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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 431 |
| AclWI | GGATC | 2 cut(s) | 209, 401 |
| AcsI | RAATTY | 1 cut(s) | 385 |
| AcuI | CTGAAG | 3 cut(s) | 276, 285, 347 |
| AfeI | AGCGCT | 1 cut(s) | 285 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 250 |
| AflIII | ACRYGT | 1 cut(s) | 471 |
| AgsI | TTSAA | 3 cut(s) | 67, 349, 385 |
| AjnI | CCWGG | 2 cut(s) | 243, 362 |
| AluBI | AGCT | 4 cut(s) | 102, 292, 325, 331 |
| AluI | AGCT | 4 cut(s) | 102, 292, 325, 331 |
| Alw21I | GWGCWC | 1 cut(s) | 457 |
| AlwI | GGATC | 2 cut(s) | 209, 401 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 254 |
| Ama87I | CYCGRG | 1 cut(s) | 287 |
| Aor51HI | AGCGCT | 1 cut(s) | 285 |
| AoxI | GGCC | 1 cut(s) | 241 |
| ApeKI | GCWGC | 4 cut(s) | 49, 185, 281, 322 |
| ApoI | RAATTY | 1 cut(s) | 385 |
| AspLEI | GCGC | 1 cut(s) | 286 |
| AsuC2I | CCSGG | 1 cut(s) | 165 |
| AsuHPI | GGTGA | 2 cut(s) | 386, 515 |
| AvaI | CYCGRG | 1 cut(s) | 287 |
| BbsI | GAAGAC | 1 cut(s) | 426 |
| Bbv12I | GWGCWC | 1 cut(s) | 457 |
| BbvI | GCAGC | 4 cut(s) | 61, 197, 293, 334 |
| BciT130I | CCWGG | 2 cut(s) | 245, 364 |
| BclI | TGATCA | 1 cut(s) | 84 |
| BcnI | CCSGG | 1 cut(s) | 165 |
| BfmI | CTRYAG | 1 cut(s) | 223 |
| BfoI | RGCGCY | 1 cut(s) | 287 |
| BisI | GCNGC | 4 cut(s) | 50, 186, 282, 323 |
| BlsI | GCNGC | 4 cut(s) | 51, 187, 283, 324 |
| Bme1390I | CCNGG | 3 cut(s) | 165, 245, 364 |
| BmeT110I | CYCGRG | 1 cut(s) | 287 |
| BmiI | GGNNCC | 1 cut(s) | 208 |
| BmrFI | CCNGG | 3 cut(s) | 165, 245, 364 |
| BmrI | ACTGGG | 3 cut(s) | 306, 520, 541 |
| BmsI | GCATC | 2 cut(s) | 317, 454 |
| BmuI | ACTGGG | 3 cut(s) | 306, 520, 541 |
| BpiI | GAAGAC | 1 cut(s) | 426 |
| BpuEI | CTTGAG | 1 cut(s) | 338 |
| BpuMI | CCSGG | 1 cut(s) | 165 |
| BsaJI | CCNNGG | 2 cut(s) | 164, 363 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 250 |
| Bse1I | ACTGG | 3 cut(s) | 301, 526, 547 |
| BseBI | CCWGG | 2 cut(s) | 245, 364 |
| BseDI | CCNNGG | 2 cut(s) | 164, 363 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 250 |
| BseMII | CTCAG | 1 cut(s) | 216 |
| BseNI | ACTGG | 3 cut(s) | 301, 526, 547 |
| BseRI | GAGGAG | 1 cut(s) | 133 |
| BseXI | GCAGC | 4 cut(s) | 61, 197, 293, 334 |
| BshFI | GGCC | 1 cut(s) | 243 |
| BsiHKAI | GWGCWC | 1 cut(s) | 457 |
| BsiHKCI | CYCGRG | 1 cut(s) | 287 |
| BsiSI | CCGG | 2 cut(s) | 164, 240 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 250 |
| BsmI | GAATGC | 1 cut(s) | 566 |
| BsnI | GGCC | 1 cut(s) | 243 |
| BsoBI | CYCGRG | 1 cut(s) | 287 |
| Bsp1286I | GDGCHC | 1 cut(s) | 457 |
| Bsp143I | GATC | 3 cut(s) | 84, 214, 406 |
| BspANI | GGCC | 1 cut(s) | 243 |
| BspCNI | CTCAG | 1 cut(s) | 215 |
| BspLI | GGNNCC | 1 cut(s) | 208 |
| BspPI | GGATC | 2 cut(s) | 209, 401 |
| BsrI | ACTGG | 3 cut(s) | 301, 526, 547 |
| BssECI | CCNNGG | 2 cut(s) | 164, 363 |
| BssMI | GATC | 3 cut(s) | 84, 214, 406 |
