Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007222.1

Orthogroup ID

OG0000057

Physical Location & Seq

Genomic Coordinates Forward (+)

6709 .. 9970

Gene Structure 3262 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007222.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

atgtcaactgaacagggaggaagtcaactacccgttactgggggaaagaatgtcactaccaatcaggcaagcgatgttgtcaatacttctgttgcaactaatactgcaggtggcgcggcaggagaggccttcgttcctacgcccatcccagagggagcaactattgaacaacagttcgcgatcatcatggctgatatcgacagacctcgagaaaagatagtcgctgattttgacagggaaaacgctaagtcagagcagcgcatacttgaactgaaccagcgcatggcccagcttgctgaagagactaggcaacaggtggaacaatcagctattgaatcaagagcacattctagaagtatcgctgatgatcacaccctgcaacaaaagcaaatcatggaggccatcatgaaccaaagcaagcacactgtatcaaaattggcaactcttcgcaatgaagagtctaaactcgctacccaggttgccatgcataaggctgaattggaccaggctaaggaggttatgaataaagcattgggagatcccaatgtcatcttaggttctcttggtcagtcctctggattcggcaagtatataccactgaatgctcgggagaagactaacagcagcaccgttacgccttctgtagccgttactgccacgtcagctaagagtaaggaaaaagccctggtaattagcggtagcaagactactcaaccggtcgggcagaatagtaaaactctgaaattctttgagggcaaccctgttgatccggttgtatttgctcaatatgatagcgatggggcagaaaatgggtacgaagaattcccaagaaattactatggcattgaccaggcaagcaatccgatcaagataaccgctttagtaaaggatgtgaccacgccagcatttactcttgaacagtccactactccccgggccatttgccttggggaaggaacaacgactgctagccaagctatacctttgcaaaccgctcgccagactgtggcaacacatcctcctcctggtccagactatgtgagatgcgaagaggttgaggagatgatcaggttggctaaccctagggcccaccaggatgaggttttggttccgattgcgaatgacatggagcttatggaggcgacgatcgccgtcgatgtatggcgacgagccggagctgatgtcactgtggcttctgtggagaagcagttgagggttgaggcttgtcatggggttgaaatcatcgctgatgctttggtttcgtactatggccagagctccttcaatctcattactcttaactcttttgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005886 GO:0005911 GO:0006081 GO:0006082 GO:0006089 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009438 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0019172 GO:0019249 GO:0019752 GO:0030054 GO:0031090 GO:0032787 GO:0042180 GO:0042182 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044248 GO:0044249 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046185 GO:0046394 GO:0046686 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051596 GO:0055044 GO:0061727 GO:0065007 GO:0071704 GO:0071944 GO:0072330 GO:0080134 GO:0080135 GO:0098588 GO:0098805 GO:1900407 GO:1900409 GO:1901575 GO:1901576 GO:1901615 GO:1901617 GO:1902882 GO:1902884

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DJ-1_PfpI

Protein Analysis

437

Amino Acids

47.21

Weight (kDa)

5.06

Isoelectric Point (pI)

