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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 342 |
| AccB1I | GGYRCC | 1 cut(s) | 342 |
| AccBSI | CCGCTC | 1 cut(s) | 21 |
| AccII | CGCG | 1 cut(s) | 51 |
| AciI | CCGC | 3 cut(s) | 19, 265, 292 |
| AclWI | GGATC | 5 cut(s) | 97, 110, 177, 190, 405 |
| AcuI | CTGAAG | 2 cut(s) | 202, 405 |
| AfaI | GTAC | 2 cut(s) | 224, 344 |
| AfeI | AGCGCT | 1 cut(s) | 88 |
| AgeI | ACCGGT | 1 cut(s) | 9 |
| AjnI | CCWGG | 4 cut(s) | 148, 328, 470, 493 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 159, 191 |
| AluBI | AGCT | 3 cut(s) | 138, 285, 549 |
| AluI | AGCT | 3 cut(s) | 138, 285, 549 |
| AlwI | GGATC | 5 cut(s) | 97, 110, 177, 190, 405 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 225 |
| Aor51HI | AGCGCT | 1 cut(s) | 88 |
| AoxI | GGCC | 2 cut(s) | 16, 146 |
| ApeKI | GCWGC | 2 cut(s) | 285, 560 |
| AsiGI | ACCGGT | 1 cut(s) | 9 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 88, 466 |
| Asp718I | GGTACC | 1 cut(s) | 342 |
| AspLEI | GCGC | 1 cut(s) | 89 |
| AspS9I | GGNCC | 1 cut(s) | 146 |
| AsuNHI | GCTAGC | 1 cut(s) | 498 |
| BamHI | GGATCC | 2 cut(s) | 102, 182 |
| BanI | GGYRCC | 1 cut(s) | 342 |
| BbsI | GAAGAC | 2 cut(s) | 264, 393 |
| BbvCI | CCTCAGC | 1 cut(s) | 302 |
| BbvI | GCAGC | 2 cut(s) | 272, 572 |
| BciT130I | CCWGG | 4 cut(s) | 150, 330, 472, 495 |
| BfaI | CTAG | 3 cut(s) | 250, 262, 499 |
| BfmI | CTRYAG | 1 cut(s) | 558 |
| BfoI | RGCGCY | 1 cut(s) | 90 |
| BisI | GCNGC | 4 cut(s) | 19, 266, 286, 561 |
| BlsI | GCNGC | 4 cut(s) | 20, 267, 287, 562 |
| Bme1390I | CCNGG | 4 cut(s) | 150, 330, 472, 495 |
| BmgT120I | GGNCC | 1 cut(s) | 146 |
| BmiI | GGNNCC | 3 cut(s) | 104, 184, 344 |
| BmrFI | CCNGG | 4 cut(s) | 150, 330, 472, 495 |
| BmrI | ACTGGG | 1 cut(s) | 216 |
| BmsI | GCATC | 1 cut(s) | 572 |
| BmtI | GCTAGC | 1 cut(s) | 502 |
| BmuI | ACTGGG | 1 cut(s) | 216 |
| BoxI | GACNNNNGTC | 1 cut(s) | 120 |
| BpiI | GAAGAC | 2 cut(s) | 264, 393 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 365, 397 |
| Bpu10I | CCTNAGC | 1 cut(s) | 302 |
| BsaJI | CCNNGG | 4 cut(s) | 328, 346, 471, 523 |
| BsaWI | WCCGGW | 1 cut(s) | 9 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 344, 374 |
| Bse118I | RCCGGY | 1 cut(s) | 9 |
| Bse1I | ACTGG | 3 cut(s) | 211, 230, 391 |
