Rmu_sc0011136.1_g000012

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011136.1
OG0000057
Physical Location & Seq
Forward (+)
62432 .. 64967
2536 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011136.1_g000012.1.cds

Sequence Viewer

Length: 1596 bp
atgcttcagttcttagtttcagaagcttctgatgctagcttggcgcggcgcgtggcggcgcgtcggtggcgatctggaggcggtcagagtgtcactactaatcaggccagtgtgcctgttatcactaccgctgtctccaatatagtgggaagtggagaaagagaggctttcgttgcgaagcctattccaataggagtgacctccgaggtgaggttcgcgatcatcatggagaatattgaaaatcatcgcaagaagatagcagctgattttgaaagggaaaccgtgaaaacagcccagttcatacgcgaactagaccagcgcattacccaacatgcagaggatactaagcaacaaatcgcgcaatcagagaatgcagtaagggctcatgccacgggtatcgctagtgagcagaatcagtgccagaaagagatcatggaggctatcgcgaaccaaaccaagcagactgcatcagatatggcaggtcttcgcaaggatggcgctaccctcgcaaccggggtggccatgcagaaagccgaattgaaccaggcaagagaagttagcaacaataccgctactccttccgcaaccgttgctgctacaccactgaaaaataaagagcaagcactggttatcggcgccagcaaagaaaattccacctcaccatgcggacagaccaccagacagaagcatcaggcctcgaaagttggtggaacctcgtccaactctgctacatttgttcaatacgacagcgatggggcagaaaacatataccaagaactgccaggaagttattacgggattgaccagacaggagaggggacagcgactgcaaaccaagcaatacctttgcaggctgctcgccagactgtggcgacaccacctcctcctctgggcccagaatatgtaagacgtgatgaggtagagaagatgatcaggttggctaatcctagggcccaactggatggggggaagacactgaggatgcggcaacctatttggccaggtttaagatgcaatgcggccagtaccaaaatgatgatatcctcaaatgcaagatctttggtacttctctctcgggagctgcctttagatgagtccgctgtggcttatcttccgcgcttccaaattcagaaagccaagctgaacgtcatcgtgcccttagaaagagttagtcaacctggcggtcaaaggtttggaacctcgtcagcgaaagaagcaacatggcagcatgatccagtcaatgggagaactcatcacagaggtggcaacttcgaacatctcctcagagaaacagacgcaaggaagaatgcatccaaaggaacatatgtaccaggaaaacatcgcaccgtagcggccctgagctatcagccggctacctatgacccttactaccatcatcacagtgaagaagtgattcaggatgacgacgaggaagaggagaatgatatcgctgcttatgaactaaccggaaggaagaatccagccctgaagcaactgaaaatttccaaggaacctgtcaagctcaaatcgatggccttcaccaaacctgaattcgcgacatatacatatgatgccaacaaggcacatgagatatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

531

Amino Acids

58.17

Weight (kDa)

8.82

Isoelectric Point (pI)

39.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000057)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00341 FvH4_2g18201 FvH4_2g24491 FvH4_2g24511 FvH4_3g22961 FvH4_3g33532 FvH4_3g33534 FvH4_4g05275 FvH4_4g12372 FvH4_5g20143 FvH4_7g12392
pyrus_communis pycom12g16120
rosa_chinensis RchiOBHm_Chr5g0023531 RchiOBHm_Chr6g0271201
rosa_laevigata RLG00000030639
rosa_multiflora Rmu_co8016136.1_g000001 Rmu_co8027180.1_g000001 Rmu_co8041016.1_g000001 Rmu_co8052812.1_g000001 Rmu_co8152468.1_g000001 Rmu_co8165796.1_g000001 Rmu_co8170214.1_g000001 Rmu_co8227433.1_g000001 Rmu_co8241379.1_g000001 Rmu_co8254305.1_g000001 Rmu_co8258647.1_g000001 Rmu_co8265535.1_g000002 Rmu_co8276845.1_g000001 Rmu_co8296303.1_g000001 Rmu_co8304827.1_g000001 Rmu_co8308345.1_g000001 Rmu_co8320493.1_g000002 Rmu_co8326955.1_g000001 Rmu_co8331007.1_g000001 Rmu_co8335625.1_g000001 Rmu_co8354465.1_g000001 Rmu_co8360201.1_g000001 Rmu_co8362075.1_g000002 Rmu_co8362991.1_g000001 Rmu_co8364567.1_g000001 Rmu_co8365273.1_g000001 