39.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000057)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g00341 FvH4_2g18201 FvH4_2g24491 FvH4_2g24511 FvH4_3g22961 FvH4_3g33532 FvH4_3g33534 FvH4_4g05275 FvH4_4g12372 FvH4_5g20143 FvH4_7g12392
pyrus_communis	pycom12g16120
rosa_chinensis	RchiOBHm_Chr5g0023531 RchiOBHm_Chr6g0271201
rosa_laevigata	RLG00000030639
rosa_multiflora	Rmu_co8016136.1_g000001 Rmu_co8027180.1_g000001 Rmu_co8041016.1_g000001 Rmu_co8052812.1_g000001 Rmu_co8152468.1_g000001 Rmu_co8165796.1_g000001 Rmu_co8170214.1_g000001 Rmu_co8227433.1_g000001 Rmu_co8241379.1_g000001 Rmu_co8254305.1_g000001 Rmu_co8258647.1_g000001 Rmu_co8265535.1_g000002 Rmu_co8276845.1_g000001 Rmu_co8296303.1_g000001 Rmu_co8304827.1_g000001 Rmu_co8308345.1_g000001 Rmu_co8320493.1_g000002 Rmu_co8326955.1_g000001 Rmu_co8331007.1_g000001 Rmu_co8335625.1_g000001 Rmu_co8354465.1_g000001 Rmu_co8360201.1_g000001 Rmu_co8362075.1_g000002 Rmu_co8362991.1_g000001 Rmu_co8364567.1_g000001 Rmu_co8365273.1_g000001 Rmu_co8387267.1_g000001 Rmu_co8395251.1_g000002 Rmu_co8396677.1_g000001 Rmu_co8457659.1_g000001 Rmu_co8478117.1_g000001 Rmu_co8487163.1_g000001 Rmu_co8498169.1_g000001 Rmu_sc0000029.1_g000022 Rmu_sc0000063.1_g000007 Rmu_sc0000112.1_g000020 Rmu_sc0000146.1_g000006 Rmu_sc0000245.1_g000015 Rmu_sc0000276.1_g000036 Rmu_sc0000334.1_g000033 Rmu_sc0000334.1_g000034 Rmu_sc0000434.1_g000019 Rmu_sc0000441.1_g000118 Rmu_sc0000533.1_g000054 Rmu_sc0000533.1_g000055 Rmu_sc0000595.1_g000041 Rmu_sc0000663.1_g000019 Rmu_sc0000673.1_g000002 Rmu_sc0000698.1_g000102 Rmu_sc0000745.1_g000007 Rmu_sc0000768.1_g000018 Rmu_sc0000811.1_g000012 Rmu_sc0000826.1_g000009 Rmu_sc0000826.1_g000011 Rmu_sc0001051.1_g000042 Rmu_sc0001051.1_g000043 Rmu_sc0001148.1_g000014 Rmu_sc0001198.1_g000021 Rmu_sc0001227.1_g000008 Rmu_sc0001250.1_g000028 Rmu_sc0001395.1_g000019 Rmu_sc0001395.1_g000020 Rmu_sc0001396.1_g000002 Rmu_sc0001424.1_g000007 Rmu_sc0001455.1_g000025 Rmu_sc0001455.1_g000029 Rmu_sc0001499.1_g000036 Rmu_sc0001539.1_g000001 Rmu_sc0001562.1_g000027 Rmu_sc0001563.1_g000024 Rmu_sc0001719.1_g000022 Rmu_sc0001796.1_g000008 Rmu_sc0001884.1_g000022 Rmu_sc0001903.1_g000018 Rmu_sc0002041.1_g000012 Rmu_sc0002096.1_g000002 Rmu_sc0002126.1_g000027 Rmu_sc0002181.1_g000010 Rmu_sc0002259.1_g000004 Rmu_sc0002279.1_g000018 Rmu_sc0002312.1_g000060 Rmu_sc0002383.1_g000011 Rmu_sc0002401.1_g000012 