Retrotransposon gag protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 274 |
| AatII | GACGTC | 1 cut(s) | 847 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 122, 632 |
| AccBSI | CCGCTC | 1 cut(s) | 593 |
| AccI | GTMKAC | 1 cut(s) | 13 |
| AccII | CGCG | 3 cut(s) | 255, 321, 852 |
| AciI | CCGC | 7 cut(s) | 93, 237, 321, 418, 469, 591, 850 |
| AclWI | GGATC | 5 cut(s) | 84, 97, 512, 617, 768 |
| AcoI | YGGCCR | 2 cut(s) | 124, 334 |
| AcuI | CTGAAG | 1 cut(s) | 847 |
| AcyI | GRCGYC | 1 cut(s) | 844 |
| AfaI | GTAC | 1 cut(s) | 100 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 122, 141, 343, 427, 632, 794 |
| AgsI | TTSAA | 1 cut(s) | 552 |
| AjiI | CACGTC | 1 cut(s) | 162 |
| AjnI | CCWGG | 6 cut(s) | 49, 115, 140, 336, 722, 808 |
| AleI | CACNNNNGTG | 1 cut(s) | 651 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 831, 863 |
| AluBI | AGCT | 5 cut(s) | 482, 569, 661, 747, 825 |
| AluI | AGCT | 5 cut(s) | 482, 569, 661, 747, 825 |
| Alw26I | GTCTC | 3 cut(s) | 152, 675, 851 |
| AlwI | GGATC | 5 cut(s) | 84, 97, 512, 617, 768 |
| AoxI | GGCC | 4 cut(s) | 124, 202, 334, 465 |
| ApaI | GGGCCC | 1 cut(s) | 206 |
| ApeKI | GCWGC | 3 cut(s) | 355, 616, 744 |
| AspLEI | GCGC | 2 cut(s) | 257, 854 |
| AspS9I | GGNCC | 4 cut(s) | 202, 203, 228, 466 |
| AsuHPI | GGTGA | 3 cut(s) | 777, 825, 929 |
| AvaII | GGWCC | 1 cut(s) | 228 |
| AxyI | CCTNAGG | 1 cut(s) | 198 |
| BaeGI | GKGCMC | 1 cut(s) | 206 |
| BalI | TGGCCA | 2 cut(s) | 126, 336 |
| BamHI | GGATCC | 1 cut(s) | 89 |
| BanII | GRGCYC | 1 cut(s) | 206 |
| BbvI | GCAGC | 3 cut(s) | 367, 628, 756 |
| BccI | CCATC | 2 cut(s) | 421, 796 |
| BceAI | ACGGC | 1 cut(s) | 56 |
| BciT130I | CCWGG | 6 cut(s) | 51, 117, 142, 338, 724, 810 |
| BciVI | GTATCC | 1 cut(s) | 747 |
| BclI | TGATCA | 3 cut(s) | 181, 574, 643 |
| BcoDI | GTCTC | 3 cut(s) | 152, 675, 851 |
| BfaI | CTAG | 6 cut(s) | 147, 412, 447, 570, 691, 855 |
| BfmI | CTRYAG | 1 cut(s) | 759 |
| BfuI | GTATCC | 1 cut(s) | 747 |
| BisI | GCNGC | 4 cut(s) | 356, 418, 617, 745 |
| BlsI | GCNGC | 4 cut(s) | 357, 419, 618, 746 |
| Bme1390I | CCNGG | 6 cut(s) | 51, 117, 142, 338, 724, 810 |
| Bme18I | GGWCC | 1 cut(s) | 228 |
| BmgBI | CACGTC | 1 cut(s) | 162 |
| BmgT120I | GGNCC | 4 cut(s) | 202, 203, 228, 466 |
| BmiI | GGNNCC | 6 cut(s) | 91, 204, 229, 503, 589, 910 |
| BmrFI | CCNGG | 6 cut(s) | 51, 117, 142, 338, 724, 810 |
| BmsI | GCATC | 2 cut(s) | 677, 677 |