Rmu_co8387267.1_g000001 Rmu_co8395251.1_g000002 Rmu_co8396677.1_g000001 Rmu_co8457659.1_g000001 Rmu_co8478117.1_g000001 Rmu_co8487163.1_g000001 Rmu_co8498169.1_g000001 Rmu_sc0000029.1_g000022 Rmu_sc0000063.1_g000007 Rmu_sc0000112.1_g000020 Rmu_sc0000146.1_g000006 Rmu_sc0000245.1_g000015 Rmu_sc0000276.1_g000036 Rmu_sc0000334.1_g000033 Rmu_sc0000334.1_g000034 Rmu_sc0000434.1_g000019 Rmu_sc0000441.1_g000118 Rmu_sc0000533.1_g000054 Rmu_sc0000533.1_g000055 Rmu_sc0000595.1_g000041 Rmu_sc0000663.1_g000019 Rmu_sc0000673.1_g000002 Rmu_sc0000698.1_g000102 Rmu_sc0000745.1_g000007 Rmu_sc0000768.1_g000018 Rmu_sc0000811.1_g000012 Rmu_sc0000826.1_g000009 Rmu_sc0000826.1_g000011 Rmu_sc0001051.1_g000042 Rmu_sc0001051.1_g000043 Rmu_sc0001148.1_g000014 Rmu_sc0001198.1_g000021 Rmu_sc0001227.1_g000008 Rmu_sc0001250.1_g000028 Rmu_sc0001395.1_g000019 Rmu_sc0001395.1_g000020 Rmu_sc0001396.1_g000002 Rmu_sc0001424.1_g000007 Rmu_sc0001455.1_g000025 Rmu_sc0001455.1_g000029 Rmu_sc0001499.1_g000036 Rmu_sc0001539.1_g000001 Rmu_sc0001562.1_g000027 Rmu_sc0001563.1_g000024 Rmu_sc0001719.1_g000022 Rmu_sc0001796.1_g000008 Rmu_sc0001884.1_g000022 Rmu_sc0001903.1_g000018 Rmu_sc0002041.1_g000012 Rmu_sc0002096.1_g000002 Rmu_sc0002126.1_g000027 Rmu_sc0002181.1_g000010 Rmu_sc0002259.1_g000004 Rmu_sc0002279.1_g000018 Rmu_sc0002312.1_g000060 Rmu_sc0002383.1_g000011 Rmu_sc0002401.1_g000012 Rmu_sc0002509.1_g000028 Rmu_sc0002569.1_g000008 Rmu_sc0002587.1_g000037 Rmu_sc0002665.1_g000006 Rmu_sc0002698.1_g000018 Rmu_sc0002724.1_g000002 Rmu_sc0002727.1_g000011 Rmu_sc0002927.1_g000055 Rmu_sc0002927.1_g000056 Rmu_sc0002943.1_g000009 Rmu_sc0002943.1_g000023 Rmu_sc0002998.1_g000001 Rmu_sc0003089.1_g000036 Rmu_sc0003127.1_g000022 Rmu_sc0003127.1_g000040 Rmu_sc0003207.1_g000010 Rmu_sc0003207.1_g000011 Rmu_sc0003275.1_g000034 Rmu_sc0003275.1_g000036 Rmu_sc0003337.1_g000047 Rmu_sc0003376.1_g000004 Rmu_sc0003522.1_g000024 Rmu_sc0003613.1_g000007 Rmu_sc0003708.1_g000026 Rmu_sc0003784.1_g000018 Rmu_sc0004079.1_g000005 Rmu_sc0004092.1_g000017 Rmu_sc0004168.1_g000058 Rmu_sc0004174.1_g000019 Rmu_sc0004199.1_g000049 Rmu_sc0004230.1_g000005 Rmu_sc0004283.1_g000021 Rmu_sc0004283.1_g000022 Rmu_sc0004314.1_g000017 Rmu_sc0004538.1_g000006 Rmu_sc0004542.1_g000011 Rmu_sc0004602.1_g000024 Rmu_sc0004641.1_g000006 Rmu_sc0004862.1_g000011 Rmu_sc0004941.1_g000043 Rmu_sc0005003.1_g000003 Rmu_sc0005112.1_g000018 Rmu_sc0005144.1_g000014 Rmu_sc0005266.1_g000014 Rmu_sc0005418.1_g000004 Rmu_sc0005627.1_g000006 Rmu_sc0005652.1_g000022 Rmu_sc0005747.1_g000032 Rmu_sc0005982.1_g000013 Rmu_sc0006050.1_g000017 Rmu_sc0006059.1_g000035 Rmu_sc0006128.1_g000002 Rmu_sc0006228.1_g000009 Rmu_sc0006243.1_g000009 Rmu_sc0006300.1_g000004 Rmu_sc0006463.1_g000007 Rmu_sc0006579.1_g000016 Rmu_sc0006595.1_g000011 Rmu_sc0006624.1_g000006 Rmu_sc0006624.1_g000007 Rmu_sc0006624.1_g000008 Rmu_sc0006674.1_g000025 Rmu_sc0006792.1_g000013 Rmu_sc0006872.1_g000022 Rmu_sc0006984.1_g000009 Rmu_sc0006984.1_g000010 Rmu_sc0006986.1_g000011 Rmu_sc0007016.1_g000001 