Rmu_sc0002509.1_g000028 Rmu_sc0002569.1_g000008 Rmu_sc0002587.1_g000037 Rmu_sc0002665.1_g000006 Rmu_sc0002698.1_g000018 Rmu_sc0002724.1_g000002 Rmu_sc0002727.1_g000011 Rmu_sc0002927.1_g000055 Rmu_sc0002927.1_g000056 Rmu_sc0002943.1_g000009 Rmu_sc0002943.1_g000023 Rmu_sc0002998.1_g000001 Rmu_sc0003089.1_g000036 Rmu_sc0003127.1_g000022 Rmu_sc0003127.1_g000040 Rmu_sc0003207.1_g000010 Rmu_sc0003207.1_g000011 Rmu_sc0003275.1_g000034 Rmu_sc0003275.1_g000036 Rmu_sc0003337.1_g000047 Rmu_sc0003376.1_g000004 Rmu_sc0003522.1_g000024 Rmu_sc0003613.1_g000007 Rmu_sc0003708.1_g000026 Rmu_sc0003784.1_g000018 Rmu_sc0004079.1_g000005 Rmu_sc0004092.1_g000017 Rmu_sc0004168.1_g000058 Rmu_sc0004174.1_g000019 Rmu_sc0004199.1_g000049 Rmu_sc0004230.1_g000005 Rmu_sc0004283.1_g000021 Rmu_sc0004283.1_g000022 Rmu_sc0004314.1_g000017 Rmu_sc0004538.1_g000006 Rmu_sc0004542.1_g000011 Rmu_sc0004602.1_g000024 Rmu_sc0004641.1_g000006 Rmu_sc0004862.1_g000011 Rmu_sc0004941.1_g000043 Rmu_sc0005003.1_g000003 Rmu_sc0005112.1_g000018 Rmu_sc0005144.1_g000014 Rmu_sc0005266.1_g000014 Rmu_sc0005418.1_g000004 Rmu_sc0005627.1_g000006 Rmu_sc0005652.1_g000022 Rmu_sc0005747.1_g000032 Rmu_sc0005982.1_g000013 Rmu_sc0006050.1_g000017 Rmu_sc0006059.1_g000035 Rmu_sc0006128.1_g000002 Rmu_sc0006228.1_g000009 Rmu_sc0006243.1_g000009 Rmu_sc0006300.1_g000004 Rmu_sc0006463.1_g000007 Rmu_sc0006579.1_g000016 Rmu_sc0006595.1_g000011 Rmu_sc0006624.1_g000006 Rmu_sc0006624.1_g000007 Rmu_sc0006624.1_g000008 Rmu_sc0006674.1_g000025 Rmu_sc0006792.1_g000013 Rmu_sc0006872.1_g000022 Rmu_sc0006984.1_g000009 Rmu_sc0006984.1_g000010 Rmu_sc0006986.1_g000011 Rmu_sc0007016.1_g000001 Rmu_sc0007221.1_g000006 Rmu_sc0007222.1_g000005 Rmu_sc0007222.1_g000006 Rmu_sc0007251.1_g000001 Rmu_sc0007777.1_g000037 Rmu_sc0007826.1_g000018 Rmu_sc0008053.1_g000015 Rmu_sc0008502.1_g000006 Rmu_sc0008659.1_g000009 Rmu_sc0009045.1_g000009 Rmu_sc0009045.1_g000010 Rmu_sc0009060.1_g000012 Rmu_sc0009360.1_g000024 Rmu_sc0009431.1_g000001 Rmu_sc0009606.1_g000014 Rmu_sc0009774.1_g000001 Rmu_sc0009844.1_g000014 Rmu_sc0010313.1_g000001 Rmu_sc0010454.1_g000008 Rmu_sc0010543.1_g000016 Rmu_sc0010900.1_g000002 Rmu_sc0010925.1_g000009 Rmu_sc0011136.1_g000012 Rmu_sc0011534.1_g000004 Rmu_sc0011809.1_g000007 Rmu_sc0011917.1_g000005 Rmu_sc0012103.1_g000001 Rmu_sc0012287.1_g000001 Rmu_sc0012303.1_g000007 Rmu_sc0012344.1_g000009 Rmu_sc0012674.1_g000007 Rmu_sc0012686.1_g000001 