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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 2 cut(s) | 270, 358 |
| AccII | CGCG | 2 cut(s) | 153, 316 |
| AciI | CCGC | 7 cut(s) | 112, 270, 278, 314, 358, 381, 405 |
| AclWI | GGATC | 1 cut(s) | 77 |
| AcoI | YGGCCR | 2 cut(s) | 109, 275 |
| AfaI | GTAC | 1 cut(s) | 134 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 55 |
| AgsI | TTSAA | 2 cut(s) | 46, 211 |
| AlwI | GGATC | 1 cut(s) | 77 |
| AoxI | GGCC | 5 cut(s) | 5, 109, 159, 225, 275 |
| ApeKI | GCWGC | 2 cut(s) | 194, 197 |
| AspLEI | GCGC | 2 cut(s) | 153, 399 |
| AspS9I | GGNCC | 1 cut(s) | 5 |
| AsuC2I | CCSGG | 1 cut(s) | 240 |
| AsuHPI | GGTGA | 1 cut(s) | 361 |
| BbvI | GCAGC | 2 cut(s) | 181, 184 |
| BccI | CCATC | 1 cut(s) | 124 |
| BceAI | ACGGC | 1 cut(s) | 290 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 71, 105 |
| BcnI | CCSGG | 1 cut(s) | 240 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 13 |
| BisI | GCNGC | 5 cut(s) | 112, 195, 198, 278, 314 |
| BlsI | GCNGC | 5 cut(s) | 113, 196, 199, 279, 315 |
| Bme1390I | CCNGG | 1 cut(s) | 240 |
| BmgT120I | GGNCC | 1 cut(s) | 5 |
| BmiI | GGNNCC | 2 cut(s) | 6, 312 |
| BmrFI | CCNGG | 1 cut(s) | 240 |
| BpuMI | CCSGG | 1 cut(s) | 240 |
| BsaAI | YACGTR | 1 cut(s) | 136 |
| BsaJI | CCNNGG | 2 cut(s) | 97, 228 |
| BsaWI | WCCGGW | 1 cut(s) | 119 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 399, 429 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 55 |
| Bse118I | RCCGGY | 1 cut(s) | 409 |
| BseDI | CCNNGG | 2 cut(s) | 97, 228 |
| BseGI | GGATG | 1 cut(s) | 116 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 55 |
| BseX3I | CGGCCG | 1 cut(s) | 275 |
| BseXI | GCAGC | 2 cut(s) | 181, 184 |
| Bsh1236I | CGCG | 2 cut(s) | 153, 316 |
| Bsh1285I | CGRYCG | 2 cut(s) | 278, 405 |
| BshFI | GGCC | 5 cut(s) | 7, 111, 161, 227, 277 |
| BsiEI | CGRYCG | 2 cut(s) | 278, 405 |
| BsiSI | CCGG | 3 cut(s) | 120, 240, 410 |
| BslFI | GGGAC | 1 cut(s) | 321 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 55 |
| BsmFI | GGGAC | 1 cut(s) | 321 |
| BsnI | GGCC | 5 cut(s) | 7, 111, 161, 227, 277 |
| Bsp143I | GATC | 4 cut(s) | 82, 189, 255, 419 |
| BspACI | CCGC | 7 cut(s) | 112, 270, 278, 314, 358, 381, 405 |
| BspANI | GGCC | 5 cut(s) | 7, 111, 161, 227, 277 |
| BspFNI | CGCG | 2 cut(s) | 153, 316 |
| BspLI | GGNNCC | 2 cut(s) | 6, 312 |
| BspPI | GGATC | 1 cut(s) | 77 |