Rmu_sc0007221.1_g000006 Rmu_sc0007222.1_g000005 Rmu_sc0007222.1_g000006 Rmu_sc0007251.1_g000001 Rmu_sc0007777.1_g000037 Rmu_sc0007826.1_g000018 Rmu_sc0008053.1_g000015 Rmu_sc0008502.1_g000006 Rmu_sc0008659.1_g000009 Rmu_sc0009045.1_g000009 Rmu_sc0009045.1_g000010 Rmu_sc0009060.1_g000012 Rmu_sc0009360.1_g000024 Rmu_sc0009431.1_g000001 Rmu_sc0009606.1_g000014 Rmu_sc0009774.1_g000001 Rmu_sc0009844.1_g000014 Rmu_sc0010313.1_g000001 Rmu_sc0010454.1_g000008 Rmu_sc0010543.1_g000016 Rmu_sc0010900.1_g000002 Rmu_sc0010925.1_g000009 Rmu_sc0011136.1_g000012 Rmu_sc0011534.1_g000004 Rmu_sc0011809.1_g000007 Rmu_sc0011917.1_g000005 Rmu_sc0012103.1_g000001 Rmu_sc0012287.1_g000001 Rmu_sc0012303.1_g000007 Rmu_sc0012344.1_g000009 Rmu_sc0012674.1_g000007 Rmu_sc0012686.1_g000001 Rmu_sc0012742.1_g000005 Rmu_sc0012746.1_g000026 Rmu_sc0012746.1_g000027 Rmu_sc0013419.1_g000008 Rmu_sc0014866.1_g000004 Rmu_sc0015325.1_g000011 Rmu_sc0015486.1_g000005 Rmu_sc0015651.1_g000002 Rmu_sc0015783.1_g000001 Rmu_sc0016387.1_g000009 Rmu_sc0017518.1_g000005 Rmu_sc0018480.1_g000001 Rmu_sc0018537.1_g000003 Rmu_sc0019200.1_g000002 Rmu_sc0019544.1_g000014 Rmu_sc0019544.1_g000015 Rmu_sc0019873.1_g000001 Rmu_sc0020392.1_g000001 Rmu_sc0020466.1_g000001 Rmu_sc0022008.1_g000001 Rmu_sc0022008.1_g000002 Rmu_sc0022274.1_g000001 Rmu_sc0023644.1_g000005 Rmu_sc0024657.1_g000001 Rmu_sc0024721.1_g000003 Rmu_sc0025790.1_g000001 Rmu_sc0026866.1_g000001 Rmu_sc0027363.1_g000002 Rmu_sc0027485.1_g000001 Rmu_sc0028394.1_g000001 Rmu_sc0033121.1_g000002 Rmu_sc0033838.1_g000001 Rmu_sc0035536.1_g000001 Rmu_sc0036296.1_g000001 Rmu_sc0036297.1_g000001 Rmu_sc0036298.1_g000001 Rmu_sc0036797.1_g000001 Rmu_sc0037010.1_g000001 Rmu_sc0037444.1_g000002 Rmu_sc0039012.1_g000002 Rmu_sc0040172.1_g000001 Rmu_sc0042083.1_g000001 Rmu_ssc0000018.1_g000001 Rmu_ssc0000171.1_g000032 Rmu_ssc0000213.1_g000064 Rmu_ssc0000213.1_g000096 Rmu_ssc0000262.1_g000017 Rmu_ssc0000295.1_g000036 Rmu_ssc0000343.1_g000008 Rmu_ssc0000398.1_g000003 Rmu_ssc0000400.1_g000085 Rmu_ssc0000438.1_g000007 Rmu_ssc0000478.1_g000003
rosa_roxburghii Rroxscaffold_166G00440710 Rroxscaffold_166G00440720 Rroxscaffold_174G00435300 Rroxscaffold_174G00435310 Rroxscaffold_177G00434290 Rroxscaffold_177G00434300 Rroxscaffold_177G00434310 Rroxscaffold_178G00437310 Rroxscaffold_1G00002500 Rroxscaffold_1G00004730 Rroxscaffold_1G00008660 Rroxscaffold_1G00008670 Rroxscaffold_1G00008680 Rroxscaffold_1G00008690 Rroxscaffold_1G00010260 Rroxscaffold_1G00015670 Rroxscaffold_1G00021140 Rroxscaffold_1G00024380 Rroxscaffold_1G00032420 Rroxscaffold_1G00050600 Rroxscaffold_1G00050610 Rroxscaffold_1G00055970 Rroxscaffold_1G00066220 Rroxscaffold_2G00085370 Rroxscaffold_2G00092350 Rroxscaffold_2G00092360 Rroxscaffold_2G00093350 Rroxscaffold_2G00097090 Rroxscaffold_2G00108040 Rroxscaffold_2G00109970 Rroxscaffold_2G00111470 Rroxscaffold_2G00111480 Rroxscaffold_2G00112000 Rroxscaffold_2G00112060 Rroxscaffold_2G00129160 Rroxscaffold_2G00132340 Rroxscaffold_2G00136720 Rroxscaffold_2G00152910 