Rmu_sc0012742.1_g000005 Rmu_sc0012746.1_g000026 Rmu_sc0012746.1_g000027 Rmu_sc0013419.1_g000008 Rmu_sc0014866.1_g000004 Rmu_sc0015325.1_g000011 Rmu_sc0015486.1_g000005 Rmu_sc0015651.1_g000002 Rmu_sc0015783.1_g000001 Rmu_sc0016387.1_g000009 Rmu_sc0017518.1_g000005 Rmu_sc0018480.1_g000001 Rmu_sc0018537.1_g000003 Rmu_sc0019200.1_g000002 Rmu_sc0019544.1_g000014 Rmu_sc0019544.1_g000015 Rmu_sc0019873.1_g000001 Rmu_sc0020392.1_g000001 Rmu_sc0020466.1_g000001 Rmu_sc0022008.1_g000001 Rmu_sc0022008.1_g000002 Rmu_sc0022274.1_g000001 Rmu_sc0023644.1_g000005 Rmu_sc0024657.1_g000001 Rmu_sc0024721.1_g000003 Rmu_sc0025790.1_g000001 Rmu_sc0026866.1_g000001 Rmu_sc0027363.1_g000002 Rmu_sc0027485.1_g000001 Rmu_sc0028394.1_g000001 Rmu_sc0033121.1_g000002 Rmu_sc0033838.1_g000001 Rmu_sc0035536.1_g000001 Rmu_sc0036296.1_g000001 Rmu_sc0036297.1_g000001 Rmu_sc0036298.1_g000001 Rmu_sc0036797.1_g000001 Rmu_sc0037010.1_g000001 Rmu_sc0037444.1_g000002 Rmu_sc0039012.1_g000002 Rmu_sc0040172.1_g000001 Rmu_sc0042083.1_g000001 Rmu_ssc0000018.1_g000001 Rmu_ssc0000171.1_g000032 Rmu_ssc0000213.1_g000064 Rmu_ssc0000213.1_g000096 Rmu_ssc0000262.1_g000017 Rmu_ssc0000295.1_g000036 Rmu_ssc0000343.1_g000008 Rmu_ssc0000398.1_g000003 Rmu_ssc0000400.1_g000085 Rmu_ssc0000438.1_g000007 Rmu_ssc0000478.1_g000003
rosa_roxburghii	Rroxscaffold_166G00440710 Rroxscaffold_166G00440720 Rroxscaffold_174G00435300 Rroxscaffold_174G00435310 Rroxscaffold_177G00434290 Rroxscaffold_177G00434300 Rroxscaffold_177G00434310 Rroxscaffold_178G00437310 Rroxscaffold_1G00002500 Rroxscaffold_1G00004730 Rroxscaffold_1G00008660 Rroxscaffold_1G00008670 Rroxscaffold_1G00008680 Rroxscaffold_1G00008690 Rroxscaffold_1G00010260 Rroxscaffold_1G00015670 Rroxscaffold_1G00021140 Rroxscaffold_1G00024380 Rroxscaffold_1G00032420 Rroxscaffold_1G00050600 Rroxscaffold_1G00050610 Rroxscaffold_1G00055970 Rroxscaffold_1G00066220 Rroxscaffold_2G00085370 Rroxscaffold_2G00092350 Rroxscaffold_2G00092360 Rroxscaffold_2G00093350 Rroxscaffold_2G00097090 Rroxscaffold_2G00108040 Rroxscaffold_2G00109970 Rroxscaffold_2G00111470 Rroxscaffold_2G00111480 Rroxscaffold_2G00112000 Rroxscaffold_2G00112060 Rroxscaffold_2G00129160 Rroxscaffold_2G00132340 Rroxscaffold_2G00136720 Rroxscaffold_2G00152910 Rroxscaffold_3G00223160 Rroxscaffold_3G00223170 Rroxscaffold_3G00223520 Rroxscaffold_3G00230980 Rroxscaffold_3G00245030 Rroxscaffold_3G00259050 