| BpuEI | CTTGAG | 3 cut(s) | 366, 870, 906 |
| BsaHI | GRCGYC | 1 cut(s) | 844 |
| BsaJI | CCNNGG | 2 cut(s) | 723, 809 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 831, 861 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 122, 141, 343, 427, 632, 794 |
| Bse1I | ACTGG | 1 cut(s) | 626 |
| Bse21I | CCTNAGG | 1 cut(s) | 198 |
| Bse3DI | GCAATG | 2 cut(s) | 357, 478 |
| BseBI | CCWGG | 6 cut(s) | 51, 117, 142, 338, 724, 810 |
| BseDI | CCNNGG | 2 cut(s) | 723, 809 |
| BseGI | GGATG | 1 cut(s) | 376 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 122, 141, 343, 427, 632, 794 |
| BseMI | GCAATG | 2 cut(s) | 357, 478 |
| BseMII | CTCAG | 3 cut(s) | 525, 689, 937 |
| BseNI | ACTGG | 1 cut(s) | 626 |
| BseRI | GAGGAG | 6 cut(s) | 124, 127, 189, 663, 813, 849 |
| BseSI | GKGCMC | 1 cut(s) | 206 |
| BseXI | GCAGC | 3 cut(s) | 367, 628, 756 |
| BsgI | GTGCAG | 2 cut(s) | 407, 719 |
| Bsh1236I | CGCG | 3 cut(s) | 255, 321, 852 |
| BshFI | GGCC | 4 cut(s) | 126, 204, 336, 467 |
| BslFI | GGGAC | 1 cut(s) | 241 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 122, 141, 343, 427, 632, 794 |
| BsmAI | GTCTC | 3 cut(s) | 152, 675, 851 |
| BsmBI | CGTCTC | 2 cut(s) | 152, 851 |
| BsmFI | GGGAC | 1 cut(s) | 241 |
| BsnI | GGCC | 4 cut(s) | 126, 204, 336, 467 |
| Bsp120I | GGGCCC | 1 cut(s) | 202 |
| Bsp1286I | GDGCHC | 1 cut(s) | 206 |
| Bsp143I | GATC | 7 cut(s) | 89, 181, 517, 574, 622, 643, 773 |
| BspACI | CCGC | 7 cut(s) | 93, 237, 321, 418, 469, 591, 850 |
| BspANI | GGCC | 4 cut(s) | 126, 204, 336, 467 |
| BspCNI | CTCAG | 3 cut(s) | 526, 688, 938 |
| BspFNI | CGCG | 3 cut(s) | 255, 321, 852 |
| BspLI | GGNNCC | 6 cut(s) | 91, 204, 229, 503, 589, 910 |
| BspPI | GGATC | 5 cut(s) | 84, 97, 512, 617, 768 |
| BsrBI | CCGCTC | 1 cut(s) | 593 |
| BsrDI | GCAATG | 2 cut(s) | 357, 478 |
| BsrI | ACTGG | 1 cut(s) | 626 |
| BssECI | CCNNGG | 2 cut(s) | 723, 809 |
| BssMI | GATC | 7 cut(s) | 89, 181, 517, 574, 622, 643, 773 |
| BssNI | GRCGYC | 1 cut(s) | 844 |
| Bst2UI | CCWGG | 6 cut(s) | 51, 117, 142, 338, 724, 810 |
| Bst4CI | ACNGT | 2 cut(s) | 455, 740 |
| Bst6I | CTCTTC | 2 cut(s) | 160, 826 |
| BstACI | GRCGYC | 1 cut(s) | 844 |
| BstC8I | GCNNGC | 3 cut(s) | 113, 253, 469 |
| BstDEI | CTNAG | 5 cut(s) | 198, 534, 675, 904, 946 |
| BstF5I | GGATG | 1 cut(s) | 376 |
| BstFNI | CGCG | 3 cut(s) | 255, 321, 852 |
| BstHHI | GCGC | 2 cut(s) | 257, 854 |
| BstKTI | GATC | 7 cut(s) | 92, 184, 520, 577, 625, 646, 776 |
