Rmu_sc0001250.1_g000028

Retrotransposon gag protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001250.1
OG0000057
Physical Location & Seq
Forward (+)
137094 .. 141238
4145 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001250.1_g000028.1.cds

Sequence Viewer

Length: 1563 bp
atgtcatggatttctgggagatatagtttgtggagagaagctcttgacatgggtcttgagcagagtctacaagcggtttcaagaggcttacaggtgatcatctcagagagagagagagaagaggtcgaatctggtggtggtggtggtggtggttattttattttattttatttttatcttgaattgtgtggagagaagctcttgacatgggtcttgagcagagtctacaagcggtttcaagaggcttacaggcaaaagaagaaccctgtagcgaggttggtgctctcctcgtccacaactcttgaagaagaagtcaggtcaagggactcccccgacgactgcaccccaaggtgctggcacgcctgcgcaatcacacactcaaaagagacagtttgcacaccaactgccattgggaagtctagcgaaaacccttaccaaaaggtttacgctaactgctcaaagcataagacctccagttacagaccgcactctcgcgcgaactgtcgtggtctttctgaagaacaagtgactcaaagattctctcgtcagtcccaatcacccaacatgtcaactgaacgagaagagaaccacccgaccgttactgaaggtccgggtgttaatactaatcaggccagcgagcctgttatccccaccacagtcaccactatagtggggagtggagaaagagaggctttcgttccgaagcctattccagaaggagcgacctccgagaaagccaagctgaacgtcatcttgcctgagaaagatttagtcaagttagcagtcaagggtttggaaccgcgtcaacgaaagaagcagcatggcagcatgattcagtcgatgggagaactcatcacagaagtaggcagcttcgagcatctcctcagagaaacagatgcaaggaagaatgcatccaggggaacatacgtgctgggaaaacatcgtaccgtagcagccctgagctaccagccggctacctatgatccttactaccatcacagcaatgaagaggtggtccaggatggcgacgatgaagaggagaatgatgtcgccgcctacgagttaaccggaaaaaagaatttagccttgaagcaactgaaaatttccaaggaacctgttaagctcaaatcggtggccttcaccaaacctgagttcgcgacatatacatatgatcctaacaaagcacatgagattctagacgaaatgatcgctgcgaagatggtggaagcttcggtcatggcggcagcgctagtagacctagacccctttcctgatactgggatcaatatggtcgatcataaagaggtcgagcaaacatttcactttggctctctaccgcccgtcaagtgggcttcgtcattgcggaactatcaaccttctagcccaagagagaaagagaaaatggagtcaccaccatccctaaaggactccaatttgttcaagaagctaagagcggccgcggtggatcagaaacatgaagaaaagatcacgaacaagtgtaaagatgtactaaccaagccttacatcccaccagcgccagccgccaccatcaaggaaggatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotrans_gag

Protein Analysis

520

Amino Acids

58.23

Weight (kDa)

6.94

Isoelectric Point (pI)

51.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000057)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00341 FvH4_2g18201 FvH4_2g24491 FvH4_2g24511 FvH4_3g22961 FvH4_3g33532 FvH4_3g33534 FvH4_4g05275 FvH4_4g12372 FvH4_5g20143 FvH4_7g12392
pyrus_communis pycom12g16120
rosa_chinensis RchiOBHm_Chr5g0023531 RchiOBHm_Chr6g0271201
rosa_laevigata RLG00000030639