Rroxscaffold_3G00259060 Rroxscaffold_3G00259070 Rroxscaffold_3G00267470 Rroxscaffold_3G00272040 Rroxscaffold_3G00272440 Rroxscaffold_3G00272450 Rroxscaffold_4G00285860 Rroxscaffold_4G00285870 Rroxscaffold_4G00294380 Rroxscaffold_4G00294390 Rroxscaffold_4G00297890 Rroxscaffold_4G00298150 Rroxscaffold_4G00303090 Rroxscaffold_4G00306480 Rroxscaffold_4G00306680 Rroxscaffold_4G00310490 Rroxscaffold_4G00310630 Rroxscaffold_4G00310670 Rroxscaffold_4G00310680 Rroxscaffold_4G00310690 Rroxscaffold_4G00317930 Rroxscaffold_4G00320190 Rroxscaffold_4G00323370 Rroxscaffold_4G00323380 Rroxscaffold_4G00324200 Rroxscaffold_4G00331220 Rroxscaffold_5G00339230 Rroxscaffold_5G00341260 Rroxscaffold_5G00343120 Rroxscaffold_5G00345440 Rroxscaffold_5G00345450 Rroxscaffold_5G00353190 Rroxscaffold_5G00353420 Rroxscaffold_5G00356560 Rroxscaffold_5G00359790 Rroxscaffold_5G00381710 Rroxscaffold_5G00381720 Rroxscaffold_5G00386250 Rroxscaffold_5G00387520 Rroxscaffold_6G00390180 Rroxscaffold_6G00392810 Rroxscaffold_6G00401230 Rroxscaffold_6G00402640 Rroxscaffold_6G00405640 Rroxscaffold_6G00405650 Rroxscaffold_6G00405850 Rroxscaffold_6G00405860 Rroxscaffold_6G00412020 Rroxscaffold_6G00415690 Rroxscaffold_6G00415700 Rroxscaffold_7G00168110 Rroxscaffold_7G00178950 Rroxscaffold_7G00178960 Rroxscaffold_7G00193670 Rroxscaffold_7G00203020 Rroxscaffold_7G00203340 Rroxscaffold_7G00203550 Rroxscaffold_7G00207220 Rroxscaffold_7G00207250 Rroxscaffold_7G00207430 Rroxscaffold_7G00209310 Rroxscaffold_7G00211530 Rroxscaffold_7G00211540 Rroxscaffold_7G00214160 Rroxscaffold_7G00216040 Rroxscaffold_7G00216800
rosa_samantha	Rh1AG276800 Rh1CG260400 Rh3CG366700
rosa_wichuraiana	Rw1G001440 Rw3G029210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	98
Acc36I	ACCTGC	1 cut(s)	98
AccB7I	CCANNNNNTGG	2 cut(s)	283, 1006
AccBSI	CCGCTC	1 cut(s)	995
AccII	CGCG	2 cut(s)	116, 179
AciI	CCGC	4 cut(s)	116, 696, 876, 993
AclWI	GGATC	2 cut(s)	533, 761
AcoI	YGGCCR	1 cut(s)	1270
AcsI	RAATTY	2 cut(s)	743, 821
AcuI	CTGAAG	1 cut(s)	318
AfaI	GTAC	2 cut(s)	815, 1265
AfiI	CCNNNNNNNGG	7 cut(s)	38, 39, 283, 511, 1006, 1025, 1099
AgeI	ACCGGT	1 cut(s)	715
AgsI	TTSAA	6 cut(s)	167, 269, 335, 917, 1238, 1285
AjiI	CACGTC	1 cut(s)	660
AjnI	CCWGG	6 cut(s)	474, 504, 684, 849, 1024, 1092
AjuI	GAANNNNNNNTTGG	2 cut(s)	515, 547
AluBI	AGCT	7 cut(s)	292, 329, 665, 977, 1132, 1178, 1278
AluI	AGCT	7 cut(s)	292, 329, 665, 977, 1132, 1178, 1278
