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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 737 |
| AccI | GTMKAC | 1 cut(s) | 248 |
| AccII | CGCG | 4 cut(s) | 174, 176, 510, 852 |
| AciI | CCGC | 9 cut(s) | 164, 176, 276, 669, 683, 737, 905, 969, 1029 |
| AclWI | GGATC | 2 cut(s) | 776, 789 |
| AcoI | YGGCCR | 1 cut(s) | 808 |
| AfaI | GTAC | 1 cut(s) | 833 |
| AfeI | AGCGCT | 1 cut(s) | 35 |
| AgsI | TTSAA | 2 cut(s) | 40, 766 |
| AjnI | CCWGG | 1 cut(s) | 708 |
| AleI | CACNNNNGTG | 1 cut(s) | 347 |
| AluBI | AGCT | 4 cut(s) | 502, 523, 773, 887 |
| AluI | AGCT | 4 cut(s) | 502, 523, 773, 887 |
| Alw21I | GWGCWC | 1 cut(s) | 20 |
| AlwI | GGATC | 2 cut(s) | 776, 789 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 890 |
| Ama87I | CYCGRG | 1 cut(s) | 67 |
| Aor51HI | AGCGCT | 1 cut(s) | 35 |
| AoxI | GGCC | 3 cut(s) | 309, 808, 975 |
| ApeKI | GCWGC | 3 cut(s) | 553, 593, 896 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 455, 487 |
| AspLEI | GCGC | 3 cut(s) | 36, 176, 852 |
| AsuHPI | GGTGA | 3 cut(s) | 218, 228, 260 |
| AsuNHI | GCTAGC | 1 cut(s) | 605 |
| AvaI | CYCGRG | 1 cut(s) | 67 |
| BalI | TGGCCA | 1 cut(s) | 810 |
| BamHI | GGATCC | 1 cut(s) | 781 |
| BbsI | GAAGAC | 1 cut(s) | 680 |
| Bbv12I | GWGCWC | 1 cut(s) | 20 |
| BbvCI | CCTCAGC | 1 cut(s) | 883 |
| BbvI | GCAGC | 3 cut(s) | 565, 580, 883 |
| BccI | CCATC | 4 cut(s) | 454, 456, 692, 823 |
| BcgI | CGANNNNNNTGC | 1 cut(s) | 31 |
| BciT130I | CCWGG | 1 cut(s) | 710 |
| BfaI | CTAG | 4 cut(s) | 99, 515, 549, 606 |
| BfmI | CTRYAG | 1 cut(s) | 345 |
| BfoI | RGCGCY | 1 cut(s) | 37 |
| BglII | AGATCT | 1 cut(s) | 633 |
| BisI | GCNGC | 3 cut(s) | 554, 594, 897 |
| BlsI | GCNGC | 3 cut(s) | 555, 595, 898 |
| Bme1390I | CCNGG | 1 cut(s) | 710 |
| BmeT110I | CYCGRG | 1 cut(s) | 67 |
| BmiI | GGNNCC | 1 cut(s) | 783 |
| BmrFI | CCNGG | 1 cut(s) | 710 |
| BmsI | GCATC | 3 cut(s) | 175, 472, 1000 |
| BmtI | GCTAGC | 1 cut(s) | 609 |
| BpiI | GAAGAC | 1 cut(s) | 680 |
| BpmI | CTGGAG | 1 cut(s) | 136 |
| Bpu10I | CCTNAGC | 2 cut(s) | 381, 883 |
| BsaAI | YACGTR | 1 cut(s) | 835 |
| BsaBI | GATNNNNATC | 1 cut(s) | 264 |
| BsaJI | CCNNGG | 3 cut(s) | 68, 717, 796 |
| BsaWI | WCCGGW | 1 cut(s) | 818 |
| Bse1I | ACTGG | 3 cut(s) | 137, 153, 256 |
| Bse8I | GATNNNNATC | 1 cut(s) | 264 |
| BseBI | CCWGG | 1 cut(s) | 710 |
| BseDI | CCNNGG | 3 cut(s) | 68, 717, 796 |
| BseGI | GGATG | 3 cut(s) | 166, 703, 815 |
| BseJI | GATNNNNATC | 1 cut(s) | 264 |
| BseMII | CTCAG | 5 cut(s) | 186, 273, 399, 687, 897 |
| BseNI | ACTGG | 3 cut(s) | 137, 153, 256 |
| BseRI | GAGGAG | 1 cut(s) | 12 |
| BseXI | GCAGC | 3 cut(s) | 565, 580, 883 |
| BsgI | GTGCAG | 3 cut(s) | 60, 597, 1029 |
| Bsh1236I | CGCG | 4 cut(s) | 174, 176, 510, 852 |
| Bsh1285I | CGRYCG | 1 cut(s) | 276 |