| BstMAI | GTCTC | 3 cut(s) | 152, 675, 851 |
| BstMBI | GATC | 7 cut(s) | 89, 181, 517, 574, 622, 643, 773 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 117 |
| BstNI | CCWGG | 6 cut(s) | 51, 117, 142, 338, 724, 810 |
| BstSCI | CCNGG | 6 cut(s) | 49, 115, 140, 336, 722, 808 |
| BstSFI | CTRYAG | 1 cut(s) | 759 |
| BstSLI | GKGCMC | 1 cut(s) | 206 |
| BstUI | CGCG | 3 cut(s) | 255, 321, 852 |
| BstV1I | GCAGC | 3 cut(s) | 367, 628, 756 |
| BstX2I | RGATCY | 2 cut(s) | 89, 517 |
| BstYI | RGATCY | 2 cut(s) | 89, 517 |
| Bsu36I | CCTNAGG | 1 cut(s) | 198 |
| BsuI | GTATCC | 1 cut(s) | 747 |
| BsuRI | GGCC | 4 cut(s) | 126, 204, 336, 467 |
| BtrI | CACGTC | 1 cut(s) | 162 |
| BtsCI | GGATG | 1 cut(s) | 376 |
| BtsI | GCAGTG | 1 cut(s) | 731 |
| BtsIMutI | CAGTG | 4 cut(s) | 310, 460, 731, 745 |
| Cac8I | GCNNGC | 3 cut(s) | 113, 253, 469 |
| CfoI | GCGC | 2 cut(s) | 257, 854 |
| Cfr13I | GGNCC | 4 cut(s) | 202, 203, 228, 466 |
| CseI | GACGC | 1 cut(s) | 691 |
| Csp6I | GTAC | 1 cut(s) | 99 |
| CviAII | CATG | 3 cut(s) | 18, 612, 620 |
| CviQI | GTAC | 1 cut(s) | 99 |
| DdeI | CTNAG | 5 cut(s) | 198, 534, 675, 904, 946 |
| DpnI | GATC | 7 cut(s) | 91, 183, 519, 576, 624, 645, 775 |
| DpnII | GATC | 7 cut(s) | 89, 181, 517, 574, 622, 643, 773 |
| EaeI | YGGCCR | 2 cut(s) | 124, 334 |
| Eam1104I | CTCTTC | 2 cut(s) | 160, 826 |
| EarI | CTCTTC | 2 cut(s) | 160, 826 |
| EciI | GGCGGA | 1 cut(s) | 82 |
| Eco24I | GRGCYC | 1 cut(s) | 206 |
| Eco32I | GATATC | 1 cut(s) | 901 |
| Eco47I | GGWCC | 1 cut(s) | 228 |
| Eco57I | CTGAAG | 1 cut(s) | 847 |
| Eco81I | CCTNAGG | 1 cut(s) | 198 |
| EcoO109I | RGGNCCY | 2 cut(s) | 202, 228 |
| EcoRII | CCWGG | 6 cut(s) | 49, 115, 140, 336, 722, 808 |
| EcoRV | GATATC | 1 cut(s) | 901 |
| EcoT38I | GRGCYC | 1 cut(s) | 206 |
| Esp3I | CGTCTC | 2 cut(s) | 152, 851 |
| FaeI | CATG | 3 cut(s) | 21, 615, 623 |
| FaqI | GGGAC | 1 cut(s) | 241 |
| FatI | CATG | 3 cut(s) | 17, 611, 619 |
| FauI | CCCGC | 2 cut(s) | 244, 476 |
| FauNDI | CATATG | 1 cut(s) | 716 |
| FbaI | TGATCA | 3 cut(s) | 181, 574, 643 |
| FblI | GTMKAC | 1 cut(s) | 13 |
| Fnu4HI | GCNGC | 4 cut(s) | 356, 418, 617, 745 |
| FokI | GGATG | 1 cut(s) | 363 |
| FriOI | GRGCYC | 1 cut(s) | 206 |
| Fsp4HI | GCNGC | 4 cut(s) | 356, 418, 617, 745 |
| FspBI | CTAG | 6 cut(s) | 147, 412, 447, 570, 691, 855 |
| GlaI | GCGC | 2 cut(s) | 256, 853 |
| GluI | GCNGC | 4 cut(s) | 356, 418, 617, 745 |
