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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 510 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 237 |
| AccII | CGCG | 4 cut(s) | 154, 350, 540, 542 |
| AciI | CCGC | 2 cut(s) | 350, 419 |
| AcoI | YGGCCR | 1 cut(s) | 245 |
| AfaI | GTAC | 2 cut(s) | 58, 458 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 237, 504 |
| AgsI | TTSAA | 1 cut(s) | 331 |
| AhlI | ACTAGT | 1 cut(s) | 625 |
| AjnI | CCWGG | 5 cut(s) | 242, 461, 497, 558, 664 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 29, 61 |
| AluBI | AGCT | 3 cut(s) | 113, 131, 337 |
| AluI | AGCT | 3 cut(s) | 113, 131, 337 |
| Alw26I | GTCTC | 1 cut(s) | 86 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 565, 671 |
| Ama87I | CYCGRG | 1 cut(s) | 651 |
| AoxI | GGCC | 4 cut(s) | 17, 240, 245, 668 |
| AspLEI | GCGC | 5 cut(s) | 427, 519, 540, 542, 544 |
| AspS9I | GGNCC | 6 cut(s) | 18, 142, 240, 556, 662, 668 |
| AsuHPI | GGTGA | 4 cut(s) | 126, 291, 585, 691 |
| AvaI | CYCGRG | 1 cut(s) | 651 |
| AvaII | GGWCC | 3 cut(s) | 142, 556, 662 |
| BalI | TGGCCA | 1 cut(s) | 247 |
| BccI | CCATC | 5 cut(s) | 239, 256, 313, 446, 610 |
| BceAI | ACGGC | 1 cut(s) | 622 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 191, 225 |
| BciT130I | CCWGG | 5 cut(s) | 244, 463, 499, 560, 666 |
| BclI | TGATCA | 3 cut(s) | 355, 567, 673 |
| BcoDI | GTCTC | 1 cut(s) | 86 |
| BcuI | ACTAGT | 1 cut(s) | 625 |
| BfaI | CTAG | 2 cut(s) | 545, 626 |
| BfmI | CTRYAG | 1 cut(s) | 512 |
| BfuAI | ACCTGC | 1 cut(s) | 510 |
| BlpI | GCTNAGC | 1 cut(s) | 633 |
| Bme1390I | CCNGG | 5 cut(s) | 244, 463, 499, 560, 666 |
| Bme18I | GGWCC | 3 cut(s) | 142, 556, 662 |
| BmeT110I | CYCGRG | 1 cut(s) | 651 |
| BmgT120I | GGNCC | 6 cut(s) | 18, 142, 240, 556, 662, 668 |
| BmiI | GGNNCC | 1 cut(s) | 648 |
| BmrFI | CCNGG | 5 cut(s) | 244, 463, 499, 560, 666 |
| BmsI | GCATC | 2 cut(s) | 146, 183 |
| BoxI | GACNNNNGTC | 1 cut(s) | 561 |
| Bpu10I | CCTNAGC | 1 cut(s) | 597 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 633 |
| BsaI | GGTCTC | 1 cut(s) | 86 |
| BsaJI | CCNNGG | 6 cut(s) | 45, 84, 462, 559, 652, 665 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 237, 504 |
| Bse118I | RCCGGY | 1 cut(s) | 427 |
| Bse1I | ACTGG | 3 cut(s) | 20, 119, 137 |
| BseBI | CCWGG | 5 cut(s) | 244, 463, 499, 560, 666 |
| BseDI | CCNNGG | 6 cut(s) | 45, 84, 462, 559, 652, 665 |
| BseGI | GGATG | 4 cut(s) | 94, 174, 305, 414 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 237, 504 |
| BseMII | CTCAG | 2 cut(s) | 329, 588 |
| BseNI | ACTGG | 3 cut(s) | 20, 119, 137 |
| BsePI | GCGCGC | 2 cut(s) | 538, 540 |