rosa_multiflora Rmu_co8016136.1_g000001 Rmu_co8027180.1_g000001 Rmu_co8041016.1_g000001 Rmu_co8052812.1_g000001 Rmu_co8152468.1_g000001 Rmu_co8165796.1_g000001 Rmu_co8170214.1_g000001 Rmu_co8227433.1_g000001 Rmu_co8241379.1_g000001 Rmu_co8254305.1_g000001 Rmu_co8258647.1_g000001 Rmu_co8265535.1_g000002 Rmu_co8276845.1_g000001 Rmu_co8296303.1_g000001 Rmu_co8304827.1_g000001 Rmu_co8308345.1_g000001 Rmu_co8320493.1_g000002 Rmu_co8326955.1_g000001 Rmu_co8331007.1_g000001 Rmu_co8335625.1_g000001 Rmu_co8354465.1_g000001 Rmu_co8360201.1_g000001 Rmu_co8362075.1_g000002 Rmu_co8362991.1_g000001 Rmu_co8364567.1_g000001 Rmu_co8365273.1_g000001 Rmu_co8387267.1_g000001 Rmu_co8395251.1_g000002 Rmu_co8396677.1_g000001 Rmu_co8457659.1_g000001 Rmu_co8478117.1_g000001 Rmu_co8487163.1_g000001 Rmu_co8498169.1_g000001 Rmu_sc0000029.1_g000022 Rmu_sc0000063.1_g000007 Rmu_sc0000112.1_g000020 Rmu_sc0000146.1_g000006 Rmu_sc0000245.1_g000015 Rmu_sc0000276.1_g000036 Rmu_sc0000334.1_g000033 Rmu_sc0000334.1_g000034 Rmu_sc0000434.1_g000019 Rmu_sc0000441.1_g000118 Rmu_sc0000533.1_g000054 Rmu_sc0000533.1_g000055 Rmu_sc0000595.1_g000041 Rmu_sc0000663.1_g000019 Rmu_sc0000673.1_g000002 Rmu_sc0000698.1_g000102 Rmu_sc0000745.1_g000007 Rmu_sc0000768.1_g000018 Rmu_sc0000811.1_g000012 Rmu_sc0000826.1_g000009 Rmu_sc0000826.1_g000011 Rmu_sc0001051.1_g000042 Rmu_sc0001051.1_g000043 Rmu_sc0001148.1_g000014 Rmu_sc0001198.1_g000021 Rmu_sc0001227.1_g000008 Rmu_sc0001250.1_g000028 Rmu_sc0001395.1_g000019 Rmu_sc0001395.1_g000020 Rmu_sc0001396.1_g000002 Rmu_sc0001424.1_g000007 Rmu_sc0001455.1_g000025 Rmu_sc0001455.1_g000029 Rmu_sc0001499.1_g000036 Rmu_sc0001539.1_g000001 Rmu_sc0001562.1_g000027 Rmu_sc0001563.1_g000024 Rmu_sc0001719.1_g000022 Rmu_sc0001796.1_g000008 Rmu_sc0001884.1_g000022 Rmu_sc0001903.1_g000018 Rmu_sc0002041.1_g000012 Rmu_sc0002096.1_g000002 Rmu_sc0002126.1_g000027 Rmu_sc0002181.1_g000010 Rmu_sc0002259.1_g000004 Rmu_sc0002279.1_g000018 Rmu_sc0002312.1_g000060 Rmu_sc0002383.1_g000011 Rmu_sc0002401.1_g000012 Rmu_sc0002509.1_g000028 Rmu_sc0002569.1_g000008 Rmu_sc0002587.1_g000037 Rmu_sc0002665.1_g000006 Rmu_sc0002698.1_g000018 Rmu_sc0002724.1_g000002 Rmu_sc0002727.1_g000011 Rmu_sc0002927.1_g000055 Rmu_sc0002927.1_g000056 Rmu_sc0002943.1_g000009 Rmu_sc0002943.1_g000023 Rmu_sc0002998.1_g000001 Rmu_sc0003089.1_g000036 Rmu_sc0003127.1_g000022 Rmu_sc0003127.1_g000040 Rmu_sc0003207.1_g000010 Rmu_sc0003207.1_g000011 Rmu_sc0003275.1_g000034 Rmu_sc0003275.1_g000036 Rmu_sc0003337.1_g000047 Rmu_sc0003376.1_g000004 Rmu_sc0003522.1_g000024 Rmu_sc0003613.1_g000007 Rmu_sc0003708.1_g000026 Rmu_sc0003784.1_g000018 Rmu_sc0004079.1_g000005 Rmu_sc0004092.1_g000017 Rmu_sc0004168.1_g000058 Rmu_sc0004174.1_g000019 Rmu_sc0004199.1_g000049 Rmu_sc0004230.1_g000005 Rmu_sc0004283.1_g000021 Rmu_sc0004283.1_g000022 Rmu_sc0004314.1_g000017 Rmu_sc0004538.1_g000006 Rmu_sc0004542.1_g000011 Rmu_sc0004602.1_g000024 Rmu_sc0004641.1_g000006 Rmu_sc0004862.1_g000011 Rmu_sc0004941.1_g000043 Rmu_sc0005003.1_g000003 Rmu_sc0005112.1_g000018 Rmu_sc0005144.1_g000014 Rmu_sc0005266.1_g000014 Rmu_sc0005418.1_g000004 