| HaeIII | GGCC | 4 cut(s) | 126, 204, 336, 467 |
| HgaI | GACGC | 1 cut(s) | 691 |
| HhaI | GCGC | 2 cut(s) | 257, 854 |
| Hin1I | GRCGYC | 1 cut(s) | 844 |
| Hin1II | CATG | 3 cut(s) | 21, 615, 623 |
| Hin6I | GCGC | 2 cut(s) | 255, 852 |
| HinP1I | GCGC | 2 cut(s) | 255, 852 |
| HinfI | GANTC | 1 cut(s) | 510 |
| HphI | GGTGA | 3 cut(s) | 777, 825, 929 |
| Hpy166II | GTNNAC | 1 cut(s) | 14 |
| Hpy188I | TCNGA | 3 cut(s) | 444, 515, 678 |
| Hpy188III | TCNNGA | 5 cut(s) | 68, 147, 412, 521, 549 |
| Hpy8I | GTNNAC | 1 cut(s) | 14 |
| Hpy99I | CGWCG | 1 cut(s) | 846 |
| HpyCH4III | ACNGT | 2 cut(s) | 455, 740 |
| HpyCH4IV | ACGT | 2 cut(s) | 161, 844 |
| HpyCH4V | TGCA | 4 cut(s) | 350, 355, 388, 736 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 117 |
| HpyF3I | CTNAG | 5 cut(s) | 198, 534, 675, 904, 946 |
| HpySE526I | ACGT | 2 cut(s) | 161, 844 |
| Hsp92I | GRCGYC | 1 cut(s) | 844 |
| Hsp92II | CATG | 3 cut(s) | 21, 615, 623 |
| HspAI | GCGC | 2 cut(s) | 255, 852 |
| Ksp22I | TGATCA | 3 cut(s) | 181, 574, 643 |
| Kzo9I | GATC | 7 cut(s) | 89, 181, 517, 574, 622, 643, 773 |
| LmnI | GCTCC | 3 cut(s) | 501, 598, 908 |
| Lsp1109I | GCAGC | 3 cut(s) | 367, 628, 756 |
| LweI | GCATC | 2 cut(s) | 677, 677 |
| MaeI | CTAG | 6 cut(s) | 147, 412, 447, 570, 691, 855 |
| MaeII | ACGT | 2 cut(s) | 161, 844 |
| MaeIII | GTNAC | 1 cut(s) | 323 |
| MalI | GATC | 7 cut(s) | 91, 183, 519, 576, 624, 645, 775 |
| MbiI | CCGCTC | 1 cut(s) | 593 |
| MboI | GATC | 7 cut(s) | 89, 181, 517, 574, 622, 643, 773 |
| MboII | GAAGA | 5 cut(s) | 177, 828, 840, 843, 884 |
| MflI | RGATCY | 2 cut(s) | 89, 517 |
| MhlI | GDGCHC | 1 cut(s) | 206 |
| MlsI | TGGCCA | 2 cut(s) | 126, 336 |
| MluCI | AATT | 4 cut(s) | 32, 401, 558, 858 |
| MluNI | TGGCCA | 2 cut(s) | 126, 336 |
| MlyI | GAGTC | 1 cut(s) | 519 |
| MmeI | TCCRAC | 2 cut(s) | 467, 620 |
| Mox20I | TGGCCA | 2 cut(s) | 126, 336 |
| MscI | TGGCCA | 2 cut(s) | 126, 336 |
| MseI | TTAA | 2 cut(s) | 861, 894 |
| MslI | CAYNNNNRTG | 1 cut(s) | 651 |
| Msp20I | TGGCCA | 2 cut(s) | 126, 336 |
| MspR9I | CCNGG | 6 cut(s) | 51, 117, 142, 338, 724, 810 |
| MvaI | CCWGG | 6 cut(s) | 51, 117, 142, 338, 724, 810 |
| MvnI | CGCG | 3 cut(s) | 255, 321, 852 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 117 |
| NdeI | CATATG | 1 cut(s) | 716 |
| NdeII | GATC | 7 cut(s) | 89, 181, 517, 574, 622, 643, 773 |
| NlaIII | CATG | 3 cut(s) | 21, 615, 623 |