Alw21I	GWGCWC	2 cut(s)	346, 1280
Alw26I	GTCTC	1 cut(s)	296
AlwI	GGATC	2 cut(s)	533, 761
Ama87I	CYCGRG	3 cut(s)	207, 606, 933
AoxI	GGCC	6 cut(s)	126, 285, 399, 936, 1086, 1270
ApaI	GGGCCC	1 cut(s)	1090
ApeKI	GCWGC	2 cut(s)	256, 624
ApoI	RAATTY	2 cut(s)	743, 821
AsiGI	ACCGGT	1 cut(s)	715
AspA2I	CCTAGG	1 cut(s)	1082
AspLEI	GCGC	3 cut(s)	116, 261, 282
AspS9I	GGNCC	6 cut(s)	286, 502, 936, 1028, 1086, 1087
AsuC2I	CCSGG	2 cut(s)	934, 935
AsuNHI	GCTAGC	1 cut(s)	968
AvaI	CYCGRG	3 cut(s)	207, 606, 933
AvaII	GGWCC	2 cut(s)	502, 1028
AvrII	CCTAGG	1 cut(s)	1082
BaeGI	GKGCMC	1 cut(s)	1090
BalI	TGGCCA	1 cut(s)	1272
BanII	GRGCYC	2 cut(s)	1090, 1280
BbsI	GAAGAC	1 cut(s)	620
Bbv12I	GWGCWC	2 cut(s)	346, 1280
BbvI	GCAGC	2 cut(s)	268, 636
BccI	CCATC	3 cut(s)	152, 410, 791
BceAI	ACGGC	2 cut(s)	632, 1136
BcgI	CGANNNNNNTGC	2 cut(s)	977, 1011
BciT130I	CCWGG	6 cut(s)	476, 506, 686, 851, 1026, 1094
BclI	TGATCA	2 cut(s)	367, 1065
BcnI	CCSGG	2 cut(s)	934, 935
BcoDI	GTCTC	1 cut(s)	296
BfaI	CTAG	4 cut(s)	306, 351, 969, 1083
BfmI	CTRYAG	2 cut(s)	105, 642
BfuAI	ACCTGC	1 cut(s)	98
BisI	GCNGC	3 cut(s)	117, 257, 625
BlnI	CCTAGG	1 cut(s)	1082
BlsI	GCNGC	3 cut(s)	118, 258, 626
Bme1390I	CCNGG	8 cut(s)	476, 506, 686, 851, 934, 935, 1026, 1094
Bme18I	GGWCC	2 cut(s)	502, 1028
BmeT110I	CYCGRG	3 cut(s)	207, 606, 933
BmgBI	CACGTC	1 cut(s)	660
BmgT120I	GGNCC	6 cut(s)	286, 502, 936, 1028, 1086, 1087
BmiI	GGNNCC	2 cut(s)	1088, 1110
BmrFI	CCNGG	8 cut(s)	476, 506, 686, 851, 934, 935, 1026, 1094
BmrI	ACTGGG	1 cut(s)	48
BmsI	GCATC	2 cut(s)	1034, 1240
BmtI	GCTAGC	1 cut(s)	972
BmuI	ACTGGG	1 cut(s)	48
BpiI	GAAGAC	1 cut(s)	620
Bpu10I	CCTNAGC	1 cut(s)	510
BpuMI	CCSGG	2 cut(s)	934, 935
BsaJI	CCNNGG	6 cut(s)	474, 684, 932, 933, 946, 1082
BsaWI	WCCGGW	2 cut(s)	715, 769
BsaXI	ACNNNNNCTCC	6 cut(s)	1003, 1033, 1167, 1193, 1197, 1223
Bsc4I	CCNNNNNNNGG	7 cut(s)	38, 39, 283, 511, 1006, 1025, 1099
Bse118I	RCCGGY	1 cut(s)	715
Bse1I	ACTGG	1 cut(s)	43
Bse3DI	GCAATG	1 cut(s)	457
BseBI	CCWGG	6 cut(s)	476, 506, 686, 851, 1026, 1094
BseDI	CCNNGG	6 cut(s)	474, 684, 932, 933, 946, 1082
BseGI	GGATG	4 cut(s)	144, 895, 1015, 1102
BseLI	CCNNNNNNNGG	7 cut(s)	38, 39, 283, 511, 1006, 1025, 1099
BseMI	GCAATG	1 cut(s)	457
BseNI	ACTGG	1 cut(s)	43
BseRI	GAGGAG	2 cut(s)	1011, 1073
BseSI	GKGCMC	1 cut(s)	1090
BseXI	GCAGC	2 cut(s)	268, 636
BseYI	CCCAGC	1 cut(s)	288
Bsh1236I	CGCG	2 cut(s)	116, 179
Bsh1285I	CGRYCG	2 cut(s)	720, 1149
