Rroxscaffold_3G00245030

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000057
Physical Location & Seq
Reverse (-)
37833696 .. 37834277
582 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00245030.1

Sequence Viewer

Length: 255 bp
ATGGCGGATCTTCGCAAGGATGGCGCTAACCTTGCTACCGAGCGACGGAGCGAGAAAACATATACCAGGAGTCGTCGGGAAGCTATTATGGGATTGGCGAAAGAGAAACCTATCCCGGCAGTAACTCTTCGAAGAACCGGTCACAACCCATGTTGTGCATGTAGGAGAAGGGCCAGCGAATGTGAACCAAGCGGTACCTCCGCAGTCGCTCGCCATGCTATGGCGATACCCCATCCTCCTCCTCCCGGCCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

84

Amino Acids

9.16

Weight (kDa)

10.2

Isoelectric Point (pI)

91.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000057)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00341 FvH4_2g18201 FvH4_2g24491 FvH4_2g24511 FvH4_3g22961 FvH4_3g33532 FvH4_3g33534 FvH4_4g05275 FvH4_4g12372 FvH4_5g20143 FvH4_7g12392
pyrus_communis pycom12g16120
rosa_chinensis RchiOBHm_Chr5g0023531 RchiOBHm_Chr6g0271201
rosa_laevigata RLG00000030639
rosa_multiflora Rmu_co8016136.1_g000001 Rmu_co8027180.1_g000001 Rmu_co8041016.1_g000001 Rmu_co8052812.1_g000001 Rmu_co8152468.1_g000001 Rmu_co8165796.1_g000001 Rmu_co8170214.1_g000001 Rmu_co8227433.1_g000001 Rmu_co8241379.1_g000001 Rmu_co8254305.1_g000001 Rmu_co8258647.1_g000001 Rmu_co8265535.1_g000002 Rmu_co8276845.1_g000001 Rmu_co8296303.1_g000001 Rmu_co8304827.1_g000001 Rmu_co8308345.1_g000001 Rmu_co8320493.1_g000002 Rmu_co8326955.1_g000001 Rmu_co8331007.1_g000001 Rmu_co8335625.1_g000001 Rmu_co8354465.1_g000001 Rmu_co8360201.1_g000001 Rmu_co8362075.1_g000002 Rmu_co8362991.1_g000001 Rmu_co8364567.1_g000001 Rmu_co8365273.1_g000001 Rmu_co8387267.1_g000001 Rmu_co8395251.1_g000002 Rmu_co8396677.1_g000001 Rmu_co8457659.1_g000001 Rmu_co8478117.1_g000001 Rmu_co8487163.1_g000001 Rmu_co8498169.1_g000001 Rmu_sc0000029.1_g000022 Rmu_sc0000063.1_g000007 Rmu_sc0000112.1_g000020 Rmu_sc0000146.1_g000006 Rmu_sc0000245.1_g000015 Rmu_sc0000276.1_g000036 Rmu_sc0000334.1_g000033 Rmu_sc0000334.1_g000034 Rmu_sc0000434.1_g000019 Rmu_sc0000441.1_g000118 Rmu_sc0000533.1_g000054 Rmu_sc0000533.1_g000055 Rmu_sc0000595.1_g000041 Rmu_sc0000663.1_g000019 Rmu_sc0000673.1_g000002 Rmu_sc0000698.1_g000102 Rmu_sc0000745.1_g000007 Rmu_sc0000768.1_g000018 Rmu_sc0000811.1_g000012 Rmu_sc0000826.1_g000009 Rmu_sc0000826.1_g000011 Rmu_sc0001051.1_g000042 