| Bst2UI | CCWGG | 2 cut(s) | 245, 364 |
| Bst4CI | ACNGT | 2 cut(s) | 425, 503 |
| Bst6I | CTCTTC | 3 cut(s) | 252, 261, 489 |
| BstDEI | CTNAG | 4 cut(s) | 25, 116, 202, 398 |
| BstEII | GGTNACC | 2 cut(s) | 367, 392 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 248 |
| BstH2I | RGCGCY | 1 cut(s) | 287 |
| BstHHI | GCGC | 1 cut(s) | 286 |
| BstKTI | GATC | 3 cut(s) | 87, 217, 409 |
| BstMBI | GATC | 3 cut(s) | 84, 214, 406 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 322, 328 |
| BstNI | CCWGG | 2 cut(s) | 245, 364 |
| BstNSI | RCATGY | 1 cut(s) | 64 |
| BstPI | GGTNACC | 2 cut(s) | 367, 392 |
| BstSCI | CCNGG | 3 cut(s) | 163, 243, 362 |
| BstSFI | CTRYAG | 1 cut(s) | 223 |
| BstV1I | GCAGC | 4 cut(s) | 61, 197, 293, 334 |
| BstV2I | GAAGAC | 1 cut(s) | 426 |
| BsuRI | GGCC | 1 cut(s) | 243 |
| BtsI | GCAGTG | 2 cut(s) | 195, 372 |
| BtsIMutI | CAGTG | 2 cut(s) | 195, 372 |
| CaiI | CAGNNNCTG | 1 cut(s) | 254 |
| CfoI | GCGC | 1 cut(s) | 286 |
| CseI | GACGC | 1 cut(s) | 137 |
| CviAII | CATG | 3 cut(s) | 53, 61, 413 |
| DdeI | CTNAG | 4 cut(s) | 25, 116, 202, 398 |
| DpnI | GATC | 3 cut(s) | 86, 216, 408 |
| DpnII | GATC | 3 cut(s) | 84, 214, 406 |
| Eam1104I | CTCTTC | 3 cut(s) | 252, 261, 489 |
| EarI | CTCTTC | 3 cut(s) | 252, 261, 489 |
| Eco47III | AGCGCT | 1 cut(s) | 285 |
| Eco57I | CTGAAG | 3 cut(s) | 276, 285, 347 |
| Eco88I | CYCGRG | 1 cut(s) | 287 |
| Eco91I | GGTNACC | 2 cut(s) | 367, 392 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 248 |
| EcoO65I | GGTNACC | 2 cut(s) | 367, 392 |
| EcoRI | GAATTC | 1 cut(s) | 385 |
| EcoRII | CCWGG | 2 cut(s) | 243, 362 |
| FaeI | CATG | 3 cut(s) | 56, 64, 416 |
| FaiI | YATR | 8 cut(s) | 54, 62, 74, 157, 225, 414, 431, 557 |
| FatI | CATG | 3 cut(s) | 52, 60, 412 |
| FbaI | TGATCA | 1 cut(s) | 84 |
| Fnu4HI | GCNGC | 4 cut(s) | 50, 186, 282, 323 |
| Fsp4HI | GCNGC | 4 cut(s) | 50, 186, 282, 323 |
| GlaI | GCGC | 1 cut(s) | 285 |
| GluI | GCNGC | 4 cut(s) | 50, 186, 282, 323 |
| HaeII | RGCGCY | 1 cut(s) | 287 |
| HaeIII | GGCC | 1 cut(s) | 243 |
| HapII | CCGG | 2 cut(s) | 164, 240 |
| HgaI | GACGC | 1 cut(s) | 137 |
| HhaI | GCGC | 1 cut(s) | 286 |
| Hin1II | CATG | 3 cut(s) | 56, 64, 416 |
| Hin6I | GCGC | 1 cut(s) | 284 |
| HinP1I | GCGC | 1 cut(s) | 284 |
| HindIII | AAGCTT | 1 cut(s) | 100 |
| HinfI | GANTC | 3 cut(s) | 236, 260, 521 |
| HpaII | CCGG | 2 cut(s) | 164, 240 |
| HphI | GGTGA | 2 cut(s) | 386, 515 |
| Hpy166II | GTNNAC | 1 cut(s) | 193 |
| Hpy188I | TCNGA | 1 cut(s) | 265 |
| Hpy8I | GTNNAC | 1 cut(s) | 193 |
| HpyAV | CCTTC | 3 cut(s) | 298, 475, 562 |
| HpyCH4III | ACNGT | 2 cut(s) | 425, 503 |
| HpyCH4IV | ACGT | 1 cut(s) | 473 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 322, 328 |
| HpyF3I | CTNAG | 4 cut(s) | 25, 116, 202, 398 |
| HpySE526I | ACGT | 1 cut(s) | 473 |
| Hsp92II | CATG | 3 cut(s) | 56, 64, 416 |
| HspAI | GCGC | 1 cut(s) | 284 |