| NlaIV | GGNNCC | 6 cut(s) | 91, 204, 229, 503, 589, 910 |
| OliI | CACNNNNGTG | 1 cut(s) | 651 |
| PflFI | GACNNNGTC | 1 cut(s) | 216 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 122, 632 |
| PkrI | GCNGC | 4 cut(s) | 357, 419, 618, 746 |
| PleI | GAGTC | 1 cut(s) | 518 |
| PpsI | GAGTC | 1 cut(s) | 518 |
| PpuMI | RGGWCCY | 1 cut(s) | 228 |
| PsiI | TTATAA | 1 cut(s) | 274 |
| Psp5II | RGGWCCY | 1 cut(s) | 228 |
| Psp6I | CCWGG | 6 cut(s) | 49, 115, 140, 336, 722, 808 |
| PspGI | CCWGG | 6 cut(s) | 49, 115, 140, 336, 722, 808 |
| PspN4I | GGNNCC | 6 cut(s) | 91, 204, 229, 503, 589, 910 |
| PspOMI | GGGCCC | 1 cut(s) | 202 |
| PspPI | GGNCC | 4 cut(s) | 202, 203, 228, 466 |
| PspPPI | RGGWCCY | 1 cut(s) | 228 |
| PsuI | RGATCY | 2 cut(s) | 89, 517 |
| PsyI | GACNNNGTC | 1 cut(s) | 216 |
| RsaI | GTAC | 1 cut(s) | 100 |
| RsaNI | GTAC | 1 cut(s) | 99 |
| RseI | CAYNNNNRTG | 1 cut(s) | 651 |
| SaqAI | TTAA | 2 cut(s) | 861, 894 |
| SatI | GCNGC | 4 cut(s) | 356, 418, 617, 745 |
| Sau3AI | GATC | 7 cut(s) | 89, 181, 517, 574, 622, 643, 773 |
| Sau96I | GGNCC | 4 cut(s) | 202, 203, 228, 466 |
| SchI | GAGTC | 1 cut(s) | 519 |
| ScrFI | CCNGG | 6 cut(s) | 51, 117, 142, 338, 724, 810 |
| SduI | GDGCHC | 1 cut(s) | 206 |
| SfaNI | GCATC | 2 cut(s) | 677, 677 |
| SfcI | CTRYAG | 1 cut(s) | 759 |
| SinI | GGWCC | 1 cut(s) | 228 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 651 |
| SmlI | CTYRAG | 3 cut(s) | 381, 885, 921 |
| SmoI | CTYRAG | 3 cut(s) | 381, 885, 921 |
| Sse9I | AATT | 4 cut(s) | 32, 401, 558, 858 |
| SsiI | CCGC | 7 cut(s) | 93, 237, 321, 418, 469, 591, 850 |
| SspMI | CTAG | 6 cut(s) | 147, 412, 447, 570, 691, 855 |
| StyD4I | CCNGG | 6 cut(s) | 49, 115, 140, 336, 722, 808 |
| TaaI | ACNGT | 2 cut(s) | 455, 740 |
| TaiI | ACGT | 2 cut(s) | 164, 847 |
| TasI | AATT | 4 cut(s) | 32, 401, 558, 858 |
| TauI | GCSGC | 1 cut(s) | 420 |
| Tru1I | TTAA | 2 cut(s) | 861, 894 |
| Tru9I | TTAA | 2 cut(s) | 861, 894 |
| TscAI | CASTG | 4 cut(s) | 317, 460, 738, 745 |
| TseI | GCWGC | 3 cut(s) | 355, 616, 744 |
| TspDTI | ATGAA | 2 cut(s) | 34, 835 |
| TspRI | CASTG | 4 cut(s) | 317, 460, 738, 745 |
| Tth111I | GACNNNGTC | 1 cut(s) | 216 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 122, 632 |
| VpaK11BI | GGWCC | 1 cut(s) | 228 |
| XbaI | TCTAGA | 2 cut(s) | 146, 411 |
| XmiI | GTMKAC | 1 cut(s) | 13 |
| XspI | CTAG | 6 cut(s) | 147, 412, 447, 570, 691, 855 |
| ZraI | GACGTC | 1 cut(s) | 845 |