Rmu_sc0001051.1_g000043 Rmu_sc0001148.1_g000014 Rmu_sc0001198.1_g000021 Rmu_sc0001227.1_g000008 Rmu_sc0001250.1_g000028 Rmu_sc0001395.1_g000019 Rmu_sc0001395.1_g000020 Rmu_sc0001396.1_g000002 Rmu_sc0001424.1_g000007 Rmu_sc0001455.1_g000025 Rmu_sc0001455.1_g000029 Rmu_sc0001499.1_g000036 Rmu_sc0001539.1_g000001 Rmu_sc0001562.1_g000027 Rmu_sc0001563.1_g000024 Rmu_sc0001719.1_g000022 Rmu_sc0001796.1_g000008 Rmu_sc0001884.1_g000022 Rmu_sc0001903.1_g000018 Rmu_sc0002041.1_g000012 Rmu_sc0002096.1_g000002 Rmu_sc0002126.1_g000027 Rmu_sc0002181.1_g000010 Rmu_sc0002259.1_g000004 Rmu_sc0002279.1_g000018 Rmu_sc0002312.1_g000060 Rmu_sc0002383.1_g000011 Rmu_sc0002401.1_g000012 Rmu_sc0002509.1_g000028 Rmu_sc0002569.1_g000008 Rmu_sc0002587.1_g000037 Rmu_sc0002665.1_g000006 Rmu_sc0002698.1_g000018 Rmu_sc0002724.1_g000002 Rmu_sc0002727.1_g000011 Rmu_sc0002927.1_g000055 Rmu_sc0002927.1_g000056 Rmu_sc0002943.1_g000009 Rmu_sc0002943.1_g000023 Rmu_sc0002998.1_g000001 Rmu_sc0003089.1_g000036 Rmu_sc0003127.1_g000022 Rmu_sc0003127.1_g000040 Rmu_sc0003207.1_g000010 Rmu_sc0003207.1_g000011 Rmu_sc0003275.1_g000034 Rmu_sc0003275.1_g000036 Rmu_sc0003337.1_g000047 Rmu_sc0003376.1_g000004 Rmu_sc0003522.1_g000024 Rmu_sc0003613.1_g000007 Rmu_sc0003708.1_g000026 Rmu_sc0003784.1_g000018 Rmu_sc0004079.1_g000005 Rmu_sc0004092.1_g000017 Rmu_sc0004168.1_g000058 Rmu_sc0004174.1_g000019 Rmu_sc0004199.1_g000049 Rmu_sc0004230.1_g000005 Rmu_sc0004283.1_g000021 Rmu_sc0004283.1_g000022 Rmu_sc0004314.1_g000017 Rmu_sc0004538.1_g000006 Rmu_sc0004542.1_g000011 Rmu_sc0004602.1_g000024 Rmu_sc0004641.1_g000006 Rmu_sc0004862.1_g000011 Rmu_sc0004941.1_g000043 Rmu_sc0005003.1_g000003 Rmu_sc0005112.1_g000018 Rmu_sc0005144.1_g000014 Rmu_sc0005266.1_g000014 Rmu_sc0005418.1_g000004 Rmu_sc0005627.1_g000006 Rmu_sc0005652.1_g000022 Rmu_sc0005747.1_g000032 Rmu_sc0005982.1_g000013 Rmu_sc0006050.1_g000017 Rmu_sc0006059.1_g000035 Rmu_sc0006128.1_g000002 Rmu_sc0006228.1_g000009 Rmu_sc0006243.1_g000009 Rmu_sc0006300.1_g000004 Rmu_sc0006463.1_g000007 Rmu_sc0006579.1_g000016 Rmu_sc0006595.1_g000011 Rmu_sc0006624.1_g000006 Rmu_sc0006624.1_g000007 Rmu_sc0006624.1_g000008 Rmu_sc0006674.1_g000025 Rmu_sc0006792.1_g000013 Rmu_sc0006872.1_g000022 Rmu_sc0006984.1_g000009 Rmu_sc0006984.1_g000010 Rmu_sc0006986.1_g000011 Rmu_sc0007016.1_g000001 Rmu_sc0007221.1_g000006 