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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 212 |
| AclWI | GGATC | 1 cut(s) | 346 |
| AcoI | YGGCCR | 1 cut(s) | 132 |
| AcsI | RAATTY | 1 cut(s) | 261 |
| AcuI | CTGAAG | 1 cut(s) | 186 |
| AfaI | GTAC | 2 cut(s) | 86, 106 |
| AgsI | TTSAA | 1 cut(s) | 250 |
| AjnI | CCWGG | 2 cut(s) | 91, 177 |
| AluBI | AGCT | 2 cut(s) | 123, 256 |
| AluI | AGCT | 2 cut(s) | 123, 256 |
| AlwI | GGATC | 1 cut(s) | 346 |
| AoxI | GGCC | 3 cut(s) | 132, 213, 294 |
| ApeKI | GCWGC | 2 cut(s) | 113, 371 |
| ApoI | RAATTY | 1 cut(s) | 261 |
| AspS9I | GGNCC | 1 cut(s) | 175 |
| AsuHPI | GGTGA | 1 cut(s) | 394 |
| AvaII | GGWCC | 1 cut(s) | 175 |
| BanII | GRGCYC | 1 cut(s) | 276 |
| BauI | CACGAG | 1 cut(s) | 347 |
| BbsI | GAAGAC | 1 cut(s) | 392 |
| BbvI | GCAGC | 2 cut(s) | 125, 358 |
| BccI | CCATC | 4 cut(s) | 162, 250, 286, 373 |
| BciT130I | CCWGG | 2 cut(s) | 93, 179 |
| BfmI | CTRYAG | 1 cut(s) | 108 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 341 |
| BisI | GCNGC | 3 cut(s) | 114, 213, 372 |
| BlsI | GCNGC | 3 cut(s) | 115, 214, 373 |
| Bme1390I | CCNGG | 2 cut(s) | 93, 179 |
| Bme18I | GGWCC | 1 cut(s) | 175 |
| BmgT120I | GGNCC | 1 cut(s) | 175 |
| BmiI | GGNNCC | 1 cut(s) | 273 |
| BmrFI | CCNGG | 2 cut(s) | 93, 179 |
| BmsI | GCATC | 3 cut(s) | 46, 46, 322 |
| BpiI | GAAGAC | 1 cut(s) | 392 |
| BpmI | CTGGAG | 2 cut(s) | 58, 329 |
| Bpu10I | CCTNAGC | 1 cut(s) | 119 |
| Bsa29I | ATCGAT | 1 cut(s) | 290 |
| BsaAI | YACGTR | 1 cut(s) | 88 |
| BsaJI | CCNNGG | 1 cut(s) | 267 |
| BsaWI | WCCGGW | 1 cut(s) | 227 |
| Bse118I | RCCGGY | 1 cut(s) | 130 |
| Bse1I | ACTGG | 1 cut(s) | 312 |
| BseBI | CCWGG | 2 cut(s) | 93, 179 |
| BseCI | ATCGAT | 1 cut(s) | 290 |
| BseDI | CCNNGG | 1 cut(s) | 267 |
| BseGI | GGATG | 2 cut(s) | 187, 242 |
| BseMII | CTCAG | 2 cut(s) | 58, 110 |
| BseNI | ACTGG | 1 cut(s) | 312 |
| BseRI | GAGGAG | 2 cut(s) | 32, 284 |
| BseXI | GCAGC | 2 cut(s) | 125, 358 |
| BshFI | GGCC | 3 cut(s) | 134, 215, 296 |
| BshVI | ATCGAT | 1 cut(s) | 290 |
| BsiSI | CCGG | 2 cut(s) | 131, 228 |
| BsiWI | CGTACG | 1 cut(s) | 84 |
| BsmI | GAATGC | 1 cut(s) | 73 |
| BsnI | GGCC | 3 cut(s) | 134, 215, 296 |
| Bsp1286I | GDGCHC | 1 cut(s) | 276 |
| Bsp143I | GATC | 2 cut(s) | 351, 366 |
| BspACI | CCGC | 1 cut(s) | 212 |
| BspANI | GGCC | 3 cut(s) | 134, 215, 296 |
| BspCNI | CTCAG | 2 cut(s) | 57, 111 |
| BspDI | ATCGAT | 1 cut(s) | 290 |
| BspLI | GGNNCC | 1 cut(s) | 273 |
| BspPI | GGATC | 1 cut(s) | 346 |
| BsrFI | RCCGGY | 1 cut(s) | 130 |
| BsrI | ACTGG | 1 cut(s) | 312 |