| Bsh1236I | CGCG | 4 cut(s) | 154, 350, 540, 542 |
| Bsh1285I | CGRYCG | 1 cut(s) | 432 |
| BshFI | GGCC | 4 cut(s) | 19, 242, 247, 670 |
| BsiEI | CGRYCG | 1 cut(s) | 432 |
| BsiHKCI | CYCGRG | 1 cut(s) | 651 |
| BsiSI | CCGG | 1 cut(s) | 428 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 237, 504 |
| BsmAI | GTCTC | 1 cut(s) | 86 |
| BsnI | GGCC | 4 cut(s) | 19, 242, 247, 670 |
| Bso31I | GGTCTC | 1 cut(s) | 86 |
| BsoBI | CYCGRG | 1 cut(s) | 651 |
| Bsp143I | GATC | 4 cut(s) | 345, 355, 567, 673 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 633 |
| Bsp68I | TCGCGA | 1 cut(s) | 154 |
| BspACI | CCGC | 2 cut(s) | 350, 419 |
| BspANI | GGCC | 4 cut(s) | 19, 242, 247, 670 |
| BspCNI | CTCAG | 2 cut(s) | 330, 589 |
| BspFNI | CGCG | 4 cut(s) | 154, 350, 540, 542 |
| BspLI | GGNNCC | 1 cut(s) | 648 |
| BspMI | ACCTGC | 1 cut(s) | 510 |
| BspTNI | GGTCTC | 1 cut(s) | 86 |
| BsrFI | RCCGGY | 1 cut(s) | 427 |
| BsrI | ACTGG | 3 cut(s) | 20, 119, 137 |
| BssAI | RCCGGY | 1 cut(s) | 427 |
| BssECI | CCNNGG | 6 cut(s) | 45, 84, 462, 559, 652, 665 |
| BssHII | GCGCGC | 2 cut(s) | 538, 540 |
| BssMI | GATC | 4 cut(s) | 345, 355, 567, 673 |
| BssT1I | CCWWGG | 1 cut(s) | 45 |
| Bst2UI | CCWGG | 5 cut(s) | 244, 463, 499, 560, 666 |
| Bst6I | CTCTTC | 2 cut(s) | 159, 497 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 629 |
| BstC8I | GCNNGC | 4 cut(s) | 152, 423, 540, 542 |
| BstDEI | CTNAG | 3 cut(s) | 338, 597, 633 |
| BstF5I | GGATG | 4 cut(s) | 94, 174, 305, 414 |
| BstFNI | CGCG | 4 cut(s) | 154, 350, 540, 542 |
| BstHHI | GCGC | 5 cut(s) | 427, 519, 540, 542, 544 |
| BstKTI | GATC | 4 cut(s) | 348, 358, 570, 676 |
| BstMAI | GTCTC | 1 cut(s) | 86 |
| BstMBI | GATC | 4 cut(s) | 345, 355, 567, 673 |
| BstMCI | CGRYCG | 1 cut(s) | 432 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 156, 431, 539, 548, 629 |
| BstNI | CCWGG | 5 cut(s) | 244, 463, 499, 560, 666 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 561 |
| BstSCI | CCNGG | 5 cut(s) | 242, 461, 497, 558, 664 |
| BstSFI | CTRYAG | 1 cut(s) | 512 |
| BstUI | CGCG | 4 cut(s) | 154, 350, 540, 542 |
| BsuRI | GGCC | 4 cut(s) | 19, 242, 247, 670 |
| BtgZI | GCGATG | 1 cut(s) | 169 |
| BtsCI | GGATG | 4 cut(s) | 94, 174, 305, 414 |
| BtsI | GCAGTG | 1 cut(s) | 486 |
| BtsIMutI | CAGTG | 2 cut(s) | 144, 486 |
| BtuMI | TCGCGA | 1 cut(s) | 154 |
| BveI | ACCTGC | 1 cut(s) | 510 |
| Cac8I | GCNNGC | 4 cut(s) | 152, 423, 540, 542 |
| CaiI | CAGNNNCTG | 2 cut(s) | 565, 671 |
| CfoI | GCGC | 5 cut(s) | 427, 519, 540, 542, 544 |
| Cfr10I | RCCGGY | 1 cut(s) | 427 |
| Cfr13I | GGNCC | 6 cut(s) | 18, 142, 240, 556, 662, 668 |