Rmu_sc0005627.1_g000006 Rmu_sc0005652.1_g000022 Rmu_sc0005747.1_g000032 Rmu_sc0005982.1_g000013 Rmu_sc0006050.1_g000017 Rmu_sc0006059.1_g000035 Rmu_sc0006128.1_g000002 Rmu_sc0006228.1_g000009 Rmu_sc0006243.1_g000009 Rmu_sc0006300.1_g000004 Rmu_sc0006463.1_g000007 Rmu_sc0006579.1_g000016 Rmu_sc0006595.1_g000011 Rmu_sc0006624.1_g000006 Rmu_sc0006624.1_g000007 Rmu_sc0006624.1_g000008 Rmu_sc0006674.1_g000025 Rmu_sc0006792.1_g000013 Rmu_sc0006872.1_g000022 Rmu_sc0006984.1_g000009 Rmu_sc0006984.1_g000010 Rmu_sc0006986.1_g000011 Rmu_sc0007016.1_g000001 Rmu_sc0007221.1_g000006 Rmu_sc0007222.1_g000005 Rmu_sc0007222.1_g000006 Rmu_sc0007251.1_g000001 Rmu_sc0007777.1_g000037 Rmu_sc0007826.1_g000018 Rmu_sc0008053.1_g000015 Rmu_sc0008502.1_g000006 Rmu_sc0008659.1_g000009 Rmu_sc0009045.1_g000009 Rmu_sc0009045.1_g000010 Rmu_sc0009060.1_g000012 Rmu_sc0009360.1_g000024 Rmu_sc0009431.1_g000001 Rmu_sc0009606.1_g000014 Rmu_sc0009774.1_g000001 Rmu_sc0009844.1_g000014 Rmu_sc0010313.1_g000001 Rmu_sc0010454.1_g000008 Rmu_sc0010543.1_g000016 Rmu_sc0010900.1_g000002 Rmu_sc0010925.1_g000009 Rmu_sc0011136.1_g000012 Rmu_sc0011534.1_g000004 Rmu_sc0011809.1_g000007 Rmu_sc0011917.1_g000005 Rmu_sc0012103.1_g000001 Rmu_sc0012287.1_g000001 Rmu_sc0012303.1_g000007 Rmu_sc0012344.1_g000009 Rmu_sc0012674.1_g000007 Rmu_sc0012686.1_g000001 Rmu_sc0012742.1_g000005 Rmu_sc0012746.1_g000026 Rmu_sc0012746.1_g000027 Rmu_sc0013419.1_g000008 Rmu_sc0014866.1_g000004 Rmu_sc0015325.1_g000011 Rmu_sc0015486.1_g000005 Rmu_sc0015651.1_g000002 Rmu_sc0015783.1_g000001 Rmu_sc0016387.1_g000009 Rmu_sc0017518.1_g000005 Rmu_sc0018480.1_g000001 Rmu_sc0018537.1_g000003 Rmu_sc0019200.1_g000002 Rmu_sc0019544.1_g000014 Rmu_sc0019544.1_g000015 Rmu_sc0019873.1_g000001 Rmu_sc0020392.1_g000001 Rmu_sc0020466.1_g000001 Rmu_sc0022008.1_g000001 Rmu_sc0022008.1_g000002 Rmu_sc0022274.1_g000001 Rmu_sc0023644.1_g000005 Rmu_sc0024657.1_g000001 Rmu_sc0024721.1_g000003 Rmu_sc0025790.1_g000001 Rmu_sc0026866.1_g000001 Rmu_sc0027363.1_g000002 Rmu_sc0027485.1_g000001 Rmu_sc0028394.1_g000001 Rmu_sc0033121.1_g000002 Rmu_sc0033838.1_g000001 Rmu_sc0035536.1_g000001 Rmu_sc0036296.1_g000001 Rmu_sc0036297.1_g000001 Rmu_sc0036298.1_g000001 Rmu_sc0036797.1_g000001 Rmu_sc0037010.1_g000001 Rmu_sc0037444.1_g000002 Rmu_sc0039012.1_g000002 Rmu_sc0040172.1_g000001 Rmu_sc0042083.1_g000001 Rmu_ssc0000018.1_g000001 Rmu_ssc0000171.1_g000032 Rmu_ssc0000213.1_g000064 Rmu_ssc0000213.1_g000096 Rmu_ssc0000262.1_g000017 Rmu_ssc0000295.1_g000036 Rmu_ssc0000343.1_g000008 Rmu_ssc0000398.1_g000003 Rmu_ssc0000400.1_g000085 Rmu_ssc0000438.1_g000007 Rmu_ssc0000478.1_g000003