Rmu_sc0007222.1_g000005 Rmu_sc0007222.1_g000006 Rmu_sc0007251.1_g000001 Rmu_sc0007777.1_g000037 Rmu_sc0007826.1_g000018 Rmu_sc0008053.1_g000015 Rmu_sc0008502.1_g000006 Rmu_sc0008659.1_g000009 Rmu_sc0009045.1_g000009 Rmu_sc0009045.1_g000010 Rmu_sc0009060.1_g000012 Rmu_sc0009360.1_g000024 Rmu_sc0009431.1_g000001 Rmu_sc0009606.1_g000014 Rmu_sc0009774.1_g000001 Rmu_sc0009844.1_g000014 Rmu_sc0010313.1_g000001 Rmu_sc0010454.1_g000008 Rmu_sc0010543.1_g000016 Rmu_sc0010900.1_g000002 Rmu_sc0010925.1_g000009 Rmu_sc0011136.1_g000012 Rmu_sc0011534.1_g000004 Rmu_sc0011809.1_g000007 Rmu_sc0011917.1_g000005 Rmu_sc0012103.1_g000001 Rmu_sc0012287.1_g000001 Rmu_sc0012303.1_g000007 Rmu_sc0012344.1_g000009 Rmu_sc0012674.1_g000007 Rmu_sc0012686.1_g000001 Rmu_sc0012742.1_g000005 Rmu_sc0012746.1_g000026 Rmu_sc0012746.1_g000027 Rmu_sc0013419.1_g000008 Rmu_sc0014866.1_g000004 Rmu_sc0015325.1_g000011 Rmu_sc0015486.1_g000005 Rmu_sc0015651.1_g000002 Rmu_sc0015783.1_g000001 Rmu_sc0016387.1_g000009 Rmu_sc0017518.1_g000005 Rmu_sc0018480.1_g000001 Rmu_sc0018537.1_g000003 Rmu_sc0019200.1_g000002 Rmu_sc0019544.1_g000014 Rmu_sc0019544.1_g000015 Rmu_sc0019873.1_g000001 Rmu_sc0020392.1_g000001 Rmu_sc0020466.1_g000001 Rmu_sc0022008.1_g000001 Rmu_sc0022008.1_g000002 Rmu_sc0022274.1_g000001 Rmu_sc0023644.1_g000005 Rmu_sc0024657.1_g000001 Rmu_sc0024721.1_g000003 Rmu_sc0025790.1_g000001 Rmu_sc0026866.1_g000001 Rmu_sc0027363.1_g000002 Rmu_sc0027485.1_g000001 Rmu_sc0028394.1_g000001 Rmu_sc0033121.1_g000002 Rmu_sc0033838.1_g000001 Rmu_sc0035536.1_g000001 Rmu_sc0036296.1_g000001 Rmu_sc0036297.1_g000001 Rmu_sc0036298.1_g000001 Rmu_sc0036797.1_g000001 Rmu_sc0037010.1_g000001 Rmu_sc0037444.1_g000002 Rmu_sc0039012.1_g000002 Rmu_sc0040172.1_g000001 Rmu_sc0042083.1_g000001 Rmu_ssc0000018.1_g000001 Rmu_ssc0000171.1_g000032 Rmu_ssc0000213.1_g000064 Rmu_ssc0000213.1_g000096 Rmu_ssc0000262.1_g000017 Rmu_ssc0000295.1_g000036 Rmu_ssc0000343.1_g000008 Rmu_ssc0000398.1_g000003 Rmu_ssc0000400.1_g000085 Rmu_ssc0000438.1_g000007 Rmu_ssc0000478.1_g000003