Rroxscaffold_3G00223160 Rroxscaffold_3G00223170 Rroxscaffold_3G00223520 Rroxscaffold_3G00230980 Rroxscaffold_3G00245030 Rroxscaffold_3G00259050 Rroxscaffold_3G00259060 Rroxscaffold_3G00259070 Rroxscaffold_3G00267470 Rroxscaffold_3G00272040 Rroxscaffold_3G00272440 Rroxscaffold_3G00272450 Rroxscaffold_4G00285860 Rroxscaffold_4G00285870 Rroxscaffold_4G00294380 Rroxscaffold_4G00294390 Rroxscaffold_4G00297890 Rroxscaffold_4G00298150 Rroxscaffold_4G00303090 Rroxscaffold_4G00306480 Rroxscaffold_4G00306680 Rroxscaffold_4G00310490 Rroxscaffold_4G00310630 Rroxscaffold_4G00310670 Rroxscaffold_4G00310680 Rroxscaffold_4G00310690 Rroxscaffold_4G00317930 Rroxscaffold_4G00320190 Rroxscaffold_4G00323370 Rroxscaffold_4G00323380 Rroxscaffold_4G00324200 Rroxscaffold_4G00331220 Rroxscaffold_5G00339230 Rroxscaffold_5G00341260 Rroxscaffold_5G00343120 Rroxscaffold_5G00345440 Rroxscaffold_5G00345450 Rroxscaffold_5G00353190 Rroxscaffold_5G00353420 Rroxscaffold_5G00356560 Rroxscaffold_5G00359790 Rroxscaffold_5G00381710 Rroxscaffold_5G00381720 Rroxscaffold_5G00386250 Rroxscaffold_5G00387520 Rroxscaffold_6G00390180 Rroxscaffold_6G00392810 Rroxscaffold_6G00401230 Rroxscaffold_6G00402640 Rroxscaffold_6G00405640 Rroxscaffold_6G00405650 Rroxscaffold_6G00405850 Rroxscaffold_6G00405860 Rroxscaffold_6G00412020 Rroxscaffold_6G00415690 Rroxscaffold_6G00415700 Rroxscaffold_7G00168110 Rroxscaffold_7G00178950 Rroxscaffold_7G00178960 Rroxscaffold_7G00193670 Rroxscaffold_7G00203020 Rroxscaffold_7G00203340 Rroxscaffold_7G00203550 Rroxscaffold_7G00207220 Rroxscaffold_7G00207250 Rroxscaffold_7G00207430 Rroxscaffold_7G00209310 Rroxscaffold_7G00211530 Rroxscaffold_7G00211540 Rroxscaffold_7G00214160 Rroxscaffold_7G00216040 Rroxscaffold_7G00216800
rosa_samantha Rh1AG276800 Rh1CG260400 Rh3CG366700
rosa_wichuraiana Rw1G001440 Rw3G029210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 470
AccB1I GGYRCC 1 cut(s) 635
AccB7I CCANNNNNTGG 2 cut(s) 868, 1241
AccII CGCG 9 cut(s) 46, 51, 61, 218, 306, 359, 446, 1117, 1556
AclWI GGATC 1 cut(s) 1226
AcoI YGGCCR 3 cut(s) 519, 998, 1020
AcsI RAATTY 4 cut(s) 649, 1125, 1500, 1550
AcuI CTGAAG 1 cut(s) 1508
AcyI GRCGYC 1 cut(s) 636
AfaI GTAC 3 cut(s) 1027, 1065, 1329
AfiI CCNNNNNNNGG 4 cut(s) 210, 868, 890, 1241
AgsI TTSAA 4 cut(s) 239, 272, 541, 740
AjiI CACGTC 1 cut(s) 911
AjnI CCWGG 5 cut(s) 543, 781, 1000, 1177, 1330
AjuI GAANNNNNNNTTGG 2 cut(s) 1535, 1567
AleI CACNNNNGTG 1 cut(s) 1260
AluBI AGCT 7 cut(s) 26, 39, 263, 1081, 1141, 1362, 1522
AluI AGCT 7 cut(s) 26, 39, 263, 1081, 1141, 1362, 1522
Alw26I GTCTC 1 cut(s) 139
AlwI GGATC 1 cut(s) 1226
AlwNI CAGNNNCTG 1 cut(s) 827
Ama87I CYCGRG 1 cut(s) 1074
AoxI GGCC 9 cut(s) 105, 519, 693, 892, 951, 998, 1020, 1353, 1533
ApaI GGGCCC 2 cut(s) 896, 955
ApeKI GCWGC 6 cut(s) 260, 593, 854, 1081, 1225, 1451
ApoI RAATTY 4 cut(s) 649, 1125, 1500, 1550
Asp700I GAANNNNTTC 1 cut(s) 1413
AspA2I CCTAGG 1 cut(s) 947
AspLEI GCGC 8 cut(s) 46, 51, 61, 321, 361, 500, 638, 1119
AspS9I GGNCC 5 cut(s) 892, 893, 951, 952, 1354