| BssAI | RCCGGY | 1 cut(s) | 130 |
| BssECI | CCNNGG | 1 cut(s) | 267 |
| BssMI | GATC | 2 cut(s) | 351, 366 |
| BssSI | CACGAG | 1 cut(s) | 347 |
| Bst2BI | CACGAG | 1 cut(s) | 347 |
| Bst2UI | CCWGG | 2 cut(s) | 93, 179 |
| Bst4CI | ACNGT | 1 cut(s) | 109 |
| Bst6I | CTCTTC | 1 cut(s) | 183 |
| BstBAI | YACGTR | 1 cut(s) | 88 |
| BstDEI | CTNAG | 2 cut(s) | 44, 119 |
| BstF5I | GGATG | 2 cut(s) | 187, 242 |
| BstKTI | GATC | 2 cut(s) | 354, 369 |
| BstMBI | GATC | 2 cut(s) | 351, 366 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 341 |
| BstNI | CCWGG | 2 cut(s) | 93, 179 |
| BstSCI | CCNGG | 2 cut(s) | 91, 177 |
| BstSFI | CTRYAG | 1 cut(s) | 108 |
| BstV1I | GCAGC | 2 cut(s) | 125, 358 |
| BstV2I | GAAGAC | 1 cut(s) | 392 |
| BstX2I | RGATCY | 1 cut(s) | 351 |
| BstYI | RGATCY | 1 cut(s) | 351 |
| Bsu15I | ATCGAT | 1 cut(s) | 290 |
| BsuRI | GGCC | 3 cut(s) | 134, 215, 296 |
| BsuTUI | ATCGAT | 1 cut(s) | 290 |
| BtsCI | GGATG | 2 cut(s) | 187, 242 |
| Cfr10I | RCCGGY | 1 cut(s) | 130 |
| Cfr13I | GGNCC | 1 cut(s) | 175 |
| ClaI | ATCGAT | 1 cut(s) | 290 |
| Csp6I | GTAC | 2 cut(s) | 85, 105 |
| CviJI | RGCY | 8 cut(s) | 116, 123, 134, 215, 256, 274, 296, 344 |
| CviKI_1 | RGCY | 8 cut(s) | 116, 123, 134, 215, 256, 274, 296, 344 |
| CviQI | GTAC | 2 cut(s) | 85, 105 |
| DdeI | CTNAG | 2 cut(s) | 44, 119 |
| DpnI | GATC | 2 cut(s) | 353, 368 |
| DpnII | GATC | 2 cut(s) | 351, 366 |
| EaeI | YGGCCR | 1 cut(s) | 132 |
| Eam1104I | CTCTTC | 1 cut(s) | 183 |
| EarI | CTCTTC | 1 cut(s) | 183 |
| Eco24I | GRGCYC | 1 cut(s) | 276 |
| Eco47I | GGWCC | 1 cut(s) | 175 |
| Eco57I | CTGAAG | 1 cut(s) | 186 |
| EcoRII | CCWGG | 2 cut(s) | 91, 177 |
| EcoT38I | GRGCYC | 1 cut(s) | 276 |
| FaiI | YATR | 5 cut(s) | 159, 209, 322, 324, 330 |
| Fnu4HI | GCNGC | 3 cut(s) | 114, 213, 372 |
| FokI | GGATG | 2 cut(s) | 194, 229 |
| FriOI | GRGCYC | 1 cut(s) | 276 |
| Fsp4HI | GCNGC | 3 cut(s) | 114, 213, 372 |
| GluI | GCNGC | 3 cut(s) | 114, 213, 372 |
| GsuI | CTGGAG | 2 cut(s) | 58, 329 |
| HaeIII | GGCC | 3 cut(s) | 134, 215, 296 |
| HapII | CCGG | 2 cut(s) | 131, 228 |
| HincII | GTYRAC | 1 cut(s) | 225 |
| HindII | GTYRAC | 1 cut(s) | 225 |
| HinfI | GANTC | 1 cut(s) | 238 |
| HpaI | GTTAAC | 1 cut(s) | 225 |
| HpaII | CCGG | 2 cut(s) | 131, 228 |
| HphI | GGTGA | 1 cut(s) | 394 |
| Hpy166II | GTNNAC | 2 cut(s) | 98, 225 |
| Hpy188I | TCNGA | 2 cut(s) | 47, 268 |
| Hpy188III | TCNNGA | 2 cut(s) | 75, 347 |
| Hpy8I | GTNNAC | 2 cut(s) | 98, 225 |
| HpyCH4III | ACNGT | 1 cut(s) | 109 |
