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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 169 |
| AccII | CGCG | 1 cut(s) | 230 |
| AciI | CCGC | 5 cut(s) | 27, 90, 102, 169, 512 |
| AclWI | GGATC | 1 cut(s) | 470 |
| AcoI | YGGCCR | 1 cut(s) | 99 |
| AfaI | GTAC | 1 cut(s) | 289 |
| AgeI | ACCGGT | 1 cut(s) | 455 |
| AgsI | TTSAA | 2 cut(s) | 185, 281 |
| AjnI | CCWGG | 1 cut(s) | 558 |
| AluBI | AGCT | 1 cut(s) | 356 |
| AluI | AGCT | 1 cut(s) | 356 |
| Alw26I | GTCTC | 1 cut(s) | 107 |
| AlwI | GGATC | 1 cut(s) | 470 |
| Ama87I | CYCGRG | 1 cut(s) | 315 |
| AoxI | GGCC | 1 cut(s) | 99 |
| ApeKI | GCWGC | 2 cut(s) | 353, 356 |
| AsiGI | ACCGGT | 1 cut(s) | 455 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 531 |
| AspLEI | GCGC | 1 cut(s) | 240 |
| AspS9I | GGNCC | 1 cut(s) | 453 |
| AsuC2I | CCSGG | 1 cut(s) | 537 |
| AsuHPI | GGTGA | 1 cut(s) | 470 |
| AvaI | CYCGRG | 1 cut(s) | 315 |
| AvaII | GGWCC | 1 cut(s) | 453 |
| BaeGI | GKGCMC | 1 cut(s) | 135 |
| BbsI | GAAGAC | 1 cut(s) | 329 |
| BbvI | GCAGC | 2 cut(s) | 343, 365 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 250, 284 |
| BciT130I | CCWGG | 1 cut(s) | 560 |
| BcnI | CCSGG | 1 cut(s) | 537 |
| BcoDI | GTCTC | 1 cut(s) | 107 |
| BfaI | CTAG | 1 cut(s) | 327 |
| BfoI | RGCGCY | 1 cut(s) | 241 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 98 |
| BisI | GCNGC | 4 cut(s) | 102, 170, 354, 357 |
| BlsI | GCNGC | 4 cut(s) | 103, 171, 355, 358 |
| BmcAI | AGTACT | 1 cut(s) | 289 |
| Bme1390I | CCNGG | 2 cut(s) | 537, 560 |
| Bme18I | GGWCC | 1 cut(s) | 453 |
| BmeT110I | CYCGRG | 1 cut(s) | 315 |
| BmgT120I | GGNCC | 1 cut(s) | 453 |
| BmrFI | CCNGG | 2 cut(s) | 537, 560 |
| BpiI | GAAGAC | 1 cut(s) | 329 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 430, 462 |
| BpuMI | CCSGG | 1 cut(s) | 537 |
| BsaJI | CCNNGG | 3 cut(s) | 144, 393, 536 |
| BsaWI | WCCGGW | 1 cut(s) | 455 |
| Bse118I | RCCGGY | 1 cut(s) | 455 |
| Bse1I | ACTGG | 1 cut(s) | 295 |
| BseBI | CCWGG | 1 cut(s) | 560 |
| BseDI | CCNNGG | 3 cut(s) | 144, 393, 536 |
| BseMII | CTCAG | 3 cut(s) | 24, 93, 440 |
| BseNI | ACTGG | 1 cut(s) | 295 |
| BseRI | GAGGAG | 2 cut(s) | 125, 179 |
| BseSI | GKGCMC | 1 cut(s) | 135 |
