 Rroxscaffold_4G00323370 Rroxscaffold_4G00323380 Rroxscaffold_4G00324200 Rroxscaffold_4G00331220 Rroxscaffold_5G00339230 Rroxscaffold_5G00341260 Rroxscaffold_5G00343120 Rroxscaffold_5G00345440 Rroxscaffold_5G00345450 Rroxscaffold_5G00353190 Rroxscaffold_5G00353420 Rroxscaffold_5G00356560 Rroxscaffold_5G00359790 Rroxscaffold_5G00381710 Rroxscaffold_5G00381720 Rroxscaffold_5G00386250 Rroxscaffold_5G00387520 Rroxscaffold_6G00390180 Rroxscaffold_6G00392810 Rroxscaffold_6G00401230 Rroxscaffold_6G00402640 Rroxscaffold_6G00405640 Rroxscaffold_6G00405650 Rroxscaffold_6G00405850 Rroxscaffold_6G00405860 Rroxscaffold_6G00412020 Rroxscaffold_6G00415690 Rroxscaffold_6G00415700 Rroxscaffold_7G00168110 Rroxscaffold_7G00178950 Rroxscaffold_7G00178960 Rroxscaffold_7G00193670 Rroxscaffold_7G00203020 Rroxscaffold_7G00203340 Rroxscaffold_7G00203550 Rroxscaffold_7G00207220 Rroxscaffold_7G00207250 Rroxscaffold_7G00207430 Rroxscaffold_7G00209310 Rroxscaffold_7G00211530 Rroxscaffold_7G00211540 Rroxscaffold_7G00214160 Rroxscaffold_7G00216040 Rroxscaffold_7G00216800
rosa_samantha Rh1AG276800 Rh1CG260400 Rh3CG366700
rosa_wichuraiana Rw1G001440 Rw3G029210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 325
AccI GTMKAC 2 cut(s) 851, 1169
AccII CGCG 2 cut(s) 521, 1283
AciI CCGC 7 cut(s) 122, 285, 437, 440, 643, 1283, 1307
AclWI GGATC 2 cut(s) 599, 665
AcoI YGGCCR 1 cut(s) 644
AcsI RAATTY 1 cut(s) 971
AcuI CTGAAG 1 cut(s) 80
AfaI GTAC 4 cut(s) 219, 277, 965, 1124
AfiI CCNNNNNNNGG 4 cut(s) 325, 341, 415, 1215
AgsI TTSAA 4 cut(s) 787, 1042, 1114, 1140
AjiI CACGTC 1 cut(s) 362
AjnI CCWGG 5 cut(s) 3, 168, 340, 646, 705
AluBI AGCT 6 cut(s) 296, 768, 949, 1058, 1222, 1258
AluI AGCT 6 cut(s) 296, 768, 949, 1058, 1222, 1258
Alw21I GWGCWC 2 cut(s) 770, 1101
Alw26I GTCTC 4 cut(s) 352, 742, 990, 1274
AlwI GGATC 2 cut(s) 599, 665
AoxI GGCC 4 cut(s) 195, 402, 644, 822
ApaI GGGCCC 1 cut(s) 406
ApeKI GCWGC 7 cut(s) 212, 617, 1055, 1058, 1061, 1222, 1255
ApoI RAATTY 1 cut(s) 971
Asp700I GAANNNNTTC 1 cut(s) 141
AspLEI GCGC 2 cut(s) 617, 1283
AspS9I GGNCC 5 cut(s) 344, 402, 403, 428, 926
AsuC2I CCSGG 1 cut(s) 253