| BseBI | CCWGG | 4 cut(s) | 150, 330, 472, 495 |
| BseDI | CCNNGG | 4 cut(s) | 328, 346, 471, 523 |
| BseGI | GGATG | 1 cut(s) | 563 |
| BseMII | CTCAG | 3 cut(s) | 36, 130, 316 |
| BseNI | ACTGG | 3 cut(s) | 211, 230, 391 |
| BseXI | GCAGC | 2 cut(s) | 272, 572 |
| Bsh1236I | CGCG | 1 cut(s) | 51 |
| BshFI | GGCC | 2 cut(s) | 18, 148 |
| BshNI | GGYRCC | 1 cut(s) | 342 |
| BshTI | ACCGGT | 1 cut(s) | 9 |
| BsiSI | CCGG | 1 cut(s) | 10 |
| BslFI | GGGAC | 1 cut(s) | 223 |
| BsmFI | GGGAC | 1 cut(s) | 223 |
| BsnI | GGCC | 2 cut(s) | 18, 148 |
| Bsp143I | GATC | 4 cut(s) | 102, 182, 410, 508 |
| Bsp68I | TCGCGA | 1 cut(s) | 51 |
| BspACI | CCGC | 3 cut(s) | 19, 265, 292 |
| BspANI | GGCC | 2 cut(s) | 18, 148 |
| BspCNI | CTCAG | 3 cut(s) | 35, 131, 315 |
| BspFNI | CGCG | 1 cut(s) | 51 |
| BspLI | GGNNCC | 3 cut(s) | 104, 184, 344 |
| BspMAI | CTGCAG | 1 cut(s) | 562 |
| BspOI | GCTAGC | 1 cut(s) | 502 |
| BspPI | GGATC | 5 cut(s) | 97, 110, 177, 190, 405 |
| BspT107I | GGYRCC | 1 cut(s) | 342 |
| BsrBI | CCGCTC | 1 cut(s) | 21 |
| BsrFI | RCCGGY | 1 cut(s) | 9 |
| BsrI | ACTGG | 3 cut(s) | 211, 230, 391 |
| BssAI | RCCGGY | 1 cut(s) | 9 |
| BssECI | CCNNGG | 4 cut(s) | 328, 346, 471, 523 |
| BssMI | GATC | 4 cut(s) | 102, 182, 410, 508 |
| BssT1I | CCWWGG | 2 cut(s) | 346, 523 |
| Bst2UI | CCWGG | 4 cut(s) | 150, 330, 472, 495 |
| Bst4CI | ACNGT | 2 cut(s) | 275, 438 |
| BstC8I | GCNNGC | 2 cut(s) | 30, 500 |
| BstDEI | CTNAG | 3 cut(s) | 22, 139, 302 |
| BstF5I | GGATG | 1 cut(s) | 563 |
| BstFNI | CGCG | 1 cut(s) | 51 |
| BstH2I | RGCGCY | 1 cut(s) | 90 |
| BstHHI | GCGC | 1 cut(s) | 89 |
| BstKTI | GATC | 4 cut(s) | 105, 185, 413, 511 |
| BstMBI | GATC | 4 cut(s) | 102, 182, 410, 508 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 48, 57, 291 |
| BstNI | CCWGG | 4 cut(s) | 150, 330, 472, 495 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 120 |
| BstSCI | CCNGG | 4 cut(s) | 148, 328, 470, 493 |
| BstSFI | CTRYAG | 1 cut(s) | 558 |
| BstUI | CGCG | 1 cut(s) | 51 |
| BstV1I | GCAGC | 2 cut(s) | 272, 572 |
| BstV2I | GAAGAC | 2 cut(s) | 264, 393 |
| BstX2I | RGATCY | 2 cut(s) | 102, 182 |
| BstYI | RGATCY | 2 cut(s) | 102, 182 |
| BsuRI | GGCC | 2 cut(s) | 18, 148 |
| BtgZI | GCGATG | 1 cut(s) | 32 |
| BtsCI | GGATG | 1 cut(s) | 563 |
| BtsI | GCAGTG | 1 cut(s) | 555 |
| BtsIMutI | CAGTG | 4 cut(s) | 204, 398, 443, 555 |