AsuC2I CCSGG 1 cut(s) 514
AsuHPI GGTGA 3 cut(s) 220, 651, 1531
AsuII TTCGAA 1 cut(s) 1272
AsuNHI GCTAGC 1 cut(s) 35
AvaI CYCGRG 1 cut(s) 1074
AvrII CCTAGG 1 cut(s) 947
BaeGI GKGCMC 3 cut(s) 896, 955, 1158
BaeI ACNNNNGTAYC 2 cut(s) 1311, 1344
BalI TGGCCA 2 cut(s) 521, 1000
BanI GGYRCC 1 cut(s) 635
BanII GRGCYC 3 cut(s) 385, 896, 955
BbsI GAAGAC 2 cut(s) 476, 977
BbvI GCAGC 6 cut(s) 272, 580, 841, 1068, 1237, 1438
BccI CCATC 5 cut(s) 488, 746, 956, 1401, 1525
BcgI CGANNNNNNTGC 2 cut(s) 839, 873
BciT130I CCWGG 5 cut(s) 545, 783, 1002, 1179, 1332
BciVI GTATCC 1 cut(s) 334
BclI TGATCA 1 cut(s) 930
BcnI CCSGG 1 cut(s) 514
BcoDI GTCTC 1 cut(s) 139
BfaI CTAG 4 cut(s) 36, 311, 402, 948
BfoI RGCGCY 2 cut(s) 501, 639
BfuAI ACCTGC 1 cut(s) 470
BfuI GTATCC 1 cut(s) 334
BglI GCCNNNNNGGC 1 cut(s) 1580
BglII AGATCT 1 cut(s) 1055
BlnI CCTAGG 1 cut(s) 947
Bme1390I CCNGG 6 cut(s) 514, 545, 783, 1002, 1179, 1332
BmeT110I CYCGRG 1 cut(s) 1074
BmgBI CACGTC 1 cut(s) 911
BmgT120I GGNCC 5 cut(s) 892, 893, 951, 952, 1354
BmiI GGNNCC 6 cut(s) 637, 712, 894, 953, 1198, 1512
BmrFI CCNGG 6 cut(s) 514, 545, 783, 1002, 1179, 1332
BmrI ACTGGG 1 cut(s) 289
BmsI GCATC 7 cut(s) 22, 476, 697, 972, 1001, 1319, 1561
BmtI GCTAGC 1 cut(s) 39
BmuI ACTGGG 1 cut(s) 289
BpiI GAAGAC 2 cut(s) 476, 977
BpmI CTGGAG 1 cut(s) 96
Bpu10I CCTNAGC 1 cut(s) 1358
Bpu14I TTCGAA 1 cut(s) 1272
BpuMI CCSGG 1 cut(s) 514
Bsa29I ATCGAT 1 cut(s) 1529
BsaHI GRCGYC 1 cut(s) 636
BsaJI CCNNGG 5 cut(s) 204, 390, 513, 947, 1506
BsaWI WCCGGW 1 cut(s) 1466
BsaXI ACNNNNNCTCC 4 cut(s) 559, 589, 865, 895
Bsc4I CCNNNNNNNGG 4 cut(s) 210, 868, 890, 1241
Bse118I RCCGGY 1 cut(s) 1369
Bse1I ACTGG 6 cut(s) 108, 295, 630, 963, 1023, 1235
Bse3DI GCAATG 1 cut(s) 1021
BseBI CCWGG 5 cut(s) 545, 783, 1002, 1179, 1332
BseCI ATCGAT 1 cut(s) 1529
BseDI CCNNGG 5 cut(s) 204, 390, 513, 947, 1506
BseGI GGATG 5 cut(s) 499, 967, 987, 1310, 1426
BseLI CCNNNNNNNGG 4 cut(s) 210, 868, 890, 1241
BseMI GCAATG 1 cut(s) 1021
BseMII CTCAG 3 cut(s) 968, 1297, 1349
BseNI ACTGG 6 cut(s) 108, 295, 630, 963, 1023, 1235
BseRI GAGGAG 4 cut(s) 873, 876, 1271, 1451
BseSI GKGCMC 3 cut(s) 896, 955, 1158
BseXI GCAGC 6 cut(s) 272, 580, 841, 1068, 1237, 1438
Bsh1236I CGCG 9 cut(s) 46, 51, 61, 218, 306, 359, 446, 1117, 1556
BshFI GGCC 9 cut(s) 107, 521, 695, 894, 953, 1000, 1022, 1355, 1535
BshNI GGYRCC 1 cut(s) 635
BshVI ATCGAT 1 cut(s) 1529
BsiHKCI CYCGRG 1 cut(s) 1074
BsiSI CCGG 3 cut(s) 513, 1370, 1467
BslFI GGGAC 1 cut(s) 832
BslI CCNNNNNNNGG 4 cut(s) 210, 868, 890, 1241
BsmAI GTCTC 1 cut(s) 139
BsmFI GGGAC 1 cut(s) 832
BsmI GAATGC 2 cut(s) 376, 1312
BsnI GGCC 9 cut(s) 107, 521, 695, 894, 953, 1000, 1022, 1355, 1535
BsoBI CYCGRG 1 cut(s) 1074
Bsp119I TTCGAA 1 cut(s) 1272
Bsp120I GGGCCC 2 cut(s) 892, 951
Bsp1286I GDGCHC 4 cut(s) 385, 896, 955, 1158
Bsp143I GATC 6 cut(s) 71, 219, 429, 930, 1055, 1231
Bsp68I TCGCGA 3 cut(s) 218, 446, 1556
BspANI GGCC 9 cut(s) 107, 521, 695, 894, 953, 1000, 1022, 1355, 1535
BspCNI CTCAG 3 cut(s) 969, 1296, 1350
BspDI ATCGAT 1 cut(s) 1529