AsuHPI GGTGA 5 cut(s) 340, 820, 899, 922, 1002
AsuNHI GCTAGC 2 cut(s) 287, 1291
AvaII GGWCC 3 cut(s) 344, 428, 926
BaeGI GKGCMC 1 cut(s) 406
BanII GRGCYC 2 cut(s) 406, 770
BbsI GAAGAC 3 cut(s) 68, 920, 1137
Bbv12I GWGCWC 2 cut(s) 770, 1101
BbvI GCAGC 7 cut(s) 224, 604, 1045, 1067, 1073, 1209, 1267
BccI CCATC 6 cut(s) 247, 537, 621, 690, 901, 1157
BceAI ACGGC 2 cut(s) 200, 884
BciT130I CCWGG 5 cut(s) 5, 170, 342, 648, 707
BciVI GTATCC 1 cut(s) 502
BclI TGATCA 1 cut(s) 381
BcnI CCSGG 1 cut(s) 253
BcoDI GTCTC 4 cut(s) 352, 742, 990, 1274
BfaI CTAG 7 cut(s) 146, 266, 288, 410, 537, 1089, 1292
BfmI CTRYAG 3 cut(s) 233, 305, 1059
BfoI RGCGCY 1 cut(s) 618
BfuI GTATCC 1 cut(s) 502
BglI GCCNNNNNGGC 1 cut(s) 869
BlpI GCTNAGC 1 cut(s) 769
BmcAI AGTACT 1 cut(s) 965
Bme1390I CCNGG 6 cut(s) 5, 170, 253, 342, 648, 707
Bme18I GGWCC 3 cut(s) 344, 428, 926
BmgBI CACGTC 1 cut(s) 362
BmgT120I GGNCC 5 cut(s) 344, 402, 403, 428, 926
BmiI GGNNCC 3 cut(s) 404, 429, 1242
BmrFI CCNGG 6 cut(s) 5, 170, 253, 342, 648, 707
BmsI GCATC 2 cut(s) 199, 850
BmtI GCTAGC 2 cut(s) 291, 1295
BpiI GAAGAC 3 cut(s) 68, 920, 1137
BplI GAGNNNNNCTC 2 cut(s) 40, 72
BpmI CTGGAG 1 cut(s) 1227
Bpu1102I GCTNAGC 1 cut(s) 769
BpuEI CTTGAG 4 cut(s) 566, 761, 797, 857
BpuMI CCSGG 1 cut(s) 253
BsaI GGTCTC 1 cut(s) 1274
BsaJI CCNNGG 4 cut(s) 3, 198, 251, 647
BsaWI WCCGGW 2 cut(s) 346, 1301
Bsc4I CCNNNNNNNGG 4 cut(s) 325, 341, 415, 1215
Bse118I RCCGGY 1 cut(s) 658
Bse1I ACTGG 3 cut(s) 393, 1169, 1244
BseBI CCWGG 5 cut(s) 5, 170, 342, 648, 707
BseDI CCNNGG 4 cut(s) 3, 198, 251, 647
BseGI GGATG 4 cut(s) 214, 239, 576, 1016
BseLI CCNNNNNNNGG 4 cut(s) 325, 341, 415, 1215
BseMII CTCAG 3 cut(s) 389, 504, 783
BseNI ACTGG 3 cut(s) 393, 1169, 1244
BseRI GAGGAG 3 cut(s) 327, 389, 740
BseSI GKGCMC 1 cut(s) 406
BseXI GCAGC 7 cut(s) 224, 604, 1045, 1067, 1073, 1209, 1267
BsgI GTGCAG 2 cut(s) 569, 607
Bsh1236I CGCG 2 cut(s) 521, 1283
Bsh1285I CGRYCG 1 cut(s) 1311
BshFI GGCC 4 cut(s) 197, 404, 646, 824
BsiEI CGRYCG 1 cut(s) 1311
BsiHKAI GWGCWC 2 cut(s) 770, 1101
BsiSI CCGG 4 cut(s) 253, 347, 659, 1302
BslFI GGGAC 3 cut(s) 441, 1040, 1307
BslI CCNNNNNNNGG 4 cut(s) 325, 341, 415, 1215