| Ksp22I | TGATCA | 1 cut(s) | 84 |
| Kzo9I | GATC | 3 cut(s) | 84, 214, 406 |
| Lsp1109I | GCAGC | 4 cut(s) | 61, 197, 293, 334 |
| LweI | GCATC | 2 cut(s) | 317, 454 |
| MaeII | ACGT | 1 cut(s) | 473 |
| MaeIII | GTNAC | 3 cut(s) | 367, 392, 503 |
| MalI | GATC | 3 cut(s) | 86, 216, 408 |
| MboI | GATC | 3 cut(s) | 84, 214, 406 |
| MboII | GAAGA | 7 cut(s) | 148, 269, 278, 313, 431, 506, 547 |
| MhlI | GDGCHC | 1 cut(s) | 457 |
| MluCI | AATT | 2 cut(s) | 177, 385 |
| MlyI | GAGTC | 1 cut(s) | 269 |
| MmeI | TCCRAC | 1 cut(s) | 510 |
| MnlI | CCTC | 7 cut(s) | 42, 154, 244, 262, 268, 420, 490 |
| MslI | CAYNNNNRTG | 2 cut(s) | 462, 476 |
| MspA1I | CMGCKG | 1 cut(s) | 325 |
| MspI | CCGG | 2 cut(s) | 164, 240 |
| MspR9I | CCNGG | 3 cut(s) | 165, 245, 364 |
| Mva1269I | GAATGC | 1 cut(s) | 566 |
| MvaI | CCWGG | 2 cut(s) | 245, 364 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 322, 328 |
| NciI | CCSGG | 1 cut(s) | 165 |
| NdeII | GATC | 3 cut(s) | 84, 214, 406 |
| NlaIII | CATG | 3 cut(s) | 56, 64, 416 |
| NlaIV | GGNNCC | 1 cut(s) | 208 |
| NmuCI | GTSAC | 2 cut(s) | 392, 503 |
| NspI | RCATGY | 1 cut(s) | 64 |
| PaeR7I | CTCGAG | 1 cut(s) | 287 |
| PctI | GAATGC | 1 cut(s) | 566 |
| PfeI | GAWTC | 2 cut(s) | 236, 521 |
| PkrI | GCNGC | 4 cut(s) | 51, 187, 283, 324 |
| PleI | GAGTC | 1 cut(s) | 268 |
| PpsI | GAGTC | 1 cut(s) | 268 |
| PsiI | TTATAA | 1 cut(s) | 431 |
| Psp6I | CCWGG | 2 cut(s) | 243, 362 |
| PspEI | GGTNACC | 2 cut(s) | 367, 392 |
| PspGI | CCWGG | 2 cut(s) | 243, 362 |
| PspN4I | GGNNCC | 1 cut(s) | 208 |
| PspXI | VCTCGAGB | 1 cut(s) | 287 |
| PstNI | CAGNNNCTG | 1 cut(s) | 254 |
| PvuII | CAGCTG | 1 cut(s) | 325 |
| RseI | CAYNNNNRTG | 2 cut(s) | 462, 476 |
| SatI | GCNGC | 4 cut(s) | 50, 186, 282, 323 |
| Sau3AI | GATC | 3 cut(s) | 84, 214, 406 |
| SchI | GAGTC | 1 cut(s) | 269 |
| ScrFI | CCNGG | 3 cut(s) | 165, 245, 364 |
| SduI | GDGCHC | 1 cut(s) | 457 |
| SfaNI | GCATC | 2 cut(s) | 317, 454 |
| SfcI | CTRYAG | 1 cut(s) | 223 |
| Sfr274I | CTCGAG | 1 cut(s) | 287 |
| SlaI | CTCGAG | 1 cut(s) | 287 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 462, 476 |
| SmlI | CTYRAG | 2 cut(s) | 287, 353 |
| SmoI | CTYRAG | 2 cut(s) | 287, 353 |
| Sse9I | AATT | 2 cut(s) | 177, 385 |
| StyD4I | CCNGG | 3 cut(s) | 163, 243, 362 |
| TaaI | ACNGT | 2 cut(s) | 425, 503 |
| TaiI | ACGT | 1 cut(s) | 476 |
| TaqI | TCGA | 1 cut(s) | 288 |
| TasI | AATT | 2 cut(s) | 177, 385 |
| TfiI | GAWTC | 2 cut(s) | 236, 521 |
| TscAI | CASTG | 2 cut(s) | 195, 379 |
| TseFI | GTSAC | 2 cut(s) | 392, 503 |
| TseI | GCWGC | 4 cut(s) | 49, 185, 281, 322 |
| Tsp45I | GTSAC | 2 cut(s) | 392, 503 |
| TspDTI | ATGAA | 3 cut(s) | 494, 507, 544 |
| TspRI | CASTG | 2 cut(s) | 195, 379 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 248 |
| XapI | RAATTY | 1 cut(s) | 385 |
| XceI | RCATGY | 1 cut(s) | 64 |
| XhoI | CTCGAG | 1 cut(s) | 287 |