| HpyCH4IV | ACGT | 2 cut(s) | 83, 87 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 341 |
| HpyF3I | CTNAG | 2 cut(s) | 44, 119 |
| HpySE526I | ACGT | 2 cut(s) | 83, 87 |
| KspAI | GTTAAC | 1 cut(s) | 225 |
| Kzo9I | GATC | 2 cut(s) | 351, 366 |
| LmnI | GCTCC | 1 cut(s) | 271 |
| LpnPI | CCDG | 9 cut(s) | 78, 88, 105, 131, 144, 164, 191, 241, 293 |
| Lsp1109I | GCAGC | 2 cut(s) | 125, 358 |
| LweI | GCATC | 3 cut(s) | 46, 46, 322 |
| MaeII | ACGT | 2 cut(s) | 83, 87 |
| MalI | GATC | 2 cut(s) | 353, 368 |
| MboI | GATC | 2 cut(s) | 351, 366 |
| MboII | GAAGA | 4 cut(s) | 76, 179, 200, 388 |
| MflI | RGATCY | 1 cut(s) | 351 |
| MhlI | GDGCHC | 1 cut(s) | 276 |
| MluCI | AATT | 1 cut(s) | 261 |
| MnlI | CCTC | 7 cut(s) | 53, 54, 71, 82, 184, 190, 262 |
| MseI | TTAA | 2 cut(s) | 224, 279 |
| MspA1I | CMGCKG | 1 cut(s) | 256 |
| MspI | CCGG | 2 cut(s) | 131, 228 |
| MspR9I | CCNGG | 2 cut(s) | 93, 179 |
| Mva1269I | GAATGC | 1 cut(s) | 73 |
| MvaI | CCWGG | 2 cut(s) | 93, 179 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 341 |
| NdeII | GATC | 2 cut(s) | 351, 366 |
| NlaIV | GGNNCC | 1 cut(s) | 273 |
| PctI | GAATGC | 1 cut(s) | 73 |
| PfeI | GAWTC | 1 cut(s) | 238 |
| Pfl23II | CGTACG | 1 cut(s) | 84 |
| PfoI | TCCNGGA | 1 cut(s) | 177 |
| PkrI | GCNGC | 3 cut(s) | 115, 214, 373 |
| Ppu21I | YACGTR | 1 cut(s) | 88 |
| Psp6I | CCWGG | 2 cut(s) | 91, 177 |
| PspGI | CCWGG | 2 cut(s) | 91, 177 |
| PspLI | CGTACG | 1 cut(s) | 84 |
| PspN4I | GGNNCC | 1 cut(s) | 273 |
| PspPI | GGNCC | 1 cut(s) | 175 |
| PsuI | RGATCY | 1 cut(s) | 351 |
| PvuII | CAGCTG | 1 cut(s) | 256 |
| RsaI | GTAC | 2 cut(s) | 86, 106 |
| RsaNI | GTAC | 2 cut(s) | 85, 105 |
| SaqAI | TTAA | 2 cut(s) | 224, 279 |
| SatI | GCNGC | 3 cut(s) | 114, 213, 372 |
| Sau3AI | GATC | 2 cut(s) | 351, 366 |
| Sau96I | GGNCC | 1 cut(s) | 175 |
| ScrFI | CCNGG | 2 cut(s) | 93, 179 |
| SduI | GDGCHC | 1 cut(s) | 276 |
| SetI | ASST | 6 cut(s) | 86, 90, 97, 125, 140, 258 |
| SfaNI | GCATC | 3 cut(s) | 46, 46, 322 |
| SfcI | CTRYAG | 1 cut(s) | 108 |
| SinI | GGWCC | 1 cut(s) | 175 |
| Sse9I | AATT | 1 cut(s) | 261 |
| SsiI | CCGC | 1 cut(s) | 212 |
| StyD4I | CCNGG | 2 cut(s) | 91, 177 |
| TaaI | ACNGT | 1 cut(s) | 109 |
| TaiI | ACGT | 2 cut(s) | 86, 90 |
| TaqI | TCGA | 2 cut(s) | 33, 290 |
| TasI | AATT | 1 cut(s) | 261 |
| TauI | GCSGC | 1 cut(s) | 215 |
| TfiI | GAWTC | 1 cut(s) | 238 |
| Tru1I | TTAA | 2 cut(s) | 224, 279 |
| Tru9I | TTAA | 2 cut(s) | 224, 279 |
| TseI | GCWGC | 2 cut(s) | 113, 371 |
| TspDTI | ATGAA | 1 cut(s) | 201 |
| VpaK11BI | GGWCC | 1 cut(s) | 175 |
| XapI | RAATTY | 1 cut(s) | 261 |