BshFI	GGCC	6 cut(s)	128, 287, 401, 938, 1088, 1272
BshTI	ACCGGT	1 cut(s)	715
BsiEI	CGRYCG	2 cut(s)	720, 1149
BsiHKAI	GWGCWC	2 cut(s)	346, 1280
BsiHKCI	CYCGRG	3 cut(s)	207, 606, 933
BsiSI	CCGG	4 cut(s)	716, 770, 934, 1173
BslI	CCNNNNNNNGG	7 cut(s)	38, 39, 283, 511, 1006, 1025, 1099
BsmAI	GTCTC	1 cut(s)	296
BsmI	GAATGC	1 cut(s)	607
BsnI	GGCC	6 cut(s)	128, 287, 401, 938, 1088, 1272
BsoBI	CYCGRG	3 cut(s)	207, 606, 933
Bsp120I	GGGCCC	1 cut(s)	1086
Bsp1286I	GDGCHC	3 cut(s)	346, 1090, 1280
Bsp143I	GATC	7 cut(s)	180, 367, 538, 766, 864, 1065, 1146
Bsp68I	TCGCGA	1 cut(s)	179
BspACI	CCGC	4 cut(s)	116, 696, 876, 993
BspANI	GGCC	6 cut(s)	128, 287, 401, 938, 1088, 1272
BspFNI	CGCG	2 cut(s)	116, 179
BspHI	TCATGA	1 cut(s)	405
BspLI	GGNNCC	2 cut(s)	1088, 1110
BspMAI	CTGCAG	1 cut(s)	109
BspMI	ACCTGC	1 cut(s)	98
BspOI	GCTAGC	1 cut(s)	972
BspPI	GGATC	2 cut(s)	533, 761
BsrBI	CCGCTC	1 cut(s)	995
BsrDI	GCAATG	1 cut(s)	457
BsrFI	RCCGGY	1 cut(s)	715
BsrI	ACTGG	1 cut(s)	43
BssAI	RCCGGY	1 cut(s)	715
BssECI	CCNNGG	6 cut(s)	474, 684, 932, 933, 946, 1082
BssMI	GATC	7 cut(s)	180, 367, 538, 766, 864, 1065, 1146
BssT1I	CCWWGG	2 cut(s)	946, 1082
Bst2UI	CCWGG	6 cut(s)	476, 506, 686, 851, 1026, 1094
Bst4CI	ACNGT	6 cut(s)	174, 427, 631, 921, 1006, 1189
Bst6I	CTCTTC	4 cut(s)	294, 450, 450, 1044
BstC8I	GCNNGC	7 cut(s)	70, 294, 419, 856, 903, 970, 997
BstDEI	CTNAG	4 cut(s)	246, 510, 553, 666
BstF5I	GGATG	4 cut(s)	144, 895, 1015, 1102
BstFNI	CGCG	2 cut(s)	116, 179
BstHHI	GCGC	3 cut(s)	116, 261, 282
BstKTI	GATC	7 cut(s)	183, 370, 541, 769, 867, 1068, 1149
BstMAI	GTCTC	1 cut(s)	296
BstMBI	GATC	7 cut(s)	180, 367, 538, 766, 864, 1065, 1146
BstMCI	CGRYCG	2 cut(s)	720, 1149
BstMWI	GCNNNNNNNGC	8 cut(s)	113, 125, 293, 385, 653, 662, 974, 1148
BstNI	CCWGG	6 cut(s)	476, 506, 686, 851, 1026, 1094
BstSCI	CCNGG	8 cut(s)	474, 504, 684, 849, 932, 933, 1024, 1092
BstSFI	CTRYAG	2 cut(s)	105, 642
BstSLI	GKGCMC	1 cut(s)	1090
BstUI	CGCG	2 cut(s)	116, 179
BstV1I	GCAGC	2 cut(s)	268, 636
BstV2I	GAAGAC	1 cut(s)	620
BstX2I	RGATCY	1 cut(s)	538
BstYI	RGATCY	1 cut(s)	538
BsuRI	GGCC	6 cut(s)	128, 287, 401, 938, 1088, 1272
BtgZI	GCGATG	3 cut(s)	87, 810, 1228
BtrI	CACGTC	1 cut(s)	660
BtsCI	GGATG	4 cut(s)	144, 895, 1015, 1102
BtsIMutI	CAGTG	3 cut(s)	423, 596, 1185
BtuMI	TCGCGA	1 cut(s)	179
BveI	ACCTGC	1 cut(s)	98
Cac8I	GCNNGC	7 cut(s)	70, 294, 419, 856, 903, 970, 997
CciI	TCATGA	1 cut(s)	405
CfoI	GCGC	3 cut(s)	116, 261, 282