BsmAI GTCTC 4 cut(s) 352, 742, 990, 1274
BsmBI CGTCTC 1 cut(s) 352
BsmFI GGGAC 3 cut(s) 441, 1040, 1307
BsmI GAATGC 1 cut(s) 316
BsnI GGCC 4 cut(s) 197, 404, 646, 824
Bso31I GGTCTC 1 cut(s) 1274
Bsp120I GGGCCC 1 cut(s) 402
Bsp1286I GDGCHC 3 cut(s) 406, 770, 1101
Bsp143I GATC 5 cut(s) 381, 591, 670, 894, 943
Bsp1720I GCTNAGC 1 cut(s) 769
BspACI CCGC 7 cut(s) 122, 285, 437, 440, 643, 1283, 1307
BspANI GGCC 4 cut(s) 197, 404, 646, 824
BspCNI CTCAG 3 cut(s) 390, 505, 782
BspFNI CGCG 2 cut(s) 521, 1283
BspLI GGNNCC 3 cut(s) 404, 429, 1242
BspMAI CTGCAG 2 cut(s) 309, 1063
BspOI GCTAGC 2 cut(s) 291, 1295
BspPI GGATC 2 cut(s) 599, 665
BspQI GCTCTTC 1 cut(s) 758
BspTNI GGTCTC 1 cut(s) 1274
BsrFI RCCGGY 1 cut(s) 658
BsrI ACTGG 3 cut(s) 393, 1169, 1244
BssAI RCCGGY 1 cut(s) 658
BssECI CCNNGG 4 cut(s) 3, 198, 251, 647
BssMI GATC 5 cut(s) 381, 591, 670, 894, 943
BssNAI GTATAC 2 cut(s) 852, 1170
BssT1I CCWWGG 1 cut(s) 198
Bst1107I GTATAC 2 cut(s) 852, 1170
Bst2UI CCWGG 5 cut(s) 5, 170, 342, 648, 707
Bst4CI ACNGT 6 cut(s) 113, 280, 1014, 1122, 1268, 1299
Bst6I CTCTTC 3 cut(s) 360, 717, 758
BstAPI GCANNNNNTGC 1 cut(s) 448
BstC8I GCNNGC 4 cut(s) 289, 316, 660, 1293
BstDEI CTNAG 3 cut(s) 398, 513, 769
BstF5I GGATG 4 cut(s) 214, 239, 576, 1016
BstFNI CGCG 2 cut(s) 521, 1283
BstH2I RGCGCY 1 cut(s) 618
BstHHI GCGC 2 cut(s) 617, 1283
BstKTI GATC 5 cut(s) 384, 594, 673, 897, 946
BstMAI GTCTC 4 cut(s) 352, 742, 990, 1274
BstMBI GATC 5 cut(s) 381, 591, 670, 894, 943
BstMCI CGRYCG 1 cut(s) 1311
BstMWI GCNNNNNNNGC 5 cut(s) 221, 293, 448, 869, 1061
BstNI CCWGG 5 cut(s) 5, 170, 342, 648, 707
BstSCI CCNGG 6 cut(s) 3, 168, 251, 340, 646, 705
BstSFI CTRYAG 3 cut(s) 233, 305, 1059
BstSLI GKGCMC 1 cut(s) 406
BstUI CGCG 2 cut(s) 521, 1283
BstV1I GCAGC 7 cut(s) 224, 604, 1045, 1067, 1073, 1209, 1267
BstV2I GAAGAC 3 cut(s) 68, 920, 1137
BstX2I RGATCY 1 cut(s) 591
BstYI RGATCY 1 cut(s) 591
BstZ17I GTATAC 2 cut(s) 852, 1170
BsuI GTATCC 1 cut(s) 502
BsuRI GGCC 4 cut(s) 197, 404, 646, 824
BtgZI GCGATG 1 cut(s) 239
BtrI CACGTC 1 cut(s) 362
BtsCI GGATG 4 cut(s) 214, 239, 576, 1016
BtsI GCAGTG 2 cut(s) 557, 1197