| BtuMI | TCGCGA | 1 cut(s) | 51 |
| Cac8I | GCNNGC | 2 cut(s) | 30, 500 |
| CaiI | CAGNNNCTG | 1 cut(s) | 225 |
| CfoI | GCGC | 1 cut(s) | 89 |
| Cfr10I | RCCGGY | 1 cut(s) | 9 |
| Cfr13I | GGNCC | 1 cut(s) | 146 |
| Csp6I | GTAC | 2 cut(s) | 223, 343 |
| CspAI | ACCGGT | 1 cut(s) | 9 |
| CviQI | GTAC | 2 cut(s) | 223, 343 |
| DdeI | CTNAG | 3 cut(s) | 22, 139, 302 |
| DpnI | GATC | 4 cut(s) | 104, 184, 412, 510 |
| DpnII | GATC | 4 cut(s) | 102, 182, 410, 508 |
| Eco130I | CCWWGG | 2 cut(s) | 346, 523 |
| Eco47III | AGCGCT | 1 cut(s) | 88 |
| Eco57I | CTGAAG | 2 cut(s) | 202, 405 |
| EcoRII | CCWGG | 4 cut(s) | 148, 328, 470, 493 |
| EcoT14I | CCWWGG | 2 cut(s) | 346, 523 |
| ErhI | CCWWGG | 2 cut(s) | 346, 523 |
| FaiI | YATR | 8 cut(s) | 3, 34, 67, 165, 237, 460, 484, 552 |
| FaqI | GGGAC | 1 cut(s) | 223 |
| Fnu4HI | GCNGC | 4 cut(s) | 19, 266, 286, 561 |
| FokI | GGATG | 1 cut(s) | 550 |
| Fsp4HI | GCNGC | 4 cut(s) | 19, 266, 286, 561 |
| FspBI | CTAG | 3 cut(s) | 250, 262, 499 |
| GlaI | GCGC | 1 cut(s) | 88 |
| GluI | GCNGC | 4 cut(s) | 19, 266, 286, 561 |
| HaeII | RGCGCY | 1 cut(s) | 90 |
| HaeIII | GGCC | 2 cut(s) | 18, 148 |
| HapII | CCGG | 1 cut(s) | 10 |
| HhaI | GCGC | 1 cut(s) | 89 |
| Hin6I | GCGC | 1 cut(s) | 87 |
| HinP1I | GCGC | 1 cut(s) | 87 |
| HinfI | GANTC | 1 cut(s) | 380 |
| HpaII | CCGG | 1 cut(s) | 10 |
| Hpy166II | GTNNAC | 1 cut(s) | 424 |
| Hpy188I | TCNGA | 4 cut(s) | 25, 77, 385, 508 |
| Hpy188III | TCNNGA | 2 cut(s) | 50, 512 |
| Hpy8I | GTNNAC | 1 cut(s) | 424 |
| HpyAV | CCTTC | 2 cut(s) | 226, 390 |
| HpyCH4III | ACNGT | 2 cut(s) | 275, 438 |
| HpyCH4V | TGCA | 2 cut(s) | 288, 560 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 48, 57, 291 |
| HpyF3I | CTNAG | 3 cut(s) | 22, 139, 302 |
| HspAI | GCGC | 1 cut(s) | 87 |
| KpnI | GGTACC | 1 cut(s) | 346 |
| Kzo9I | GATC | 4 cut(s) | 102, 182, 410, 508 |
| Lsp1109I | GCAGC | 2 cut(s) | 272, 572 |
| LweI | GCATC | 1 cut(s) | 572 |
| MaeI | CTAG | 3 cut(s) | 250, 262, 499 |
| MaeIII | GTNAC | 3 cut(s) | 275, 438, 536 |
| MalI | GATC | 4 cut(s) | 104, 184, 412, 510 |
| MbiI | CCGCTC | 1 cut(s) | 21 |
| MboI | GATC | 4 cut(s) | 102, 182, 410, 508 |
| MboII | GAAGA | 4 cut(s) | 266, 269, 398, 474 |
| MflI | RGATCY | 2 cut(s) | 102, 182 |
| MluCI | AATT | 3 cut(s) | 78, 334, 476 |