rosa_roxburghii Rroxscaffold_166G00440710 Rroxscaffold_166G00440720 Rroxscaffold_174G00435300 Rroxscaffold_174G00435310 Rroxscaffold_177G00434290 Rroxscaffold_177G00434300 Rroxscaffold_177G00434310 Rroxscaffold_178G00437310 Rroxscaffold_1G00002500 Rroxscaffold_1G00004730 Rroxscaffold_1G00008660 Rroxscaffold_1G00008670 Rroxscaffold_1G00008680 Rroxscaffold_1G00008690 Rroxscaffold_1G00010260 Rroxscaffold_1G00015670 Rroxscaffold_1G00021140 Rroxscaffold_1G00024380 Rroxscaffold_1G00032420 Rroxscaffold_1G00050600 Rroxscaffold_1G00050610 Rroxscaffold_1G00055970 Rroxscaffold_1G00066220 Rroxscaffold_2G00085370 Rroxscaffold_2G00092350 Rroxscaffold_2G00092360 Rroxscaffold_2G00093350 Rroxscaffold_2G00097090 Rroxscaffold_2G00108040 Rroxscaffold_2G00109970 Rroxscaffold_2G00111470 Rroxscaffold_2G00111480 Rroxscaffold_2G00112000 Rroxscaffold_2G00112060 Rroxscaffold_2G00129160 Rroxscaffold_2G00132340 Rroxscaffold_2G00136720 Rroxscaffold_2G00152910 Rroxscaffold_3G00223160 Rroxscaffold_3G00223170 Rroxscaffold_3G00223520 Rroxscaffold_3G00230980 Rroxscaffold_3G00245030 Rroxscaffold_3G00259050 Rroxscaffold_3G00259060 Rroxscaffold_3G00259070 Rroxscaffold_3G00267470 Rroxscaffold_3G00272040 Rroxscaffold_3G00272440 Rroxscaffold_3G00272450 Rroxscaffold_4G00285860 Rroxscaffold_4G00285870 Rroxscaffold_4G00294380 Rroxscaffold_4G00294390 Rroxscaffold_4G00297890 Rroxscaffold_4G00298150 Rroxscaffold_4G00303090 Rroxscaffold_4G00306480 Rroxscaffold_4G00306680 Rroxscaffold_4G00310490 Rroxscaffold_4G00310630 Rroxscaffold_4G00310670 Rroxscaffold_4G00310680 Rroxscaffold_4G00310690 Rroxscaffold_4G00317930 Rroxscaffold_4G00320190 Rroxscaffold_4G00323370 Rroxscaffold_4G00323380 Rroxscaffold_4G00324200 Rroxscaffold_4G00331220 Rroxscaffold_5G00339230 Rroxscaffold_5G00341260 Rroxscaffold_5G00343120 Rroxscaffold_5G00345440 Rroxscaffold_5G00345450 Rroxscaffold_5G00353190 Rroxscaffold_5G00353420 Rroxscaffold_5G00356560 Rroxscaffold_5G00359790 Rroxscaffold_5G00381710 Rroxscaffold_5G00381720 Rroxscaffold_5G00386250 Rroxscaffold_5G00387520 Rroxscaffold_6G00390180 Rroxscaffold_6G00392810 Rroxscaffold_6G00401230 Rroxscaffold_6G00402640 Rroxscaffold_6G00405640 Rroxscaffold_6G00405650 Rroxscaffold_6G00405850 Rroxscaffold_6G00405860 Rroxscaffold_6G00412020 Rroxscaffold_6G00415690 Rroxscaffold_6G00415700 Rroxscaffold_7G00168110 Rroxscaffold_7G00178950 Rroxscaffold_7G00178960 Rroxscaffold_7G00193670 Rroxscaffold_7G00203020 Rroxscaffold_7G00203340 Rroxscaffold_7G00203550 Rroxscaffold_7G00207220 Rroxscaffold_7G00207250 Rroxscaffold_7G00207430 Rroxscaffold_7G00209310 Rroxscaffold_7G00211530 Rroxscaffold_7G00211540 Rroxscaffold_7G00214160 Rroxscaffold_7G00216040 Rroxscaffold_7G00216800