BtsIMutI CAGTG 3 cut(s) 118, 557, 1197
Cac8I GCNNGC 4 cut(s) 289, 316, 660, 1293
CfoI GCGC 2 cut(s) 617, 1283
Cfr10I RCCGGY 1 cut(s) 658
Cfr13I GGNCC 5 cut(s) 344, 402, 403, 428, 926
CseI GACGC 1 cut(s) 527
Csp6I GTAC 4 cut(s) 218, 276, 964, 1123
CviAII CATG 1 cut(s) 875
CviQI GTAC 4 cut(s) 218, 276, 964, 1123
DdeI CTNAG 3 cut(s) 398, 513, 769
DpnI GATC 5 cut(s) 383, 593, 672, 896, 945
DpnII GATC 5 cut(s) 381, 591, 670, 894, 943
DraI TTTAAA 2 cut(s) 544, 748
EaeI YGGCCR 1 cut(s) 644
Eam1104I CTCTTC 3 cut(s) 360, 717, 758
EarI CTCTTC 3 cut(s) 360, 717, 758
EciI GGCGGA 1 cut(s) 137
Ecl136II GAGCTC 1 cut(s) 768
Eco130I CCWWGG 1 cut(s) 198
Eco24I GRGCYC 2 cut(s) 406, 770
Eco31I GGTCTC 1 cut(s) 1274
Eco32I GATATC 1 cut(s) 792
Eco47I GGWCC 3 cut(s) 344, 428, 926
Eco53kI GAGCTC 1 cut(s) 768
Eco57I CTGAAG 1 cut(s) 80
EcoICRI GAGCTC 1 cut(s) 768
EcoO109I RGGNCCY 2 cut(s) 402, 428
EcoRII CCWGG 5 cut(s) 3, 168, 340, 646, 705
EcoRV GATATC 1 cut(s) 792
EcoT14I CCWWGG 1 cut(s) 198
EcoT38I GRGCYC 2 cut(s) 406, 770
ErhI CCWWGG 1 cut(s) 198
Esp3I CGTCTC 1 cut(s) 352
FaeI CATG 1 cut(s) 878
FalI AAGNNNNNCTT 2 cut(s) 905, 937
FaqI GGGAC 3 cut(s) 441, 1040, 1307
FatI CATG 1 cut(s) 874
FauI CCCGC 2 cut(s) 444, 1276
FauNDI CATATG 1 cut(s) 856
FbaI TGATCA 1 cut(s) 381
FblI GTMKAC 2 cut(s) 851, 1169
FokI GGATG 4 cut(s) 221, 226, 563, 1003
FriOI GRGCYC 2 cut(s) 406, 770
FspBI CTAG 7 cut(s) 146, 266, 288, 410, 537, 1089, 1292
GlaI GCGC 2 cut(s) 616, 1282
GsuI CTGGAG 1 cut(s) 1227
HaeII RGCGCY 1 cut(s) 618
HaeIII GGCC 4 cut(s) 197, 404, 646, 824
HapII CCGG 4 cut(s) 253, 347, 659, 1302
HgaI GACGC 1 cut(s) 527
HhaI GCGC 2 cut(s) 617, 1283
Hin1II CATG 1 cut(s) 878
Hin6I GCGC 2 cut(s) 615, 1281
HinP1I GCGC 2 cut(s) 615, 1281
HincII GTYRAC 1 cut(s) 1264
HindII GTYRAC 1 cut(s) 1264
HinfI GANTC 4 cut(s) 55, 394, 1007, 1028
HpaII CCGG 4 cut(s) 253, 347, 659, 1302
HphI GGTGA 5 cut(s) 340, 820, 899, 922, 1002
Hpy166II GTNNAC 3 cut(s) 852, 1170, 1264
Hpy188I TCNGA 5 cut(s) 60, 386, 399, 567, 926
Hpy188III TCNNGA 5 cut(s) 465, 778, 941, 1042, 1111
Hpy8I GTNNAC 3 cut(s) 852, 1170, 1264
Hpy99I CGWCG 2 cut(s) 850, 1316