rosa_roxburghii Rroxscaffold_166G00440710 Rroxscaffold_166G00440720 Rroxscaffold_174G00435300 Rroxscaffold_174G00435310 Rroxscaffold_177G00434290 Rroxscaffold_177G00434300 Rroxscaffold_177G00434310 Rroxscaffold_178G00437310 Rroxscaffold_1G00002500 Rroxscaffold_1G00004730 Rroxscaffold_1G00008660 Rroxscaffold_1G00008670 Rroxscaffold_1G00008680 Rroxscaffold_1G00008690 Rroxscaffold_1G00010260 Rroxscaffold_1G00015670 Rroxscaffold_1G00021140 Rroxscaffold_1G00024380 Rroxscaffold_1G00032420 Rroxscaffold_1G00050600 Rroxscaffold_1G00050610 Rroxscaffold_1G00055970 Rroxscaffold_1G00066220 Rroxscaffold_2G00085370 Rroxscaffold_2G00092350 Rroxscaffold_2G00092360 Rroxscaffold_2G00093350 Rroxscaffold_2G00097090 Rroxscaffold_2G00108040 Rroxscaffold_2G00109970 Rroxscaffold_2G00111470 Rroxscaffold_2G00111480 Rroxscaffold_2G00112000 Rroxscaffold_2G00112060 Rroxscaffold_2G00129160 Rroxscaffold_2G00132340 Rroxscaffold_2G00136720 Rroxscaffold_2G00152910 Rroxscaffold_3G00223160 Rroxscaffold_3G00223170 Rroxscaffold_3G00223520 Rroxscaffold_3G00230980 Rroxscaffold_3G00245030 Rroxscaffold_3G00259050 Rroxscaffold_3G00259060 Rroxscaffold_3G00259070 Rroxscaffold_3G00267470 Rroxscaffold_3G00272040 Rroxscaffold_3G00272440 Rroxscaffold_3G00272450 Rroxscaffold_4G00285860 Rroxscaffold_4G00285870 Rroxscaffold_4G00294380 Rroxscaffold_4G00294390 Rroxscaffold_4G00297890 Rroxscaffold_4G00298150 Rroxscaffold_4G00303090 Rroxscaffold_4G00306480 Rroxscaffold_4G00306680 Rroxscaffold_4G00310490 Rroxscaffold_4G00310630 Rroxscaffold_4G00310670 Rroxscaffold_4G00310680 Rroxscaffold_4G00310690 Rroxscaffold_4G00317930 Rroxscaffold_4G00320190 Rroxscaffold_4G00323370 Rroxscaffold_4G00323380 Rroxscaffold_4G00324200 Rroxscaffold_4G00331220 Rroxscaffold_5G00339230 Rroxscaffold_5G00341260 Rroxscaffold_5G00343120 Rroxscaffold_5G00345440 Rroxscaffold_5G00345450 Rroxscaffold_5G00353190 Rroxscaffold_5G00353420 Rroxscaffold_5G00356560 Rroxscaffold_5G00359790 Rroxscaffold_5G00381710 Rroxscaffold_5G00381720 Rroxscaffold_5G00386250 Rroxscaffold_5G00387520 Rroxscaffold_6G00390180 Rroxscaffold_6G00392810 Rroxscaffold_6G00401230 Rroxscaffold_6G00402640 Rroxscaffold_6G00405640 Rroxscaffold_6G00405650 Rroxscaffold_6G00405850 Rroxscaffold_6G00405860 Rroxscaffold_6G00412020 Rroxscaffold_6G00415690 Rroxscaffold_6G00415700 Rroxscaffold_7G00168110 Rroxscaffold_7G00178950 Rroxscaffold_7G00178960 Rroxscaffold_7G00193670 Rroxscaffold_7G00203020 Rroxscaffold_7G00203340 Rroxscaffold_7G00203550 Rroxscaffold_7G00207220 Rroxscaffold_7G00207250 Rroxscaffold_7G00207430 Rroxscaffold_7G00209310 Rroxscaffold_7G00211530 Rroxscaffold_7G00211540 Rroxscaffold_7G00214160 Rroxscaffold_7G00216040 Rroxscaffold_7G00216800
rosa_samantha Rh1AG276800 Rh1CG260400 Rh3CG366700
rosa_wichuraiana Rw1G001440 Rw3G029210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 367
AccBSI CCGCTC 1 cut(s) 1454
AccI GTMKAC 3 cut(s) 67, 225, 1254