| BseXI | GCAGC | 2 cut(s) | 343, 365 |
| BseYI | CCCAGC | 1 cut(s) | 21 |
| Bsh1236I | CGCG | 1 cut(s) | 230 |
| BshFI | GGCC | 1 cut(s) | 101 |
| BshTI | ACCGGT | 1 cut(s) | 455 |
| BsiHKCI | CYCGRG | 1 cut(s) | 315 |
| BsiSI | CCGG | 2 cut(s) | 456, 536 |
| BsmAI | GTCTC | 1 cut(s) | 107 |
| BsmI | GAATGC | 1 cut(s) | 157 |
| BsnI | GGCC | 1 cut(s) | 101 |
| BsoBI | CYCGRG | 1 cut(s) | 315 |
| Bsp1286I | GDGCHC | 1 cut(s) | 135 |
| Bsp143I | GATC | 3 cut(s) | 261, 475, 573 |
| Bsp68I | TCGCGA | 1 cut(s) | 230 |
| BspACI | CCGC | 5 cut(s) | 27, 90, 102, 169, 512 |
| BspANI | GGCC | 1 cut(s) | 101 |
| BspCNI | CTCAG | 3 cut(s) | 25, 92, 441 |
| BspFNI | CGCG | 1 cut(s) | 230 |
| BspHI | TCATGA | 1 cut(s) | 250 |
| BspPI | GGATC | 1 cut(s) | 470 |
| BsrBI | CCGCTC | 1 cut(s) | 169 |
| BsrFI | RCCGGY | 1 cut(s) | 455 |
| BsrI | ACTGG | 1 cut(s) | 295 |
| BssAI | RCCGGY | 1 cut(s) | 455 |
| BssECI | CCNNGG | 3 cut(s) | 144, 393, 536 |
| BssMI | GATC | 3 cut(s) | 261, 475, 573 |
| BssT1I | CCWWGG | 1 cut(s) | 393 |
| Bst2UI | CCWGG | 1 cut(s) | 560 |
| BstC8I | GCNNGC | 3 cut(s) | 27, 73, 174 |
| BstDEI | CTNAG | 3 cut(s) | 33, 79, 449 |
| BstFNI | CGCG | 1 cut(s) | 230 |
| BstH2I | RGCGCY | 1 cut(s) | 241 |
| BstHHI | GCGC | 1 cut(s) | 240 |
| BstKTI | GATC | 3 cut(s) | 264, 478, 576 |
| BstMAI | GTCTC | 1 cut(s) | 107 |
| BstMBI | GATC | 3 cut(s) | 261, 475, 573 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 89, 98, 244, 362 |
| BstNI | CCWGG | 1 cut(s) | 560 |
| BstSCI | CCNGG | 2 cut(s) | 535, 558 |
| BstSLI | GKGCMC | 1 cut(s) | 135 |
| BstUI | CGCG | 1 cut(s) | 230 |
| BstV1I | GCAGC | 2 cut(s) | 343, 365 |
| BstV2I | GAAGAC | 1 cut(s) | 329 |
| BsuRI | GGCC | 1 cut(s) | 101 |
| BtsI | GCAGTG | 2 cut(s) | 266, 422 |
| BtsIMutI | CAGTG | 2 cut(s) | 266, 422 |
| BtuMI | TCGCGA | 1 cut(s) | 230 |
| Cac8I | GCNNGC | 3 cut(s) | 27, 73, 174 |
| CciI | TCATGA | 1 cut(s) | 250 |
| CfoI | GCGC | 1 cut(s) | 240 |
| Cfr10I | RCCGGY | 1 cut(s) | 455 |
| Cfr13I | GGNCC | 1 cut(s) | 453 |
| CsiI | ACCWGGT | 1 cut(s) | 558 |
| Csp6I | GTAC | 1 cut(s) | 288 |
| CspAI | ACCGGT | 1 cut(s) | 455 |
| CviAII | CATG | 3 cut(s) | 8, 251, 589 |
| CviQI | GTAC | 1 cut(s) | 288 |
| DdeI | CTNAG | 3 cut(s) | 33, 79, 449 |