HpyAV CCTTC 6 cut(s) 65, 266, 835, 1143, 1151, 1224
HpyCH4III ACNGT 6 cut(s) 113, 280, 1014, 1122, 1268, 1299
HpyCH4IV ACGT 4 cut(s) 324, 361, 848, 1142
HpyCH4V TGCA 9 cut(s) 212, 307, 550, 588, 969, 1055, 1061, 1225, 1255
HpyF10VI GCNNNNNNNGC 5 cut(s) 221, 293, 448, 869, 1061
HpyF3I CTNAG 3 cut(s) 398, 513, 769
HpySE526I ACGT 4 cut(s) 324, 361, 848, 1142
Hsp92II CATG 1 cut(s) 878
HspAI GCGC 2 cut(s) 615, 1281
KroI GCCGGC 1 cut(s) 658
KroNI GCCGGC 1 cut(s) 660
Ksp22I TGATCA 1 cut(s) 381
Kzo9I GATC 5 cut(s) 381, 591, 670, 894, 943
LguI GCTCTTC 1 cut(s) 758
LmnI GCTCC 1 cut(s) 1246
Lsp1109I GCAGC 7 cut(s) 224, 604, 1045, 1067, 1073, 1209, 1267
LweI GCATC 2 cut(s) 199, 850
MaeI CTAG 7 cut(s) 146, 266, 288, 410, 537, 1089, 1292
MaeII ACGT 4 cut(s) 324, 361, 848, 1142
MaeIII GTNAC 4 cut(s) 17, 113, 554, 1008
MalI GATC 5 cut(s) 383, 593, 672, 896, 945
MboI GATC 5 cut(s) 381, 591, 670, 894, 943
MflI RGATCY 1 cut(s) 591
MhlI GDGCHC 3 cut(s) 406, 770, 1101
MluCI AATT 5 cut(s) 9, 151, 258, 782, 971
MlyI GAGTC 3 cut(s) 49, 1016, 1022
MmeI TCCRAC 1 cut(s) 1056
MroNI GCCGGC 1 cut(s) 658
MroXI GAANNNNTTC 1 cut(s) 141
MseI TTAA 3 cut(s) 543, 747, 807
MslI CAYNNNNRTG 1 cut(s) 1104
MspA1I CMGCKG 3 cut(s) 949, 1058, 1258
MspI CCGG 4 cut(s) 253, 347, 659, 1302
MspR9I CCNGG 6 cut(s) 5, 170, 253, 342, 648, 707
MssI GTTTAAAC 1 cut(s) 748
Mva1269I GAATGC 1 cut(s) 316
MvaI CCWGG 5 cut(s) 5, 170, 342, 648, 707
MvnI CGCG 2 cut(s) 521, 1283
MwoI GCNNNNNNNGC 5 cut(s) 221, 293, 448, 869, 1061
NaeI GCCGGC 1 cut(s) 660
NciI CCSGG 1 cut(s) 253
NdeI CATATG 1 cut(s) 856
NdeII GATC 5 cut(s) 381, 591, 670, 894, 943
NgoMIV GCCGGC 1 cut(s) 658
NheI GCTAGC 2 cut(s) 287, 1291
NlaIII CATG 1 cut(s) 878
NlaIV GGNNCC 3 cut(s) 404, 429, 1242
NmuCI GTSAC 3 cut(s) 113, 554, 1008
PciSI GCTCTTC 1 cut(s) 758
PcsI WCGNNNNNNNCGW 1 cut(s) 114
PctI GAATGC 1 cut(s) 316
PdiI GCCGGC 1 cut(s) 660
PdmI GAANNNNTTC 1 cut(s) 141
PfeI GAWTC 1 cut(s) 394
PflMI CCANNNNNTGG 1 cut(s) 325
PleI GAGTC 3 cut(s) 49, 1015, 1022
PmeI GTTTAAAC 1 cut(s) 748
PpsI GAGTC 3 cut(s) 49, 1015, 1022
PpuMI RGGWCCY 1 cut(s) 428
Psp124BI GAGCTC 1 cut(s) 770
Psp5II RGGWCCY 1 cut(s) 428