AccII CGCG 5 cut(s) 495, 497, 802, 1157, 1460
AclWI GGATC 4 cut(s) 977, 1166, 1289, 1473
AcoI YGGCCR 1 cut(s) 1455
AcsI RAATTY 2 cut(s) 1078, 1101
AcuI CTGAAG 2 cut(s) 537, 624
AfaI GTAC 2 cut(s) 946, 1509
AfeI AGCGCT 1 cut(s) 1248
AfiI CCNNNNNNNGG 2 cut(s) 1277, 1347
AflIII ACRYGT 1 cut(s) 564
AgsI TTSAA 6 cut(s) 81, 182, 239, 305, 1090, 1441
AjnI CCWGG 2 cut(s) 914, 1017
AjuI GAANNNNNNNTTGG 2 cut(s) 1136, 1168
AleI CACNNNNGTG 1 cut(s) 668
AluBI AGCT 8 cut(s) 41, 199, 742, 870, 963, 1123, 1229, 1447
AluI AGCT 8 cut(s) 41, 199, 742, 870, 963, 1123, 1229, 1447
Alw21I GWGCWC 1 cut(s) 285
Alw26I GTCTC 1 cut(s) 380
AlwI GGATC 4 cut(s) 977, 1166, 1289, 1473
Aor51HI AGCGCT 1 cut(s) 1248
AoxI GGCC 3 cut(s) 630, 1134, 1455
ApeKI GCWGC 6 cut(s) 817, 825, 867, 953, 1211, 1244
ApoI RAATTY 2 cut(s) 1078, 1101
AspLEI GCGC 4 cut(s) 368, 497, 1249, 1537
AspS9I GGNCC 2 cut(s) 608, 1015
AsuC2I CCSGG 1 cut(s) 612
AsuHPI GGTGA 5 cut(s) 106, 549, 652, 1132, 1401
AvaII GGWCC 2 cut(s) 608, 1015
Bbv12I GWGCWC 1 cut(s) 285
BbvI GCAGC 6 cut(s) 829, 837, 879, 965, 1198, 1256
BccI CCATC 6 cut(s) 835, 1002, 1016, 1213, 1423, 1556
BcgI CGANNNNNNTGC 2 cut(s) 262, 296
BciT130I CCWGG 2 cut(s) 916, 1019
BclI TGATCA 1 cut(s) 96
BcnI CCSGG 1 cut(s) 612
BcoDI GTCTC 1 cut(s) 380
BfaI CTAG 5 cut(s) 420, 1196, 1250, 1259, 1380
BfmI CTRYAG 2 cut(s) 267, 666
BfoI RGCGCY 2 cut(s) 1250, 1538
Bme1390I CCNGG 3 cut(s) 612, 916, 1019
Bme18I GGWCC 2 cut(s) 608, 1015
BmgT120I GGNCC 2 cut(s) 608, 1015
BmiI GGNNCC 2 cut(s) 798, 1113
BmrFI CCNGG 3 cut(s) 612, 916, 1019
BmrI ACTGGG 1 cut(s) 1287
BmsI GCATC 3 cut(s) 886, 886, 920
BmuI ACTGGG 1 cut(s) 1287
BoxI GACNNNNGTC 2 cut(s) 51, 209
BplI GAGNNNNNCTC 4 cut(s) 25, 57, 183, 215
BpmI CTGGAG 1 cut(s) 457
Bpu10I CCTNAGC 1 cut(s) 959
BpuEI CTTGAG 2 cut(s) 77, 235
BpuMI CCSGG 1 cut(s) 612
BsaAI YACGTR 1 cut(s) 928
BsaJI CCNNGG 4 cut(s) 347, 915, 1107, 1458
BsaWI WCCGGW 1 cut(s) 1067
BsaXI ACNNNNNCTCC 2 cut(s) 10, 40
Bsc4I CCNNNNNNNGG 2 cut(s) 1277, 1347
Bse118I RCCGGY 1 cut(s) 970
Bse1I ACTGG 2 cut(s) 474, 1282
Bse3DI GCAATG 2 cut(s) 1009, 1358
BseBI CCWGG 2 cut(s) 916, 1019
BseDI CCNNGG 4 cut(s) 347, 915, 1107, 1458
BseGI GGATG 4 cut(s) 911, 1027, 1415, 1524
BseLI CCNNNNNNNGG 2 cut(s) 1277, 1347
BseMI GCAATG 2 cut(s) 1009, 1358
BseMII CTCAG 5 cut(s) 117, 750, 898, 950, 1140
BseNI ACTGG 2 cut(s) 474, 1282
BseRI GAGGAG 3 cut(s) 277, 872, 1052
BseX3I CGGCCG 1 cut(s) 1455
BseXI GCAGC 6 cut(s) 829, 837, 879, 965, 1198, 1256
BseYI CCCAGC 1 cut(s) 931
BsgI GTGCAG 1 cut(s) 325
Bsh1236I CGCG 5 cut(s) 495, 497, 802, 1157, 1460
Bsh1285I CGRYCG 2 cut(s) 597, 1458
BshFI GGCC 3 cut(s) 632, 1136, 1457
BsiEI CGRYCG 2 cut(s) 597, 1458
BsiHKAI GWGCWC 1 cut(s) 285
BsiSI CCGG 3 cut(s) 611, 971, 1068