| DpnI | GATC | 3 cut(s) | 263, 477, 575 |
| DpnII | GATC | 3 cut(s) | 261, 475, 573 |
| EaeI | YGGCCR | 1 cut(s) | 99 |
| EciI | GGCGGA | 1 cut(s) | 527 |
| Eco130I | CCWWGG | 1 cut(s) | 393 |
| Eco47I | GGWCC | 1 cut(s) | 453 |
| Eco88I | CYCGRG | 1 cut(s) | 315 |
| EcoRII | CCWGG | 1 cut(s) | 558 |
| EcoT14I | CCWWGG | 1 cut(s) | 393 |
| ErhI | CCWWGG | 1 cut(s) | 393 |
| FaeI | CATG | 2 cut(s) | 11, 254 |
| FatI | CATG | 2 cut(s) | 7, 250 |
| FauI | CCCGC | 1 cut(s) | 34 |
| FauNDI | CATATG | 1 cut(s) | 349 |
| Fnu4HI | GCNGC | 4 cut(s) | 102, 170, 354, 357 |
| Fsp4HI | GCNGC | 4 cut(s) | 102, 170, 354, 357 |
| FspBI | CTAG | 1 cut(s) | 327 |
| GlaI | GCGC | 1 cut(s) | 239 |
| GluI | GCNGC | 4 cut(s) | 102, 170, 354, 357 |
| GsaI | CCCAGC | 1 cut(s) | 25 |
| HaeII | RGCGCY | 1 cut(s) | 241 |
| HaeIII | GGCC | 1 cut(s) | 101 |
| HapII | CCGG | 2 cut(s) | 456, 536 |
| HhaI | GCGC | 1 cut(s) | 240 |
| Hin1II | CATG | 2 cut(s) | 11, 254 |
| Hin6I | GCGC | 1 cut(s) | 238 |
| HinP1I | GCGC | 1 cut(s) | 238 |
| HincII | GTYRAC | 1 cut(s) | 565 |
| HindII | GTYRAC | 1 cut(s) | 565 |
| HinfI | GANTC | 1 cut(s) | 445 |
| HpaII | CCGG | 2 cut(s) | 456, 536 |
| HphI | GGTGA | 1 cut(s) | 470 |
| Hpy166II | GTNNAC | 2 cut(s) | 489, 565 |
| Hpy188I | TCNGA | 2 cut(s) | 450, 573 |
| Hpy188III | TCNNGA | 5 cut(s) | 229, 251, 278, 317, 577 |
| Hpy8I | GTNNAC | 2 cut(s) | 489, 565 |
| Hpy99I | CGWCG | 1 cut(s) | 509 |
| HpyAV | CCTTC | 2 cut(s) | 237, 455 |
| HpyCH4V | TGCA | 3 cut(s) | 200, 271, 353 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 89, 98, 244, 362 |
| HpyF3I | CTNAG | 3 cut(s) | 33, 79, 449 |
| Hsp92II | CATG | 2 cut(s) | 11, 254 |
| HspAI | GCGC | 1 cut(s) | 238 |
| Kzo9I | GATC | 3 cut(s) | 261, 475, 573 |
| LmnI | GCTCC | 1 cut(s) | 166 |
| LpnPI | CCDG | 9 cut(s) | 35, 57, 71, 276, 469, 483, 545, 549, 572 |
| Lsp1109I | GCAGC | 2 cut(s) | 343, 365 |
| MabI | ACCWGGT | 1 cut(s) | 558 |
| MaeI | CTAG | 1 cut(s) | 327 |
| MaeIII | GTNAC | 1 cut(s) | 407 |
| MalI | GATC | 3 cut(s) | 263, 477, 575 |
| MbiI | CCGCTC | 1 cut(s) | 169 |
| MboI | GATC | 3 cut(s) | 261, 475, 573 |
| MboII | GAAGA | 2 cut(s) | 334, 539 |
| MhlI | GDGCHC | 1 cut(s) | 135 |
| MluCI | AATT | 2 cut(s) | 399, 541 |