Psp6I CCWGG 5 cut(s) 3, 168, 340, 646, 705
PspGI CCWGG 5 cut(s) 3, 168, 340, 646, 705
PspN4I GGNNCC 3 cut(s) 404, 429, 1242
PspOMI GGGCCC 1 cut(s) 402
PspPI GGNCC 5 cut(s) 344, 402, 403, 428, 926
PspPPI RGGWCCY 1 cut(s) 428
PsrI GAACNNNNNNTAC 2 cut(s) 1106, 1138
PstI CTGCAG 2 cut(s) 309, 1063
PsuI RGATCY 1 cut(s) 591
PvuII CAGCTG 3 cut(s) 949, 1058, 1258
RsaI GTAC 4 cut(s) 219, 277, 965, 1124
RsaNI GTAC 4 cut(s) 218, 276, 964, 1123
RseI CAYNNNNRTG 1 cut(s) 1104
SacI GAGCTC 1 cut(s) 770
SapI GCTCTTC 1 cut(s) 758
SaqAI TTAA 3 cut(s) 543, 747, 807
Sau3AI GATC 5 cut(s) 381, 591, 670, 894, 943
Sau96I GGNCC 5 cut(s) 344, 402, 403, 428, 926
ScaI AGTACT 1 cut(s) 965
SchI GAGTC 3 cut(s) 49, 1016, 1022
ScrFI CCNGG 6 cut(s) 5, 170, 253, 342, 648, 707
SduI GDGCHC 3 cut(s) 406, 770, 1101
SfaNI GCATC 2 cut(s) 199, 850
SfcI CTRYAG 3 cut(s) 233, 305, 1059
SinI GGWCC 3 cut(s) 344, 428, 926
SmiMI CAYNNNNRTG 1 cut(s) 1104
SmlI CTYRAG 4 cut(s) 581, 776, 812, 836
SmoI CTYRAG 4 cut(s) 581, 776, 812, 836
Sse9I AATT 5 cut(s) 9, 151, 258, 782, 971
SsiI CCGC 7 cut(s) 122, 285, 437, 440, 643, 1283, 1307
SspI AATATT 1 cut(s) 481
SspMI CTAG 7 cut(s) 146, 266, 288, 410, 537, 1089, 1292
SstI GAGCTC 1 cut(s) 770
StyD4I CCNGG 6 cut(s) 3, 168, 251, 340, 646, 705
StyI CCWWGG 1 cut(s) 198
TaaI ACNGT 6 cut(s) 113, 280, 1014, 1122, 1268, 1299
TaiI ACGT 4 cut(s) 327, 364, 851, 1145
TaqI TCGA 1 cut(s) 453
TasI AATT 5 cut(s) 9, 151, 258, 782, 971
TatI WGTACW 1 cut(s) 963
TauI GCSGC 3 cut(s) 287, 442, 646
TfiI GAWTC 1 cut(s) 394
Tru1I TTAA 3 cut(s) 543, 747, 807
Tru9I TTAA 3 cut(s) 543, 747, 807
TscAI CASTG 3 cut(s) 118, 557, 1197
TseFI GTSAC 3 cut(s) 113, 554, 1008
TseI GCWGC 7 cut(s) 212, 617, 1055, 1058, 1061, 1222, 1255
Tsp45I GTSAC 3 cut(s) 113, 554, 1008
TspDTI ATGAA 3 cut(s) 84, 150, 735
TspGWI ACGGA 2 cut(s) 730, 932
TspRI CASTG 3 cut(s) 118, 557, 1197
Van91I CCANNNNNTGG 1 cut(s) 325
VpaK11BI GGWCC 3 cut(s) 344, 428, 926
XapI RAATTY 1 cut(s) 971
XmiI GTMKAC 2 cut(s) 851, 1169
XmnI GAANNNNTTC 1 cut(s) 141
XspI CTAG 7 cut(s) 146, 266, 288, 410, 537, 1089, 1292
ZrmI AGTACT 1 cut(s) 965
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.