BspFNI CGCG 9 cut(s) 46, 51, 61, 218, 306, 359, 446, 1117, 1556
BspLI GGNNCC 6 cut(s) 637, 712, 894, 953, 1198, 1512
BspMI ACCTGC 1 cut(s) 470
BspOI GCTAGC 1 cut(s) 39
BspPI GGATC 1 cut(s) 1226
BspT104I TTCGAA 1 cut(s) 1272
BspT107I GGYRCC 1 cut(s) 635
BsrDI GCAATG 1 cut(s) 1021
BsrFI RCCGGY 1 cut(s) 1369
BsrI ACTGG 6 cut(s) 108, 295, 630, 963, 1023, 1235
BssAI RCCGGY 1 cut(s) 1369
BssECI CCNNGG 5 cut(s) 204, 390, 513, 947, 1506
BssMI GATC 6 cut(s) 71, 219, 429, 930, 1055, 1231
BssNI GRCGYC 1 cut(s) 636
BssT1I CCWWGG 2 cut(s) 947, 1506
Bst2UI CCWGG 5 cut(s) 545, 783, 1002, 1179, 1332
Bst4CI ACNGT 5 cut(s) 283, 589, 868, 1348, 1403
Bst6I CTCTTC 1 cut(s) 1428
BstACI GRCGYC 1 cut(s) 636
BstAPI GCANNNNNTGC 1 cut(s) 590
BstBI TTCGAA 1 cut(s) 1272
BstC8I GCNNGC 6 cut(s) 37, 621, 640, 852, 859, 1371
BstDEI CTNAG 6 cut(s) 13, 345, 977, 1159, 1283, 1358
BstDSI CCRYGG 1 cut(s) 390
BstF5I GGATG 5 cut(s) 499, 967, 987, 1310, 1426
BstFNI CGCG 9 cut(s) 46, 51, 61, 218, 306, 359, 446, 1117, 1556
BstH2I RGCGCY 2 cut(s) 501, 639
BstHHI GCGC 8 cut(s) 46, 51, 61, 321, 361, 500, 638, 1119
BstKTI GATC 6 cut(s) 74, 222, 432, 933, 1058, 1234
BstMAI GTCTC 1 cut(s) 139
BstMBI GATC 6 cut(s) 71, 219, 429, 930, 1055, 1231
BstNI CCWGG 5 cut(s) 545, 783, 1002, 1179, 1332
BstNSI RCATGY 1 cut(s) 335
BstSCI CCNGG 6 cut(s) 512, 543, 781, 1000, 1177, 1330
BstSLI GKGCMC 3 cut(s) 896, 955, 1158
BstUI CGCG 9 cut(s) 46, 51, 61, 218, 306, 359, 446, 1117, 1556
BstV1I GCAGC 6 cut(s) 272, 580, 841, 1068, 1237, 1438
BstV2I GAAGAC 2 cut(s) 476, 977
BstX2I RGATCY 1 cut(s) 1055
BstXI CCANNNNNNTGG 2 cut(s) 145, 962
BstYI RGATCY 1 cut(s) 1055
Bsu15I ATCGAT 1 cut(s) 1529
BsuI GTATCC 1 cut(s) 334
BsuRI GGCC 9 cut(s) 107, 521, 695, 894, 953, 1000, 1022, 1355, 1535
BsuTUI ATCGAT 1 cut(s) 1529
BtgI CCRYGG 1 cut(s) 390
BtgZI GCGATG 3 cut(s) 230, 765, 1325
BtrI CACGTC 1 cut(s) 911
BtsCI GGATG 5 cut(s) 499, 967, 987, 1310, 1426
BtsIMutI CAGTG 6 cut(s) 115, 422, 602, 623, 974, 1408
BtuMI TCGCGA 3 cut(s) 218, 446, 1556
BveI ACCTGC 1 cut(s) 470
Cac8I GCNNGC 6 cut(s) 37, 621, 640, 852, 859, 1371
CaiI CAGNNNCTG 1 cut(s) 827
CfoI GCGC 8 cut(s) 46, 51, 61, 321, 361, 500, 638, 1119
Cfr10I RCCGGY 1 cut(s) 1369
Cfr13I GGNCC 5 cut(s) 892, 893, 951, 952, 1354
ClaI ATCGAT 1 cut(s) 1529
CseI GACGC 2 cut(s) 50, 1304
Csp6I GTAC 3 cut(s) 1026, 1064, 1328
CspCI CAANNNNNGTGG 2 cut(s) 498, 533
CviAII CATG 9 cut(s) 226, 332, 386, 433, 523, 663, 1221, 1229, 1586
CviQI GTAC 3 cut(s) 1026, 1064, 1328
DdeI CTNAG 6 cut(s) 13, 345, 977, 1159, 1283, 1358
DinI GGCGCC 1 cut(s) 637
DpnI GATC 6 cut(s) 73, 221, 431, 932, 1057, 1233
DpnII GATC 6 cut(s) 71, 219, 429, 930, 1055, 1231
EaeI YGGCCR 3 cut(s) 519, 998, 1020
Eam1104I CTCTTC 1 cut(s) 1428
EarI CTCTTC 1 cut(s) 1428
Eco130I CCWWGG 2 cut(s) 947, 1506
Eco147I AGGCCT 1 cut(s) 695
Eco24I GRGCYC 3 cut(s) 385, 896, 955
Eco32I GATATC 2 cut(s) 1041, 1447
Eco57I CTGAAG 1 cut(s) 1508
Eco88I CYCGRG 1 cut(s) 1074
EcoO109I RGGNCCY 1 cut(s) 951
EcoRI GAATTC 1 cut(s) 1550