| Csp6I | GTAC | 2 cut(s) | 57, 457 |
| CviAII | CATG | 1 cut(s) | 188 |
| CviQI | GTAC | 2 cut(s) | 57, 457 |
| DdeI | CTNAG | 3 cut(s) | 338, 597, 633 |
| DpnI | GATC | 4 cut(s) | 347, 357, 569, 675 |
| DpnII | GATC | 4 cut(s) | 345, 355, 567, 673 |
| EaeI | YGGCCR | 1 cut(s) | 245 |
| Eam1104I | CTCTTC | 2 cut(s) | 159, 497 |
| EarI | CTCTTC | 2 cut(s) | 159, 497 |
| Eco130I | CCWWGG | 1 cut(s) | 45 |
| Eco31I | GGTCTC | 1 cut(s) | 86 |
| Eco47I | GGWCC | 3 cut(s) | 142, 556, 662 |
| Eco88I | CYCGRG | 1 cut(s) | 651 |
| EcoO109I | RGGNCCY | 1 cut(s) | 668 |
| EcoRII | CCWGG | 5 cut(s) | 242, 461, 497, 558, 664 |
| EcoT14I | CCWWGG | 1 cut(s) | 45 |
| ErhI | CCWWGG | 1 cut(s) | 45 |
| FaeI | CATG | 1 cut(s) | 191 |
| FaiI | YATR | 3 cut(s) | 148, 189, 360 |
| FatI | CATG | 1 cut(s) | 187 |
| FauI | CCCGC | 1 cut(s) | 426 |
| FbaI | TGATCA | 3 cut(s) | 355, 567, 673 |
| FokI | GGATG | 4 cut(s) | 101, 161, 292, 401 |
| FspBI | CTAG | 2 cut(s) | 545, 626 |
| GlaI | GCGC | 5 cut(s) | 426, 518, 539, 541, 543 |
| HaeIII | GGCC | 4 cut(s) | 19, 242, 247, 670 |
| HapII | CCGG | 1 cut(s) | 428 |
| HhaI | GCGC | 5 cut(s) | 427, 519, 540, 542, 544 |
| Hin1II | CATG | 1 cut(s) | 191 |
| Hin6I | GCGC | 5 cut(s) | 425, 517, 538, 540, 542 |
| HinP1I | GCGC | 5 cut(s) | 425, 517, 538, 540, 542 |
| HindIII | AAGCTT | 1 cut(s) | 129 |
| HinfI | GANTC | 2 cut(s) | 296, 317 |
| HpaII | CCGG | 1 cut(s) | 428 |
| HphI | GGTGA | 4 cut(s) | 126, 291, 585, 691 |
| Hpy166II | GTNNAC | 2 cut(s) | 13, 459 |
| Hpy188I | TCNGA | 3 cut(s) | 402, 567, 609 |
| Hpy188III | TCNNGA | 4 cut(s) | 153, 252, 554, 660 |
| Hpy8I | GTNNAC | 2 cut(s) | 13, 459 |
| HpyAV | CCTTC | 6 cut(s) | 367, 440, 469, 585, 604, 691 |
| HpyCH4V | TGCA | 2 cut(s) | 101, 159 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 156, 431, 539, 548, 629 |
| HpyF3I | CTNAG | 3 cut(s) | 338, 597, 633 |
| Hsp92II | CATG | 1 cut(s) | 191 |
| HspAI | GCGC | 5 cut(s) | 425, 517, 538, 540, 542 |
| Ksp22I | TGATCA | 3 cut(s) | 355, 567, 673 |
| Kzo9I | GATC | 4 cut(s) | 345, 355, 567, 673 |
| LmnI | GCTCC | 1 cut(s) | 652 |
| LweI | GCATC | 2 cut(s) | 146, 183 |
| MaeI | CTAG | 2 cut(s) | 545, 626 |
| MaeIII | GTNAC | 1 cut(s) | 297 |
| MalI | GATC | 4 cut(s) | 347, 357, 569, 675 |
| MboI | GATC | 4 cut(s) | 345, 355, 567, 673 |
| MboII | GAAGA | 4 cut(s) | 118, 176, 299, 514 |
| MfeI | CAATTG | 3 cut(s) | 235, 581, 687 |
| MlsI | TGGCCA | 1 cut(s) | 247 |
| MluCI | AATT | 4 cut(s) | 235, 322, 581, 687 |
| MluNI | TGGCCA | 1 cut(s) | 247 |
| MlyI | GAGTC | 2 cut(s) | 305, 311 |
| MnlI | CCTC | 7 cut(s) | 27, 79, 272, 498, 541, 613, 647 |