| BshFI | GGCC | 3 cut(s) | 311, 810, 977 |
| BsiEI | CGRYCG | 1 cut(s) | 276 |
| BsiHKAI | GWGCWC | 1 cut(s) | 20 |
| BsiHKCI | CYCGRG | 1 cut(s) | 67 |
| BsiSI | CCGG | 1 cut(s) | 819 |
| BslFI | GGGAC | 1 cut(s) | 73 |
| BsmFI | GGGAC | 1 cut(s) | 73 |
| BsnI | GGCC | 3 cut(s) | 311, 810, 977 |
| BsoBI | CYCGRG | 1 cut(s) | 67 |
| Bsp1286I | GDGCHC | 1 cut(s) | 20 |
| Bsp143I | GATC | 4 cut(s) | 517, 558, 633, 781 |
| BspACI | CCGC | 9 cut(s) | 164, 176, 276, 669, 683, 737, 905, 969, 1029 |
| BspANI | GGCC | 3 cut(s) | 311, 810, 977 |
| BspCNI | CTCAG | 5 cut(s) | 187, 274, 400, 686, 896 |
| BspFNI | CGCG | 4 cut(s) | 174, 176, 510, 852 |
| BspLI | GGNNCC | 1 cut(s) | 783 |
| BspOI | GCTAGC | 1 cut(s) | 609 |
| BspPI | GGATC | 2 cut(s) | 776, 789 |
| BsrBI | CCGCTC | 1 cut(s) | 737 |
| BsrI | ACTGG | 3 cut(s) | 137, 153, 256 |
| BssECI | CCNNGG | 3 cut(s) | 68, 717, 796 |
| BssMI | GATC | 4 cut(s) | 517, 558, 633, 781 |
| BssT1I | CCWWGG | 1 cut(s) | 796 |
| Bst2UI | CCWGG | 1 cut(s) | 710 |
| Bst4CI | ACNGT | 4 cut(s) | 182, 337, 349, 892 |
| BstBAI | YACGTR | 1 cut(s) | 835 |
| BstC8I | GCNNGC | 7 cut(s) | 313, 317, 598, 607, 611, 812, 957 |
| BstDEI | CTNAG | 6 cut(s) | 195, 282, 381, 408, 673, 883 |
| BstF5I | GGATG | 3 cut(s) | 166, 703, 815 |
| BstFNI | CGCG | 4 cut(s) | 174, 176, 510, 852 |
| BstH2I | RGCGCY | 1 cut(s) | 37 |
| BstHHI | GCGC | 3 cut(s) | 36, 176, 852 |
| BstKTI | GATC | 4 cut(s) | 520, 561, 636, 784 |
| BstMBI | GATC | 4 cut(s) | 517, 558, 633, 781 |
| BstMCI | CGRYCG | 1 cut(s) | 276 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 83, 473, 482, 602, 606, 710, 807, 893 |
| BstNI | CCWGG | 1 cut(s) | 710 |
| BstNSI | RCATGY | 1 cut(s) | 593 |
| BstSCI | CCNGG | 1 cut(s) | 708 |
| BstSFI | CTRYAG | 1 cut(s) | 345 |
| BstUI | CGCG | 4 cut(s) | 174, 176, 510, 852 |
| BstV1I | GCAGC | 3 cut(s) | 565, 580, 883 |
| BstV2I | GAAGAC | 1 cut(s) | 680 |
| BstX2I | RGATCY | 2 cut(s) | 633, 781 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 89 |
| BstYI | RGATCY | 2 cut(s) | 633, 781 |
| BsuRI | GGCC | 3 cut(s) | 311, 810, 977 |
| BtgZI | GCGATG | 1 cut(s) | 434 |
| BtsCI | GGATG | 3 cut(s) | 166, 703, 815 |
| BtsI | GCAGTG | 1 cut(s) | 585 |
| BtsIMutI | CAGTG | 4 cut(s) | 304, 333, 354, 585 |
| Cac8I | GCNNGC | 7 cut(s) | 313, 317, 598, 607, 611, 812, 957 |
| CaiI | CAGNNNCTG | 1 cut(s) | 890 |
| CfoI | GCGC | 3 cut(s) | 36, 176, 852 |
| CseI | GACGC | 2 cut(s) | 473, 589 |
| Csp6I | GTAC | 1 cut(s) | 832 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 702, 737 |
| CviAII | CATG | 4 cut(s) | 244, 536, 590, 679 |
| CviQI | GTAC | 1 cut(s) | 832 |
| DdeI | CTNAG | 6 cut(s) | 195, 282, 381, 408, 673, 883 |
| DpnI | GATC | 4 cut(s) | 519, 560, 635, 783 |
| DpnII | GATC | 4 cut(s) | 517, 558, 633, 781 |