BslFI GGGAC 2 cut(s) 338, 535
BslI CCNNNNNNNGG 2 cut(s) 1277, 1347
BsmAI GTCTC 1 cut(s) 380
BsmFI GGGAC 2 cut(s) 338, 535
BsmI GAATGC 1 cut(s) 913
BsnI GGCC 3 cut(s) 632, 1136, 1457
Bsp1286I GDGCHC 1 cut(s) 285
Bsp143I GATC 8 cut(s) 96, 982, 1171, 1206, 1281, 1294, 1465, 1485
Bsp68I TCGCGA 1 cut(s) 1157
BspANI GGCC 3 cut(s) 632, 1136, 1457
BspCNI CTCAG 5 cut(s) 116, 751, 897, 951, 1141
BspFNI CGCG 5 cut(s) 495, 497, 802, 1157, 1460
BspLI GGNNCC 2 cut(s) 798, 1113
BspPI GGATC 4 cut(s) 977, 1166, 1289, 1473
BsrBI CCGCTC 1 cut(s) 1454
BsrDI GCAATG 2 cut(s) 1009, 1358
BsrFI RCCGGY 1 cut(s) 970
BsrI ACTGG 2 cut(s) 474, 1282
BssAI RCCGGY 1 cut(s) 970
BssECI CCNNGG 4 cut(s) 347, 915, 1107, 1458
BssMI GATC 8 cut(s) 96, 982, 1171, 1206, 1281, 1294, 1465, 1485
BssT1I CCWWGG 2 cut(s) 347, 1107
Bst2UI CCWGG 2 cut(s) 916, 1019
Bst4CI ACNGT 5 cut(s) 391, 503, 598, 658, 949
Bst6I CTCTTC 4 cut(s) 114, 576, 1002, 1029
BstBAI YACGTR 1 cut(s) 928
BstC8I GCNNGC 7 cut(s) 356, 360, 364, 634, 638, 972, 1539
BstDEI CTNAG 6 cut(s) 103, 759, 884, 959, 1149, 1448
BstDSI CCRYGG 1 cut(s) 1458
BstF5I GGATG 4 cut(s) 911, 1027, 1415, 1524
BstFNI CGCG 5 cut(s) 495, 497, 802, 1157, 1460
BstH2I RGCGCY 2 cut(s) 1250, 1538
BstHHI GCGC 4 cut(s) 368, 497, 1249, 1537
BstKTI GATC 8 cut(s) 99, 985, 1174, 1209, 1284, 1297, 1468, 1488
BstMAI GTCTC 1 cut(s) 380
BstMBI GATC 8 cut(s) 96, 982, 1171, 1206, 1281, 1294, 1465, 1485
BstMCI CGRYCG 2 cut(s) 597, 1458
BstMWI GCNNNNNNNGC 1 cut(s) 1541
BstNI CCWGG 2 cut(s) 916, 1019
BstNSI RCATGY 1 cut(s) 568
BstPAI GACNNNNGTC 2 cut(s) 51, 209
BstSCI CCNGG 3 cut(s) 610, 914, 1017
BstSFI CTRYAG 2 cut(s) 267, 666
BstUI CGCG 5 cut(s) 495, 497, 802, 1157, 1460
BstV1I GCAGC 6 cut(s) 829, 837, 879, 965, 1198, 1256
BstXI CCANNNNNNTGG 2 cut(s) 354, 670
BstZI CGGCCG 1 cut(s) 1455
BsuRI GGCC 3 cut(s) 632, 1136, 1457
BtgI CCRYGG 1 cut(s) 1458
BtsCI GGATG 4 cut(s) 911, 1027, 1415, 1524
BtuMI TCGCGA 1 cut(s) 1157
Cac8I GCNNGC 7 cut(s) 356, 360, 364, 634, 638, 972, 1539
CciNI GCGGCCGC 1 cut(s) 1455
CfoI GCGC 4 cut(s) 368, 497, 1249, 1537
Cfr10I RCCGGY 1 cut(s) 970
Cfr13I GGNCC 2 cut(s) 608, 1015
Cfr42I CCGCGG 1 cut(s) 1461
CseI GACGC 1 cut(s) 791
Csp6I GTAC 2 cut(s) 945, 1508
CspCI CAANNNNNGTGG 2 cut(s) 283, 318
CviAII CATG 9 cut(s) 6, 49, 207, 565, 821, 829, 1187, 1237, 1475
CviQI GTAC 2 cut(s) 945, 1508
DdeI CTNAG 6 cut(s) 103, 759, 884, 959, 1149, 1448
DpnI GATC 8 cut(s) 98, 984, 1173, 1208, 1283, 1296, 1467, 1487
DpnII GATC 8 cut(s) 96, 982, 1171, 1206, 1281, 1294, 1465, 1485
EaeI YGGCCR 1 cut(s) 1455
EagI CGGCCG 1 cut(s) 1455
Eam1104I CTCTTC 4 cut(s) 114, 576, 1002, 1029
EarI CTCTTC 4 cut(s) 114, 576, 1002, 1029
EclXI CGGCCG 1 cut(s) 1455
Eco130I CCWWGG 2 cut(s) 347, 1107
Eco47I GGWCC 2 cut(s) 608, 1015