EcoRII CCWGG 5 cut(s) 543, 781, 1000, 1177, 1330
EcoRV GATATC 2 cut(s) 1041, 1447
EcoT14I CCWWGG 2 cut(s) 947, 1506
EcoT22I ATGCAT 1 cut(s) 1312
EcoT38I GRGCYC 3 cut(s) 385, 896, 955
EgeI GGCGCC 1 cut(s) 637
EheI GGCGCC 1 cut(s) 637
ErhI CCWWGG 2 cut(s) 947, 1506
FaeI CATG 9 cut(s) 229, 335, 389, 436, 526, 666, 1224, 1232, 1589
FalI AAGNNNNNCTT 2 cut(s) 151, 183
FaqI GGGAC 1 cut(s) 832
FatI CATG 9 cut(s) 225, 331, 385, 432, 522, 662, 1220, 1228, 1585
FauNDI CATATG 2 cut(s) 1324, 1567
FbaI TGATCA 1 cut(s) 930
FokI GGATG 5 cut(s) 506, 974, 994, 1297, 1433
FriOI GRGCYC 3 cut(s) 385, 896, 955
FspBI CTAG 4 cut(s) 36, 311, 402, 948
GlaI GCGC 8 cut(s) 45, 50, 60, 320, 360, 499, 637, 1118
GsuI CTGGAG 1 cut(s) 96
HaeII RGCGCY 2 cut(s) 501, 639
HaeIII GGCC 9 cut(s) 107, 521, 695, 894, 953, 1000, 1022, 1355, 1535
HapII CCGG 3 cut(s) 513, 1370, 1467
HgaI GACGC 2 cut(s) 50, 1304
HhaI GCGC 8 cut(s) 46, 51, 61, 321, 361, 500, 638, 1119
Hin1I GRCGYC 1 cut(s) 636
Hin1II CATG 9 cut(s) 229, 335, 389, 436, 526, 666, 1224, 1232, 1589
Hin6I GCGC 8 cut(s) 44, 49, 59, 319, 359, 498, 636, 1117
HinP1I GCGC 8 cut(s) 44, 49, 59, 319, 359, 498, 636, 1117
HincII GTYRAC 1 cut(s) 1175
HindII GTYRAC 1 cut(s) 1175
HindIII AAGCTT 1 cut(s) 24
HinfI GANTC 4 cut(s) 412, 1094, 1414, 1477
HpaII CCGG 3 cut(s) 513, 1370, 1467
HphI GGTGA 3 cut(s) 220, 651, 1531
Hpy166II GTNNAC 1 cut(s) 1175
Hpy188I TCNGA 8 cut(s) 22, 31, 87, 205, 367, 472, 1131, 1286
Hpy188III TCNNGA 6 cut(s) 75, 217, 445, 1076, 1418, 1555
Hpy8I GTNNAC 1 cut(s) 1175
Hpy99I CGWCG 2 cut(s) 66, 1430
HpyAV CCTTC 3 cut(s) 588, 1464, 1546
HpyCH4III ACNGT 5 cut(s) 283, 589, 868, 1348, 1403
HpyCH4IV ACGT 2 cut(s) 910, 1146
HpyCH4V TGCA 9 cut(s) 335, 374, 467, 526, 830, 850, 1014, 1052, 1310
HpyF3I CTNAG 6 cut(s) 13, 345, 977, 1159, 1283, 1358
HpySE526I ACGT 2 cut(s) 910, 1146
Hsp92I GRCGYC 1 cut(s) 636
Hsp92II CATG 9 cut(s) 229, 335, 389, 436, 526, 666, 1224, 1232, 1589
HspAI GCGC 8 cut(s) 44, 49, 59, 319, 359, 498, 636, 1117
KasI GGCGCC 1 cut(s) 635
KroI GCCGGC 1 cut(s) 1369
KroNI GCCGGC 1 cut(s) 1371
Ksp22I TGATCA 1 cut(s) 930
Kzo9I GATC 6 cut(s) 71, 219, 429, 930, 1055, 1231
LmnI GCTCC 1 cut(s) 1078
Lsp1109I GCAGC 6 cut(s) 272, 580, 841, 1068, 1237, 1438
LweI GCATC 7 cut(s) 22, 476, 697, 972, 1001, 1319, 1561
MaeI CTAG 4 cut(s) 36, 311, 402, 948
MaeII ACGT 2 cut(s) 910, 1146
MaeIII GTNAC 2 cut(s) 91, 196
MalI GATC 6 cut(s) 73, 221, 431, 932, 1057, 1233
MboI GATC 6 cut(s) 71, 219, 429, 930, 1055, 1231
MboII GAAGA 9 cut(s) 265, 476, 937, 982, 1103, 1315, 1418, 1445, 1486
MflI RGATCY 1 cut(s) 1055
MhlI GDGCHC 4 cut(s) 385, 896, 955, 1158
MlsI TGGCCA 2 cut(s) 521, 1000
MluCI AATT 5 cut(s) 536, 649, 1125, 1500, 1550
MluNI TGGCCA 2 cut(s) 521, 1000
Mly113I GGCGCC 1 cut(s) 636
MlyI GAGTC 1 cut(s) 1103
MmeI TCCRAC 1 cut(s) 744
Mox20I TGGCCA 2 cut(s) 521, 1000
Mph1103I ATGCAT 1 cut(s) 1312
MroNI GCCGGC 1 cut(s) 1369
MroXI GAANNNNTTC 1 cut(s) 1413
MscI TGGCCA 2 cut(s) 521, 1000
MseI TTAA 1 cut(s) 1007
MslI CAYNNNNRTG 2 cut(s) 1260, 1401
Msp20I TGGCCA 2 cut(s) 521, 1000