| DraI | TTTAAA | 1 cut(s) | 744 |
| EaeI | YGGCCR | 1 cut(s) | 808 |
| EciI | GGCGGA | 1 cut(s) | 984 |
| Eco130I | CCWWGG | 1 cut(s) | 796 |
| Eco47III | AGCGCT | 1 cut(s) | 35 |
| Eco88I | CYCGRG | 1 cut(s) | 67 |
| EcoRII | CCWGG | 1 cut(s) | 708 |
| EcoT14I | CCWWGG | 1 cut(s) | 796 |
| ErhI | CCWWGG | 1 cut(s) | 796 |
| FaeI | CATG | 4 cut(s) | 247, 539, 593, 682 |
| FaiI | YATR | 7 cut(s) | 144, 245, 506, 537, 591, 680, 728 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 355, 387 |
| FaqI | GGGAC | 1 cut(s) | 73 |
| FatI | CATG | 4 cut(s) | 243, 535, 589, 678 |
| FauI | CCCGC | 2 cut(s) | 676, 1036 |
| FblI | GTMKAC | 1 cut(s) | 248 |
| Fnu4HI | GCNGC | 3 cut(s) | 554, 594, 897 |
| FokI | GGATG | 3 cut(s) | 153, 710, 802 |
| Fsp4HI | GCNGC | 3 cut(s) | 554, 594, 897 |
| FspBI | CTAG | 4 cut(s) | 99, 515, 549, 606 |
| GlaI | GCGC | 3 cut(s) | 35, 175, 851 |
| GluI | GCNGC | 3 cut(s) | 554, 594, 897 |
| GsuI | CTGGAG | 1 cut(s) | 136 |
| HaeII | RGCGCY | 1 cut(s) | 37 |
| HaeIII | GGCC | 3 cut(s) | 311, 810, 977 |
| HapII | CCGG | 1 cut(s) | 819 |
| HgaI | GACGC | 2 cut(s) | 473, 589 |
| HhaI | GCGC | 3 cut(s) | 36, 176, 852 |
| Hin1II | CATG | 4 cut(s) | 247, 539, 593, 682 |
| Hin6I | GCGC | 3 cut(s) | 34, 174, 850 |
| HinP1I | GCGC | 3 cut(s) | 34, 174, 850 |
| HincII | GTYRAC | 3 cut(s) | 29, 249, 340 |
| HindII | GTYRAC | 3 cut(s) | 29, 249, 340 |
| HindIII | AAGCTT | 1 cut(s) | 771 |
| HinfI | GANTC | 4 cut(s) | 216, 265, 616, 652 |
| HpaI | GTTAAC | 1 cut(s) | 340 |
| HpaII | CCGG | 1 cut(s) | 819 |
| HphI | GGTGA | 3 cut(s) | 218, 228, 260 |
| Hpy166II | GTNNAC | 4 cut(s) | 29, 124, 249, 340 |
| Hpy188I | TCNGA | 6 cut(s) | 196, 291, 409, 571, 676, 1024 |
| Hpy188III | TCNNGA | 2 cut(s) | 392, 649 |
| Hpy8I | GTNNAC | 4 cut(s) | 29, 124, 249, 340 |
| Hpy99I | CGWCG | 1 cut(s) | 605 |
| HpyCH4III | ACNGT | 4 cut(s) | 182, 337, 349, 892 |
| HpyCH4IV | ACGT | 2 cut(s) | 834, 1034 |
| HpyCH4V | TGCA | 5 cut(s) | 77, 539, 578, 730, 1010 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 83, 473, 482, 602, 606, 710, 807, 893 |
| HpyF3I | CTNAG | 6 cut(s) | 195, 282, 381, 408, 673, 883 |
| HpySE526I | ACGT | 2 cut(s) | 834, 1034 |
| Hsp92II | CATG | 4 cut(s) | 247, 539, 593, 682 |
| HspAI | GCGC | 3 cut(s) | 34, 174, 850 |
| KspAI | GTTAAC | 1 cut(s) | 340 |
| Kzo9I | GATC | 4 cut(s) | 517, 558, 633, 781 |
| LmnI | GCTCC | 1 cut(s) | 398 |
| Lsp1109I | GCAGC | 3 cut(s) | 565, 580, 883 |
| LweI | GCATC | 3 cut(s) | 175, 472, 1000 |
| MaeI | CTAG | 4 cut(s) | 99, 515, 549, 606 |
| MaeII | ACGT | 2 cut(s) | 834, 1034 |
| MaeIII | GTNAC | 3 cut(s) | 155, 205, 224 |
| MalI | GATC | 4 cut(s) | 519, 560, 635, 783 |
| MbiI | CCGCTC | 1 cut(s) | 737 |
| MboI | GATC | 4 cut(s) | 517, 558, 633, 781 |