rosa_samantha Rh1AG276800 Rh1CG260400 Rh3CG366700
rosa_wichuraiana Rw1G001440 Rw3G029210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 194
AccB1I GGYRCC 1 cut(s) 194
AccB7I CCANNNNNTGG 1 cut(s) 220
AciI CCGC 3 cut(s) 5, 192, 201
AclWI GGATC 1 cut(s) 15
AfaI GTAC 1 cut(s) 196
AfiI CCNNNNNNNGG 3 cut(s) 45, 220, 245
AgeI ACCGGT 1 cut(s) 137
AjnI CCWGG 1 cut(s) 65
AluBI AGCT 1 cut(s) 83
AluI AGCT 1 cut(s) 83
AlwI GGATC 1 cut(s) 15
AoxI GGCC 2 cut(s) 171, 247
ArsI GACNNNNNNTTYG 2 cut(s) 124, 156
AsiGI ACCGGT 1 cut(s) 137
Asp718I GGTACC 1 cut(s) 194
AspLEI GCGC 1 cut(s) 26
AspS9I GGNCC 2 cut(s) 171, 248
AsuC2I CCSGG 2 cut(s) 116, 246
AsuII TTCGAA 1 cut(s) 130
BanI GGYRCC 1 cut(s) 194
BccI CCATC 2 cut(s) 14, 240
BciT130I CCWGG 1 cut(s) 67
BcnI CCSGG 2 cut(s) 116, 246
BfoI RGCGCY 1 cut(s) 27
Bme1390I CCNGG 3 cut(s) 67, 116, 246
BmgT120I GGNCC 2 cut(s) 171, 248
BmiI GGNNCC 1 cut(s) 196
BmrFI CCNGG 3 cut(s) 67, 116, 246
Bpu14I TTCGAA 1 cut(s) 130
BpuMI CCSGG 2 cut(s) 116, 246
BsaWI WCCGGW 1 cut(s) 137
Bsc4I CCNNNNNNNGG 3 cut(s) 45, 220, 245
Bse118I RCCGGY 1 cut(s) 137
BseBI CCWGG 1 cut(s) 67
BseGI GGATG 2 cut(s) 25, 232
BseLI CCNNNNNNNGG 3 cut(s) 45, 220, 245
BseRI GAGGAG 2 cut(s) 228, 231
BshFI GGCC 2 cut(s) 173, 249
BshNI GGYRCC 1 cut(s) 194
BshTI ACCGGT 1 cut(s) 137
BsiSI CCGG 3 cut(s) 116, 138, 246
BslI CCNNNNNNNGG 3 cut(s) 45, 220, 245
BsnI GGCC 2 cut(s) 173, 249
Bsp119I TTCGAA 1 cut(s) 130
Bsp143I GATC 1 cut(s) 7
BspACI CCGC 3 cut(s) 5, 192, 201
BspANI GGCC 2 cut(s) 173, 249
BspLI GGNNCC 1 cut(s) 196
BspPI GGATC 1 cut(s) 15
BspT104I TTCGAA 1 cut(s) 130
BspT107I GGYRCC 1 cut(s) 194
BsrFI RCCGGY 1 cut(s) 137
BssAI RCCGGY 1 cut(s) 137
BssMI GATC 1 cut(s) 7
Bst2UI CCWGG 1 cut(s) 67
Bst6I CTCTTC 1 cut(s) 132
BstBI TTCGAA 1 cut(s) 130
BstC8I GCNNGC 2 cut(s) 175, 211
BstF5I GGATG 2 cut(s) 25, 232
BstH2I RGCGCY 1 cut(s) 27
BstHHI GCGC 1 cut(s) 26
BstKTI GATC 1 cut(s) 10
BstMBI GATC 1 cut(s) 7
BstMWI GCNNNNNNNGC 3 cut(s) 21, 32, 215
BstNI CCWGG 1 cut(s) 67
BstNSI RCATGY 1 cut(s) 162
BstSCI CCNGG 3 cut(s) 65, 114, 244
BstX2I RGATCY 1 cut(s) 7
BstYI RGATCY 1 cut(s) 7
BsuRI GGCC 2 cut(s) 173, 249
BtsCI GGATG 2 cut(s) 25, 232
Cac8I GCNNGC 2 cut(s) 175, 211
CfoI GCGC 1 cut(s) 26
Cfr10I RCCGGY 1 cut(s) 137
Cfr13I GGNCC 2 cut(s) 171, 248