Eco47III AGCGCT 1 cut(s) 1248
Eco52I CGGCCG 1 cut(s) 1455
Eco57I CTGAAG 2 cut(s) 537, 624
EcoRII CCWGG 2 cut(s) 914, 1017
EcoT14I CCWWGG 2 cut(s) 347, 1107
EcoT22I ATGCAT 1 cut(s) 913
ErhI CCWWGG 2 cut(s) 347, 1107
FaeI CATG 9 cut(s) 9, 52, 210, 568, 824, 832, 1190, 1240, 1478
FalI AAGNNNNNCTT 2 cut(s) 676, 708
FaqI GGGAC 2 cut(s) 338, 535
FatI CATG 9 cut(s) 5, 48, 206, 564, 820, 828, 1186, 1236, 1474
FauNDI CATATG 1 cut(s) 1168
FbaI TGATCA 1 cut(s) 96
FblI GTMKAC 3 cut(s) 67, 225, 1254
FokI GGATG 4 cut(s) 898, 1034, 1402, 1511
FspBI CTAG 5 cut(s) 420, 1196, 1250, 1259, 1380
FspI TGCGCA 1 cut(s) 367
GlaI GCGC 4 cut(s) 367, 496, 1248, 1536
GsaI CCCAGC 1 cut(s) 935
GsuI CTGGAG 1 cut(s) 457
HaeII RGCGCY 2 cut(s) 1250, 1538
HaeIII GGCC 3 cut(s) 632, 1136, 1457
HapII CCGG 3 cut(s) 611, 971, 1068
HgaI GACGC 1 cut(s) 791
HhaI GCGC 4 cut(s) 368, 497, 1249, 1537
Hin1II CATG 9 cut(s) 9, 52, 210, 568, 824, 832, 1190, 1240, 1478
Hin6I GCGC 4 cut(s) 366, 495, 1247, 1535
HinP1I GCGC 4 cut(s) 366, 495, 1247, 1535
HincII GTYRAC 3 cut(s) 570, 806, 1065
HindII GTYRAC 3 cut(s) 570, 806, 1065
HindIII AAGCTT 1 cut(s) 1227
HpaI GTTAAC 1 cut(s) 1065
HpaII CCGG 3 cut(s) 611, 971, 1068
HphI GGTGA 5 cut(s) 106, 549, 652, 1132, 1401
Hpy166II GTNNAC 8 cut(s) 68, 226, 294, 445, 570, 806, 1065, 1255
Hpy188I TCNGA 6 cut(s) 106, 517, 702, 730, 887, 1470
Hpy8I GTNNAC 8 cut(s) 68, 226, 294, 445, 570, 806, 1065, 1255
Hpy99I CGWCG 2 cut(s) 338, 1031
HpyAV CCTTC 5 cut(s) 599, 710, 1147, 1386, 1550
HpyCH4III ACNGT 5 cut(s) 391, 503, 598, 658, 949
HpyCH4IV ACGT 2 cut(s) 747, 927
HpyCH4V TGCA 4 cut(s) 342, 396, 899, 911
HpyF10VI GCNNNNNNNGC 1 cut(s) 1541
HpyF3I CTNAG 6 cut(s) 103, 759, 884, 959, 1149, 1448
HpySE526I ACGT 2 cut(s) 747, 927
Hsp92II CATG 9 cut(s) 9, 52, 210, 568, 824, 832, 1190, 1240, 1478
HspAI GCGC 4 cut(s) 366, 495, 1247, 1535
KroI GCCGGC 1 cut(s) 970
KroNI GCCGGC 1 cut(s) 972
Ksp22I TGATCA 1 cut(s) 96
KspAI GTTAAC 1 cut(s) 1065
KspI CCGCGG 1 cut(s) 1461
Kzo9I GATC 8 cut(s) 96, 982, 1171, 1206, 1281, 1294, 1465, 1485
LmnI GCTCC 1 cut(s) 719
Lsp1109I GCAGC 6 cut(s) 829, 837, 879, 965, 1198, 1256
LweI GCATC 3 cut(s) 886, 886, 920
MaeI CTAG 5 cut(s) 420, 1196, 1250, 1259, 1380
MaeII ACGT 2 cut(s) 747, 927
MaeIII GTNAC 5 cut(s) 476, 526, 598, 658, 1407
MalI GATC 8 cut(s) 98, 984, 1173, 1208, 1283, 1296, 1467, 1487
MbiI CCGCTC 1 cut(s) 1454
MboI GATC 8 cut(s) 96, 982, 1171, 1206, 1281, 1294, 1465, 1485
MhlI GDGCHC 1 cut(s) 285
MluCI AATT 4 cut(s) 182, 1078, 1101, 1432
MlyI GAGTC 6 cut(s) 73, 231, 320, 523, 1415, 1421
Mph1103I ATGCAT 1 cut(s) 913
MroNI GCCGGC 1 cut(s) 970
MseI TTAA 3 cut(s) 618, 1064, 1119
MslI CAYNNNNRTG 2 cut(s) 668, 1002
MspA1I CMGCKG 1 cut(s) 1460
MspI CCGG 3 cut(s) 611, 971, 1068