| BsrBI | CCGCTC | 2 cut(s) | 270, 358 |
| BsrFI | RCCGGY | 1 cut(s) | 409 |
| BssAI | RCCGGY | 1 cut(s) | 409 |
| BssECI | CCNNGG | 2 cut(s) | 97, 228 |
| BssMI | GATC | 4 cut(s) | 82, 189, 255, 419 |
| BssT1I | CCWWGG | 2 cut(s) | 97, 228 |
| Bst4CI | ACNGT | 1 cut(s) | 349 |
| BstBAI | YACGTR | 1 cut(s) | 136 |
| BstC8I | GCNNGC | 1 cut(s) | 225 |
| BstF5I | GGATG | 1 cut(s) | 116 |
| BstFNI | CGCG | 2 cut(s) | 153, 316 |
| BstHHI | GCGC | 2 cut(s) | 153, 399 |
| BstKTI | GATC | 4 cut(s) | 85, 192, 258, 422 |
| BstMBI | GATC | 4 cut(s) | 82, 189, 255, 419 |
| BstMCI | CGRYCG | 2 cut(s) | 278, 405 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 13, 108 |
| BstSCI | CCNGG | 1 cut(s) | 238 |
| BstUI | CGCG | 2 cut(s) | 153, 316 |
| BstV1I | GCAGC | 2 cut(s) | 181, 184 |
| BstZI | CGGCCG | 1 cut(s) | 275 |
| BsuRI | GGCC | 5 cut(s) | 7, 111, 161, 227, 277 |
| BtsCI | GGATG | 1 cut(s) | 116 |
| Cac8I | GCNNGC | 1 cut(s) | 225 |
| CfoI | GCGC | 2 cut(s) | 153, 399 |
| Cfr10I | RCCGGY | 1 cut(s) | 409 |
| Cfr13I | GGNCC | 1 cut(s) | 5 |
| CseI | GACGC | 1 cut(s) | 305 |
| Csp6I | GTAC | 1 cut(s) | 133 |
| CviAII | CATG | 1 cut(s) | 50 |
| CviQI | GTAC | 1 cut(s) | 133 |
| DpnI | GATC | 4 cut(s) | 84, 191, 257, 421 |
| DpnII | GATC | 4 cut(s) | 82, 189, 255, 419 |
| EaeI | YGGCCR | 2 cut(s) | 109, 275 |
| EagI | CGGCCG | 1 cut(s) | 275 |
| EclXI | CGGCCG | 1 cut(s) | 275 |
| Eco130I | CCWWGG | 2 cut(s) | 97, 228 |
| Eco147I | AGGCCT | 1 cut(s) | 227 |
| Eco52I | CGGCCG | 1 cut(s) | 275 |
| EcoT14I | CCWWGG | 2 cut(s) | 97, 228 |
| ErhI | CCWWGG | 2 cut(s) | 97, 228 |
| FaeI | CATG | 1 cut(s) | 53 |
| FaiI | YATR | 6 cut(s) | 30, 51, 327, 344, 369, 395 |
| FaqI | GGGAC | 1 cut(s) | 321 |
| FatI | CATG | 1 cut(s) | 49 |
| FauI | CCCGC | 1 cut(s) | 374 |
| Fnu4HI | GCNGC | 5 cut(s) | 112, 195, 198, 278, 314 |
| FokI | GGATG | 1 cut(s) | 103 |
| Fsp4HI | GCNGC | 5 cut(s) | 112, 195, 198, 278, 314 |
| GlaI | GCGC | 2 cut(s) | 152, 398 |
| GluI | GCNGC | 5 cut(s) | 112, 195, 198, 278, 314 |
| HaeIII | GGCC | 5 cut(s) | 7, 111, 161, 227, 277 |
| HapII | CCGG | 3 cut(s) | 120, 240, 410 |
| HgaI | GACGC | 1 cut(s) | 305 |
| HhaI | GCGC | 2 cut(s) | 153, 399 |
| Hin1II | CATG | 1 cut(s) | 53 |
| Hin6I | GCGC | 2 cut(s) | 151, 397 |
| HinP1I | GCGC | 2 cut(s) | 151, 397 |
| HpaII | CCGG | 3 cut(s) | 120, 240, 410 |
| HphI | GGTGA | 1 cut(s) | 361 |
| Hpy188I | TCNGA | 1 cut(s) | 419 |