MspA1I CMGCKG 3 cut(s) 131, 263, 1100
MspI CCGG 3 cut(s) 513, 1370, 1467
MspR9I CCNGG 6 cut(s) 514, 545, 783, 1002, 1179, 1332
MteI GCGCNGCGC 1 cut(s) 47
Mva1269I GAATGC 2 cut(s) 376, 1312
MvaI CCWGG 5 cut(s) 545, 783, 1002, 1179, 1332
MvnI CGCG 9 cut(s) 46, 51, 61, 218, 306, 359, 446, 1117, 1556
NaeI GCCGGC 1 cut(s) 1371
NarI GGCGCC 1 cut(s) 636
NciI CCSGG 1 cut(s) 514
NdeI CATATG 2 cut(s) 1324, 1567
NdeII GATC 6 cut(s) 71, 219, 429, 930, 1055, 1231
NgoMIV GCCGGC 1 cut(s) 1369
NheI GCTAGC 1 cut(s) 35
NlaIII CATG 9 cut(s) 229, 335, 389, 436, 526, 666, 1224, 1232, 1589
NlaIV GGNNCC 6 cut(s) 637, 712, 894, 953, 1198, 1512
NmuCI GTSAC 2 cut(s) 91, 196
NruI TCGCGA 3 cut(s) 218, 446, 1556
NsiI ATGCAT 1 cut(s) 1312
NspI RCATGY 1 cut(s) 335
NspV TTCGAA 1 cut(s) 1272
OliI CACNNNNGTG 1 cut(s) 1260
PceI AGGCCT 1 cut(s) 695
PctI GAATGC 2 cut(s) 376, 1312
PdiI GCCGGC 1 cut(s) 1371
PdmI GAANNNNTTC 1 cut(s) 1413
PfeI GAWTC 3 cut(s) 412, 1414, 1477
PflMI CCANNNNNTGG 2 cut(s) 868, 1241
PleI GAGTC 1 cut(s) 1102
PluTI GGCGCC 1 cut(s) 639
PpsI GAGTC 1 cut(s) 1102
Psp6I CCWGG 5 cut(s) 543, 781, 1000, 1177, 1330
PspGI CCWGG 5 cut(s) 543, 781, 1000, 1177, 1330
PspN4I GGNNCC 6 cut(s) 637, 712, 894, 953, 1198, 1512
PspOMI GGGCCC 2 cut(s) 892, 951
PspPI GGNCC 5 cut(s) 892, 893, 951, 952, 1354
PstNI CAGNNNCTG 1 cut(s) 827
PsuI RGATCY 1 cut(s) 1055
PvuII CAGCTG 1 cut(s) 263
RruI TCGCGA 3 cut(s) 218, 446, 1556
RsaI GTAC 3 cut(s) 1027, 1065, 1329
RsaNI GTAC 3 cut(s) 1026, 1064, 1328
RseI CAYNNNNRTG 2 cut(s) 1260, 1401
SaqAI TTAA 1 cut(s) 1007
Sau3AI GATC 6 cut(s) 71, 219, 429, 930, 1055, 1231
Sau96I GGNCC 5 cut(s) 892, 893, 951, 952, 1354
SchI GAGTC 1 cut(s) 1103
ScrFI CCNGG 6 cut(s) 514, 545, 783, 1002, 1179, 1332
SduI GDGCHC 4 cut(s) 385, 896, 955, 1158
SfaNI GCATC 7 cut(s) 22, 476, 697, 972, 1001, 1319, 1561
SfoI GGCGCC 1 cut(s) 637
SfuI TTCGAA 1 cut(s) 1272
SmiMI CAYNNNNRTG 2 cut(s) 1260, 1401
Sse9I AATT 5 cut(s) 536, 649, 1125, 1500, 1550
SseBI AGGCCT 1 cut(s) 695
SspDI GGCGCC 1 cut(s) 635
SspI AATATT 1 cut(s) 235
SspMI CTAG 4 cut(s) 36, 311, 402, 948
StuI AGGCCT 1 cut(s) 695
StyD4I CCNGG 6 cut(s) 512, 543, 781, 1000, 1177, 1330
StyI CCWWGG 2 cut(s) 947, 1506
TaaI ACNGT 5 cut(s) 283, 589, 868, 1348, 1403
TaiI ACGT 2 cut(s) 913, 1149
TaqI TCGA 3 cut(s) 698, 1272, 1529
TasI AATT 5 cut(s) 536, 649, 1125, 1500, 1550
TauI GCSGC 5 cut(s) 49, 59, 988, 1022, 1355
TfiI GAWTC 3 cut(s) 412, 1414, 1477
Tru1I TTAA 1 cut(s) 1007
Tru9I TTAA 1 cut(s) 1007
TscAI CASTG 6 cut(s) 115, 422, 609, 630, 981, 1408
TseFI GTSAC 2 cut(s) 91, 196
TseI GCWGC 6 cut(s) 260, 593, 854, 1081, 1225, 1451
Tsp45I GTSAC 2 cut(s) 91, 196
TspDTI ATGAA 2 cut(s) 289, 1473
TspRI CASTG 6 cut(s) 115, 422, 609, 630, 981, 1408
Van91I CCANNNNNTGG 2 cut(s) 868, 1241
XapI RAATTY 4 cut(s) 649, 1125, 1500, 1550
XceI RCATGY 1 cut(s) 335
XmaJI CCTAGG 1 cut(s) 947
XmnI GAANNNNTTC 1 cut(s) 1413
XspI CTAG 4 cut(s) 36, 311, 402, 948
Zsp2I ATGCAT 1 cut(s) 1312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.