Csp6I GTAC 1 cut(s) 195
CspAI ACCGGT 1 cut(s) 137
CviAII CATG 3 cut(s) 150, 159, 215
CviJI RGCY 3 cut(s) 83, 173, 249
CviKI_1 RGCY 3 cut(s) 83, 173, 249
CviQI GTAC 1 cut(s) 195
DpnI GATC 1 cut(s) 9
DpnII GATC 1 cut(s) 7
Eam1104I CTCTTC 1 cut(s) 132
EarI CTCTTC 1 cut(s) 132
EciI GGCGGA 1 cut(s) 20
EcoRII CCWGG 1 cut(s) 65
FaeI CATG 3 cut(s) 153, 162, 218
FaiI YATR 7 cut(s) 61, 63, 89, 151, 160, 216, 221
FatI CATG 3 cut(s) 149, 158, 214
FokI GGATG 2 cut(s) 32, 219
GlaI GCGC 1 cut(s) 25
HaeII RGCGCY 1 cut(s) 27
HaeIII GGCC 2 cut(s) 173, 249
HapII CCGG 3 cut(s) 116, 138, 246
HhaI GCGC 1 cut(s) 26
Hin1II CATG 3 cut(s) 153, 162, 218
Hin6I GCGC 1 cut(s) 24
HinP1I GCGC 1 cut(s) 24
HinfI GANTC 1 cut(s) 70
HpaII CCGG 3 cut(s) 116, 138, 246
Hpy166II GTNNAC 1 cut(s) 185
Hpy188III TCNNGA 1 cut(s) 77
Hpy8I GTNNAC 1 cut(s) 185
Hpy99I CGWCG 2 cut(s) 48, 78
HpyAV CCTTC 1 cut(s) 162
HpyCH4V TGCA 1 cut(s) 158
HpyF10VI GCNNNNNNNGC 3 cut(s) 21, 32, 215
Hsp92II CATG 3 cut(s) 153, 162, 218
HspAI GCGC 1 cut(s) 24
KpnI GGTACC 1 cut(s) 198
Kzo9I GATC 1 cut(s) 7
LmnI GCTCC 1 cut(s) 48
LpnPI CCDG 5 cut(s) 52, 79, 129, 151, 187
MaeIII GTNAC 2 cut(s) 121, 140
MalI GATC 1 cut(s) 9
MboI GATC 1 cut(s) 7
MboII GAAGA 2 cut(s) 119, 144
MflI RGATCY 1 cut(s) 7
MlyI GAGTC 1 cut(s) 79
MnlI CCTC 4 cut(s) 208, 246, 249, 252
MspI CCGG 3 cut(s) 116, 138, 246
MspR9I CCNGG 3 cut(s) 67, 116, 246
MvaI CCWGG 1 cut(s) 67
MwoI GCNNNNNNNGC 3 cut(s) 21, 32, 215
NciI CCSGG 2 cut(s) 116, 246
NdeII GATC 1 cut(s) 7
NlaIII CATG 3 cut(s) 153, 162, 218
NlaIV GGNNCC 1 cut(s) 196
NmuCI GTSAC 1 cut(s) 140
NspI RCATGY 1 cut(s) 162
NspV TTCGAA 1 cut(s) 130
PflMI CCANNNNNTGG 1 cut(s) 220
PinAI ACCGGT 1 cut(s) 137
PleI GAGTC 1 cut(s) 78
PpsI GAGTC 1 cut(s) 78
Psp6I CCWGG 1 cut(s) 65
PspGI CCWGG 1 cut(s) 65
PspN4I GGNNCC 1 cut(s) 196
PspPI GGNCC 2 cut(s) 171, 248
PsuI RGATCY 1 cut(s) 7
RsaI GTAC 1 cut(s) 196
RsaNI GTAC 1 cut(s) 195
Sau3AI GATC 1 cut(s) 7
Sau96I GGNCC 2 cut(s) 171, 248
SchI GAGTC 1 cut(s) 79
ScrFI CCNGG 3 cut(s) 67, 116, 246
SetI ASST 4 cut(s) 33, 85, 112, 200
SfuI TTCGAA 1 cut(s) 130
SsiI CCGC 3 cut(s) 5, 192, 201
StyD4I CCNGG 3 cut(s) 65, 114, 244
TaqI TCGA 1 cut(s) 130
TseFI GTSAC 1 cut(s) 140
Tsp45I GTSAC 1 cut(s) 140
TspGWI ACGGA 1 cut(s) 61
Van91I CCANNNNNTGG 1 cut(s) 220
XceI RCATGY 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.