| MlyI | GAGTC | 1 cut(s) | 439 |
| MroXI | GAANNNNTTC | 1 cut(s) | 531 |
| MspA1I | CMGCKG | 1 cut(s) | 356 |
| MspI | CCGG | 2 cut(s) | 456, 536 |
| MspR9I | CCNGG | 2 cut(s) | 537, 560 |
| Mva1269I | GAATGC | 1 cut(s) | 157 |
| MvaI | CCWGG | 1 cut(s) | 560 |
| MvnI | CGCG | 1 cut(s) | 230 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 89, 98, 244, 362 |
| NciI | CCSGG | 1 cut(s) | 537 |
| NdeI | CATATG | 1 cut(s) | 349 |
| NdeII | GATC | 3 cut(s) | 261, 475, 573 |
| NlaIII | CATG | 2 cut(s) | 11, 254 |
| NmeAIII | GCCGAG | 1 cut(s) | 125 |
| NruI | TCGCGA | 1 cut(s) | 230 |
| PagI | TCATGA | 1 cut(s) | 250 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 152 |
| PctI | GAATGC | 1 cut(s) | 157 |
| PdmI | GAANNNNTTC | 1 cut(s) | 531 |
| PinAI | ACCGGT | 1 cut(s) | 455 |
| PkrI | GCNGC | 4 cut(s) | 103, 171, 355, 358 |
| PleI | GAGTC | 1 cut(s) | 439 |
| PpsI | GAGTC | 1 cut(s) | 439 |
| Psp6I | CCWGG | 1 cut(s) | 558 |
| PspFI | CCCAGC | 1 cut(s) | 21 |
| PspGI | CCWGG | 1 cut(s) | 558 |
| PspPI | GGNCC | 1 cut(s) | 453 |
| PvuII | CAGCTG | 1 cut(s) | 356 |
| RruI | TCGCGA | 1 cut(s) | 230 |
| RsaI | GTAC | 1 cut(s) | 289 |
| RsaNI | GTAC | 1 cut(s) | 288 |
| SatI | GCNGC | 4 cut(s) | 102, 170, 354, 357 |
| Sau3AI | GATC | 3 cut(s) | 261, 475, 573 |
| Sau96I | GGNCC | 1 cut(s) | 453 |
| ScaI | AGTACT | 1 cut(s) | 289 |
| SchI | GAGTC | 1 cut(s) | 439 |
| ScrFI | CCNGG | 2 cut(s) | 537, 560 |
| SduI | GDGCHC | 1 cut(s) | 135 |
| SetI | ASST | 4 cut(s) | 258, 307, 358, 564 |
| SexAI | ACCWGGT | 1 cut(s) | 558 |
| SinI | GGWCC | 1 cut(s) | 453 |
| Sse9I | AATT | 2 cut(s) | 399, 541 |
| SsiI | CCGC | 5 cut(s) | 27, 90, 102, 169, 512 |
| SspMI | CTAG | 1 cut(s) | 327 |
| StyD4I | CCNGG | 2 cut(s) | 535, 558 |
| StyI | CCWWGG | 1 cut(s) | 393 |
| TaqI | TCGA | 1 cut(s) | 260 |
| TasI | AATT | 2 cut(s) | 399, 541 |
| TatI | WGTACW | 1 cut(s) | 287 |
| TauI | GCSGC | 2 cut(s) | 104, 172 |
| TscAI | CASTG | 2 cut(s) | 273, 429 |
| TseI | GCWGC | 2 cut(s) | 353, 356 |
| TspDTI | ATGAA | 3 cut(s) | 222, 239, 540 |
| TspRI | CASTG | 2 cut(s) | 273, 429 |
| VpaK11BI | GGWCC | 1 cut(s) | 453 |
| XmnI | GAANNNNTTC | 1 cut(s) | 531 |
| XspI | CTAG | 1 cut(s) | 327 |
| ZrmI | AGTACT | 1 cut(s) | 289 |