| MlyI | GAGTC | 1 cut(s) | 374 |
| MmeI | TCCRAC | 1 cut(s) | 381 |
| MnlI | CCTC | 5 cut(s) | 92, 250, 305, 311, 374 |
| MroXI | GAANNNNTTC | 2 cut(s) | 88, 466 |
| MspA1I | CMGCKG | 1 cut(s) | 285 |
| MspI | CCGG | 1 cut(s) | 10 |
| MspR9I | CCNGG | 4 cut(s) | 150, 330, 472, 495 |
| MvaI | CCWGG | 4 cut(s) | 150, 330, 472, 495 |
| MvnI | CGCG | 1 cut(s) | 51 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 48, 57, 291 |
| NdeII | GATC | 4 cut(s) | 102, 182, 410, 508 |
| NheI | GCTAGC | 1 cut(s) | 498 |
| NlaIV | GGNNCC | 3 cut(s) | 104, 184, 344 |
| NmuCI | GTSAC | 2 cut(s) | 438, 536 |
| NruI | TCGCGA | 1 cut(s) | 51 |
| PdmI | GAANNNNTTC | 2 cut(s) | 88, 466 |
| PinAI | ACCGGT | 1 cut(s) | 9 |
| PkrI | GCNGC | 4 cut(s) | 20, 267, 287, 562 |
| PleI | GAGTC | 1 cut(s) | 374 |
| PpsI | GAGTC | 1 cut(s) | 374 |
| PshAI | GACNNNNGTC | 1 cut(s) | 120 |
| Psp6I | CCWGG | 4 cut(s) | 148, 328, 470, 493 |
| PspGI | CCWGG | 4 cut(s) | 148, 328, 470, 493 |
| PspN4I | GGNNCC | 3 cut(s) | 104, 184, 344 |
| PspPI | GGNCC | 1 cut(s) | 146 |
| PstI | CTGCAG | 1 cut(s) | 562 |
| PstNI | CAGNNNCTG | 1 cut(s) | 225 |
| PsuI | RGATCY | 2 cut(s) | 102, 182 |
| PvuII | CAGCTG | 1 cut(s) | 285 |
| RruI | TCGCGA | 1 cut(s) | 51 |
| RsaI | GTAC | 2 cut(s) | 224, 344 |
| RsaNI | GTAC | 2 cut(s) | 223, 343 |
| SatI | GCNGC | 4 cut(s) | 19, 266, 286, 561 |
| Sau3AI | GATC | 4 cut(s) | 102, 182, 410, 508 |
| Sau96I | GGNCC | 1 cut(s) | 146 |
| SchI | GAGTC | 1 cut(s) | 374 |
| ScrFI | CCNGG | 4 cut(s) | 150, 330, 472, 495 |
| SetI | ASST | 6 cut(s) | 140, 218, 224, 242, 287, 551 |
| SfaNI | GCATC | 1 cut(s) | 572 |
| SfcI | CTRYAG | 1 cut(s) | 558 |
| Sse9I | AATT | 3 cut(s) | 78, 334, 476 |
| SsiI | CCGC | 3 cut(s) | 19, 265, 292 |
| SspMI | CTAG | 3 cut(s) | 250, 262, 499 |
| StyD4I | CCNGG | 4 cut(s) | 148, 328, 470, 493 |
| StyI | CCWWGG | 2 cut(s) | 346, 523 |
| TaaI | ACNGT | 2 cut(s) | 275, 438 |
| TasI | AATT | 3 cut(s) | 78, 334, 476 |
| TauI | GCSGC | 2 cut(s) | 21, 268 |
| TscAI | CASTG | 4 cut(s) | 211, 398, 443, 562 |
| TseFI | GTSAC | 2 cut(s) | 438, 536 |
| TseI | GCWGC | 2 cut(s) | 285, 560 |
| Tsp45I | GTSAC | 2 cut(s) | 438, 536 |
| TspDTI | ATGAA | 2 cut(s) | 180, 475 |
| TspRI | CASTG | 4 cut(s) | 211, 398, 443, 562 |
| XmnI | GAANNNNTTC | 2 cut(s) | 88, 466 |
| XspI | CTAG | 3 cut(s) | 250, 262, 499 |