| Mox20I | TGGCCA | 1 cut(s) | 247 |
| MscI | TGGCCA | 1 cut(s) | 247 |
| MseI | TTAA | 1 cut(s) | 641 |
| MslI | CAYNNNNRTG | 1 cut(s) | 179 |
| Msp20I | TGGCCA | 1 cut(s) | 247 |
| MspI | CCGG | 1 cut(s) | 428 |
| MspR9I | CCNGG | 5 cut(s) | 244, 463, 499, 560, 666 |
| MunI | CAATTG | 3 cut(s) | 235, 581, 687 |
| MvaI | CCWGG | 5 cut(s) | 244, 463, 499, 560, 666 |
| MvnI | CGCG | 4 cut(s) | 154, 350, 540, 542 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 156, 431, 539, 548, 629 |
| NdeII | GATC | 4 cut(s) | 345, 355, 567, 673 |
| NlaIII | CATG | 1 cut(s) | 191 |
| NlaIV | GGNNCC | 1 cut(s) | 648 |
| NmeAIII | GCCGAG | 1 cut(s) | 109 |
| NmuCI | GTSAC | 1 cut(s) | 297 |
| NruI | TCGCGA | 1 cut(s) | 154 |
| PauI | GCGCGC | 2 cut(s) | 538, 540 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 237 |
| PfoI | TCCNGGA | 1 cut(s) | 497 |
| PleI | GAGTC | 2 cut(s) | 304, 311 |
| PpsI | GAGTC | 2 cut(s) | 304, 311 |
| PshAI | GACNNNNGTC | 1 cut(s) | 561 |
| Psp6I | CCWGG | 5 cut(s) | 242, 461, 497, 558, 664 |
| PspGI | CCWGG | 5 cut(s) | 242, 461, 497, 558, 664 |
| PspN4I | GGNNCC | 1 cut(s) | 648 |
| PspPI | GGNCC | 6 cut(s) | 18, 142, 240, 556, 662, 668 |
| PstNI | CAGNNNCTG | 2 cut(s) | 565, 671 |
| PteI | GCGCGC | 2 cut(s) | 538, 540 |
| RruI | TCGCGA | 1 cut(s) | 154 |
| RsaI | GTAC | 2 cut(s) | 58, 458 |
| RsaNI | GTAC | 2 cut(s) | 57, 457 |
| RseI | CAYNNNNRTG | 1 cut(s) | 179 |
| SaqAI | TTAA | 1 cut(s) | 641 |
| Sau3AI | GATC | 4 cut(s) | 345, 355, 567, 673 |
| Sau96I | GGNCC | 6 cut(s) | 18, 142, 240, 556, 662, 668 |
| SchI | GAGTC | 2 cut(s) | 305, 311 |
| ScrFI | CCNGG | 5 cut(s) | 244, 463, 499, 560, 666 |
| SetI | ASST | 8 cut(s) | 47, 115, 133, 198, 339, 524, 598, 704 |
| SfaNI | GCATC | 2 cut(s) | 146, 183 |
| SfcI | CTRYAG | 1 cut(s) | 512 |
| SinI | GGWCC | 3 cut(s) | 142, 556, 662 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 179 |
| SpeI | ACTAGT | 1 cut(s) | 625 |
| Sse9I | AATT | 4 cut(s) | 235, 322, 581, 687 |
| SsiI | CCGC | 2 cut(s) | 350, 419 |
| SspMI | CTAG | 2 cut(s) | 545, 626 |
| StyD4I | CCNGG | 5 cut(s) | 242, 461, 497, 558, 664 |
| StyI | CCWWGG | 1 cut(s) | 45 |
| TaqI | TCGA | 1 cut(s) | 198 |
| TasI | AATT | 4 cut(s) | 235, 322, 581, 687 |
| TatI | WGTACW | 1 cut(s) | 56 |
| Tru1I | TTAA | 1 cut(s) | 641 |
| Tru9I | TTAA | 1 cut(s) | 641 |
| TscAI | CASTG | 2 cut(s) | 144, 486 |
| TseFI | GTSAC | 1 cut(s) | 297 |
| Tsp45I | GTSAC | 1 cut(s) | 297 |
| TspDTI | ATGAA | 1 cut(s) | 204 |
| TspRI | CASTG | 2 cut(s) | 144, 486 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 237 |
| VpaK11BI | GGWCC | 3 cut(s) | 142, 556, 662 |
| XspI | CTAG | 2 cut(s) | 545, 626 |