| Hpy188III | TCNNGA | 3 cut(s) | 338, 373, 423 |
| Hpy99I | CGWCG | 1 cut(s) | 321 |
| HpyAV | CCTTC | 3 cut(s) | 49, 241, 294 |
| HpyCH4III | ACNGT | 1 cut(s) | 349 |
| HpyCH4IV | ACGT | 1 cut(s) | 135 |
| HpyCH4V | TGCA | 1 cut(s) | 67 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 13, 108 |
| HpySE526I | ACGT | 1 cut(s) | 135 |
| Hsp92II | CATG | 1 cut(s) | 53 |
| HspAI | GCGC | 2 cut(s) | 151, 397 |
| Kzo9I | GATC | 4 cut(s) | 82, 189, 255, 419 |
| LmnI | GCTCC | 3 cut(s) | 220, 310, 355 |
| LpnPI | CCDG | 4 cut(s) | 133, 209, 253, 423 |
| Lsp1109I | GCAGC | 2 cut(s) | 181, 184 |
| MaeII | ACGT | 1 cut(s) | 135 |
| MaeIII | GTNAC | 1 cut(s) | 349 |
| MalI | GATC | 4 cut(s) | 84, 191, 257, 421 |
| MbiI | CCGCTC | 2 cut(s) | 270, 358 |
| MboI | GATC | 4 cut(s) | 82, 189, 255, 419 |
| MboII | GAAGA | 3 cut(s) | 171, 174, 223 |
| MluCI | AATT | 2 cut(s) | 41, 376 |
| MnlI | CCTC | 1 cut(s) | 306 |
| MspI | CCGG | 3 cut(s) | 120, 240, 410 |
| MspR9I | CCNGG | 1 cut(s) | 240 |
| MvnI | CGCG | 2 cut(s) | 153, 316 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 13, 108 |
| NciI | CCSGG | 1 cut(s) | 240 |
| NdeII | GATC | 4 cut(s) | 82, 189, 255, 419 |
| NlaIII | CATG | 1 cut(s) | 53 |
| NlaIV | GGNNCC | 2 cut(s) | 6, 312 |
| NmeAIII | GCCGAG | 1 cut(s) | 306 |
| NmuCI | GTSAC | 1 cut(s) | 349 |
| PceI | AGGCCT | 1 cut(s) | 227 |
| PkrI | GCNGC | 5 cut(s) | 113, 196, 199, 279, 315 |
| Ppu21I | YACGTR | 1 cut(s) | 136 |
| PspN4I | GGNNCC | 2 cut(s) | 6, 312 |
| PspPI | GGNCC | 1 cut(s) | 5 |
| RsaI | GTAC | 1 cut(s) | 134 |
| RsaNI | GTAC | 1 cut(s) | 133 |
| SatI | GCNGC | 5 cut(s) | 112, 195, 198, 278, 314 |
| Sau3AI | GATC | 4 cut(s) | 82, 189, 255, 419 |
| Sau96I | GGNCC | 1 cut(s) | 5 |
| ScrFI | CCNGG | 1 cut(s) | 240 |
| SetI | ASST | 1 cut(s) | 138 |
| Sse9I | AATT | 2 cut(s) | 41, 376 |
| SseBI | AGGCCT | 1 cut(s) | 227 |
| SsiI | CCGC | 7 cut(s) | 112, 270, 278, 314, 358, 381, 405 |
| StuI | AGGCCT | 1 cut(s) | 227 |
| StyD4I | CCNGG | 1 cut(s) | 238 |
| StyI | CCWWGG | 2 cut(s) | 97, 228 |
| TaaI | ACNGT | 1 cut(s) | 349 |
| TaiI | ACGT | 1 cut(s) | 138 |
| TaqI | TCGA | 5 cut(s) | 185, 266, 298, 319, 401 |
| TasI | AATT | 2 cut(s) | 41, 376 |
| TauI | GCSGC | 3 cut(s) | 114, 280, 316 |
| TseFI | GTSAC | 1 cut(s) | 349 |
| TseI | GCWGC | 2 cut(s) | 194, 197 |
| Tsp45I | GTSAC | 1 cut(s) | 349 |
| TspDTI | ATGAA | 1 cut(s) | 252 |
| TspGWI | ACGGA | 1 cut(s) | 368 |