| MboII | GAAGA | 4 cut(s) | 52, 55, 469, 680 |
| MflI | RGATCY | 2 cut(s) | 633, 781 |
| MhlI | GDGCHC | 1 cut(s) | 20 |
| MlsI | TGGCCA | 1 cut(s) | 810 |
| MluCI | AATT | 1 cut(s) | 525 |
| MluNI | TGGCCA | 1 cut(s) | 810 |
| Mox20I | TGGCCA | 1 cut(s) | 810 |
| MscI | TGGCCA | 1 cut(s) | 810 |
| MseI | TTAA | 5 cut(s) | 303, 339, 638, 743, 1042 |
| MslI | CAYNNNNRTG | 1 cut(s) | 347 |
| Msp20I | TGGCCA | 1 cut(s) | 810 |
| MspI | CCGG | 1 cut(s) | 819 |
| MspR9I | CCNGG | 1 cut(s) | 710 |
| MvaI | CCWGG | 1 cut(s) | 710 |
| MvnI | CGCG | 4 cut(s) | 174, 176, 510, 852 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 83, 473, 482, 602, 606, 710, 807, 893 |
| NdeII | GATC | 4 cut(s) | 517, 558, 633, 781 |
| NheI | GCTAGC | 1 cut(s) | 605 |
| NlaIII | CATG | 4 cut(s) | 247, 539, 593, 682 |
| NlaIV | GGNNCC | 1 cut(s) | 783 |
| NmuCI | GTSAC | 1 cut(s) | 224 |
| NspI | RCATGY | 1 cut(s) | 593 |
| OliI | CACNNNNGTG | 1 cut(s) | 347 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 438 |
| PfeI | GAWTC | 4 cut(s) | 216, 265, 616, 652 |
| PkrI | GCNGC | 3 cut(s) | 555, 595, 898 |
| Ppu21I | YACGTR | 1 cut(s) | 835 |
| Psp6I | CCWGG | 1 cut(s) | 708 |
| PspGI | CCWGG | 1 cut(s) | 708 |
| PspN4I | GGNNCC | 1 cut(s) | 783 |
| PstNI | CAGNNNCTG | 1 cut(s) | 890 |
| PsuI | RGATCY | 2 cut(s) | 633, 781 |
| RsaI | GTAC | 1 cut(s) | 833 |
| RsaNI | GTAC | 1 cut(s) | 832 |
| RseI | CAYNNNNRTG | 1 cut(s) | 347 |
| SalI | GTCGAC | 1 cut(s) | 247 |
| SaqAI | TTAA | 5 cut(s) | 303, 339, 638, 743, 1042 |
| SatI | GCNGC | 3 cut(s) | 554, 594, 897 |
| Sau3AI | GATC | 4 cut(s) | 517, 558, 633, 781 |
| ScrFI | CCNGG | 1 cut(s) | 710 |
| SduI | GDGCHC | 1 cut(s) | 20 |
| SfaNI | GCATC | 3 cut(s) | 175, 472, 1000 |
| SfcI | CTRYAG | 1 cut(s) | 345 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 347 |
| Sse9I | AATT | 1 cut(s) | 525 |
| SsiI | CCGC | 9 cut(s) | 164, 176, 276, 669, 683, 737, 905, 969, 1029 |
| SspMI | CTAG | 4 cut(s) | 99, 515, 549, 606 |
| StyD4I | CCNGG | 1 cut(s) | 708 |
| StyI | CCWWGG | 1 cut(s) | 796 |
| TaaI | ACNGT | 4 cut(s) | 182, 337, 349, 892 |
| TaiI | ACGT | 2 cut(s) | 837, 1037 |
| TaqI | TCGA | 5 cut(s) | 248, 432, 441, 561, 1001 |
| TasI | AATT | 1 cut(s) | 525 |
| TfiI | GAWTC | 4 cut(s) | 216, 265, 616, 652 |
| Tru1I | TTAA | 5 cut(s) | 303, 339, 638, 743, 1042 |
| Tru9I | TTAA | 5 cut(s) | 303, 339, 638, 743, 1042 |
| TscAI | CASTG | 4 cut(s) | 304, 340, 354, 585 |
| TseFI | GTSAC | 1 cut(s) | 224 |
| TseI | GCWGC | 3 cut(s) | 553, 593, 896 |
| Tsp45I | GTSAC | 1 cut(s) | 224 |
| TspDTI | ATGAA | 1 cut(s) | 1008 |
| TspGWI | ACGGA | 1 cut(s) | 521 |
| TspRI | CASTG | 4 cut(s) | 304, 340, 354, 585 |
| XceI | RCATGY | 1 cut(s) | 593 |
| XmiI | GTMKAC | 1 cut(s) | 248 |
| XspI | CTAG | 4 cut(s) | 99, 515, 549, 606 |