MspR9I CCNGG 3 cut(s) 612, 916, 1019
Mva1269I GAATGC 1 cut(s) 913
MvaI CCWGG 2 cut(s) 916, 1019
MvnI CGCG 5 cut(s) 495, 497, 802, 1157, 1460
MwoI GCNNNNNNNGC 1 cut(s) 1541
NaeI GCCGGC 1 cut(s) 972
NciI CCSGG 1 cut(s) 612
NdeI CATATG 1 cut(s) 1168
NdeII GATC 8 cut(s) 96, 982, 1171, 1206, 1281, 1294, 1465, 1485
NgoMIV GCCGGC 1 cut(s) 970
NlaIII CATG 9 cut(s) 9, 52, 210, 568, 824, 832, 1190, 1240, 1478
NlaIV GGNNCC 2 cut(s) 798, 1113
NmuCI GTSAC 3 cut(s) 526, 658, 1407
NotI GCGGCCGC 1 cut(s) 1455
NruI TCGCGA 1 cut(s) 1157
NsbI TGCGCA 1 cut(s) 367
NsiI ATGCAT 1 cut(s) 913
NspI RCATGY 1 cut(s) 568
OliI CACNNNNGTG 1 cut(s) 668
PciI ACATGT 1 cut(s) 564
PcsI WCGNNNNNNNCGW 1 cut(s) 1056
PctI GAATGC 1 cut(s) 913
PdiI GCCGGC 1 cut(s) 972
PfeI GAWTC 4 cut(s) 128, 537, 832, 1192
PfoI TCCNGGA 1 cut(s) 1017
PleI GAGTC 6 cut(s) 72, 230, 320, 523, 1414, 1421
PpsI GAGTC 6 cut(s) 72, 230, 320, 523, 1414, 1421
Ppu21I YACGTR 1 cut(s) 928
PscI ACATGT 1 cut(s) 564
PshAI GACNNNNGTC 2 cut(s) 51, 209
Psp6I CCWGG 2 cut(s) 914, 1017
PspFI CCCAGC 1 cut(s) 931
PspGI CCWGG 2 cut(s) 914, 1017
PspN4I GGNNCC 2 cut(s) 798, 1113
PspPI GGNCC 2 cut(s) 608, 1015
RruI TCGCGA 1 cut(s) 1157
RsaI GTAC 2 cut(s) 946, 1509
RsaNI GTAC 2 cut(s) 945, 1508
RseI CAYNNNNRTG 2 cut(s) 668, 1002
SacII CCGCGG 1 cut(s) 1461
SaqAI TTAA 3 cut(s) 618, 1064, 1119
Sau3AI GATC 8 cut(s) 96, 982, 1171, 1206, 1281, 1294, 1465, 1485
Sau96I GGNCC 2 cut(s) 608, 1015
SchI GAGTC 6 cut(s) 73, 231, 320, 523, 1415, 1421
ScrFI CCNGG 3 cut(s) 612, 916, 1019
SduI GDGCHC 1 cut(s) 285
SfaNI GCATC 3 cut(s) 886, 886, 920
SfcI CTRYAG 2 cut(s) 267, 666
Sfr303I CCGCGG 1 cut(s) 1461
SgrBI CCGCGG 1 cut(s) 1461
SinI GGWCC 2 cut(s) 608, 1015
SmiMI CAYNNNNRTG 2 cut(s) 668, 1002
SmlI CTYRAG 2 cut(s) 56, 214
SmoI CTYRAG 2 cut(s) 56, 214
Sse9I AATT 4 cut(s) 182, 1078, 1101, 1432
SspMI CTAG 5 cut(s) 420, 1196, 1250, 1259, 1380
StyD4I CCNGG 3 cut(s) 610, 914, 1017
StyI CCWWGG 2 cut(s) 347, 1107
TaaI ACNGT 5 cut(s) 391, 503, 598, 658, 949
TaiI ACGT 2 cut(s) 750, 930
TaqI TCGA 5 cut(s) 126, 839, 873, 1293, 1308
TaqII GACCGA 1 cut(s) 1222
TasI AATT 4 cut(s) 182, 1078, 1101, 1432
TatI WGTACW 1 cut(s) 1507
TauI GCSGC 5 cut(s) 1055, 1244, 1457, 1460, 1544
TfiI GAWTC 4 cut(s) 128, 537, 832, 1192
Tru1I TTAA 3 cut(s) 618, 1064, 1119
Tru9I TTAA 3 cut(s) 618, 1064, 1119
TseFI GTSAC 3 cut(s) 526, 658, 1407
TseI GCWGC 6 cut(s) 817, 825, 867, 953, 1211, 1244
Tsp45I GTSAC 3 cut(s) 526, 658, 1407
TspDTI ATGAA 3 cut(s) 1020, 1047, 1491
VpaK11BI GGWCC 2 cut(s) 608, 1015
XapI RAATTY 2 cut(s) 1078, 1101
XbaI TCTAGA 1 cut(s) 1195
XceI RCATGY 1 cut(s) 568
XmiI GTMKAC 3 cut(s) 67, 225, 1254
XspI CTAG 5 cut(s) 420, 1196, 1250, 1259, 1380
Zsp2I ATGCAT 1 cut(s) 913
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.