Cfr10I	RCCGGY	1 cut(s)	715
Cfr13I	GGNCC	6 cut(s)	286, 502, 936, 1028, 1086, 1087
Cfr9I	CCCGGG	1 cut(s)	933
Csp6I	GTAC	2 cut(s)	814, 1264
CspAI	ACCGGT	1 cut(s)	715
CviAII	CATG	7 cut(s)	187, 283, 394, 406, 484, 1126, 1229
CviQI	GTAC	2 cut(s)	814, 1264
DdeI	CTNAG	4 cut(s)	246, 510, 553, 666
DpnI	GATC	7 cut(s)	182, 369, 540, 768, 866, 1067, 1148
DpnII	GATC	7 cut(s)	180, 367, 538, 766, 864, 1065, 1146
EaeI	YGGCCR	1 cut(s)	1270
Eam1104I	CTCTTC	4 cut(s)	294, 450, 450, 1044
EarI	CTCTTC	4 cut(s)	294, 450, 450, 1044
Ecl136II	GAGCTC	1 cut(s)	1278
Eco130I	CCWWGG	2 cut(s)	946, 1082
Eco147I	AGGCCT	1 cut(s)	128
Eco24I	GRGCYC	2 cut(s)	1090, 1280
Eco32I	GATATC	1 cut(s)	196
Eco47I	GGWCC	2 cut(s)	502, 1028
Eco53kI	GAGCTC	1 cut(s)	1278
Eco57I	CTGAAG	1 cut(s)	318
Eco88I	CYCGRG	3 cut(s)	207, 606, 933
EcoICRI	GAGCTC	1 cut(s)	1278
EcoO109I	RGGNCCY	1 cut(s)	1086
EcoRI	GAATTC	1 cut(s)	821
EcoRII	CCWGG	6 cut(s)	474, 504, 684, 849, 1024, 1092
EcoRV	GATATC	1 cut(s)	196
EcoT14I	CCWWGG	2 cut(s)	946, 1082
EcoT22I	ATGCAT	1 cut(s)	489
EcoT38I	GRGCYC	2 cut(s)	1090, 1280
ErhI	CCWWGG	2 cut(s)	946, 1082
FaeI	CATG	7 cut(s)	190, 286, 397, 409, 487, 1129, 1232
FatI	CATG	7 cut(s)	186, 282, 393, 405, 483, 1125, 1228
FbaI	TGATCA	2 cut(s)	367, 1065
Fnu4HI	GCNGC	3 cut(s)	117, 257, 625
FokI	GGATG	4 cut(s)	131, 902, 1002, 1109
FriOI	GRGCYC	2 cut(s)	1090, 1280
Fsp4HI	GCNGC	3 cut(s)	117, 257, 625
FspBI	CTAG	4 cut(s)	306, 351, 969, 1083
GlaI	GCGC	3 cut(s)	115, 260, 281
GluI	GCNGC	3 cut(s)	117, 257, 625
GsaI	CCCAGC	1 cut(s)	292
HaeIII	GGCC	6 cut(s)	128, 287, 401, 938, 1088, 1272
HapII	CCGG	4 cut(s)	716, 770, 934, 1173
HhaI	GCGC	3 cut(s)	116, 261, 282
Hin1II	CATG	7 cut(s)	190, 286, 397, 409, 487, 1129, 1232
Hin6I	GCGC	3 cut(s)	114, 259, 280
HinP1I	GCGC	3 cut(s)	114, 259, 280
HincII	GTYRAC	2 cut(s)	6, 26
HindII	GTYRAC	2 cut(s)	6, 26
HinfI	GANTC	3 cut(s)	335, 458, 579
HpaII	CCGG	4 cut(s)	716, 770, 934, 1173
Hpy166II	GTNNAC	3 cut(s)	6, 26, 924
Hpy188I	TCNGA	4 cut(s)	253, 741, 864, 1113
Hpy8I	GTNNAC	3 cut(s)	6, 26, 924
Hpy99I	CGWCG	3 cut(s)	1147, 1157, 1170
HpyAV	CCTTC	4 cut(s)	139, 648, 947, 1291
HpyCH4III	ACNGT	6 cut(s)	174, 427, 631, 921, 1006, 1189
HpyCH4IV	ACGT	1 cut(s)	659
HpyCH4V	TGCA	5 cut(s)	95, 107, 379, 487, 988
HpyF10VI	GCNNNNNNNGC	8 cut(s)	113, 125, 293, 385, 653, 662, 974, 1148
HpyF3I	CTNAG	4 cut(s)	246, 510, 553, 666
HpySE526I	ACGT	1 cut(s)	659
Hsp92II	CATG	7 cut(s)	190, 286, 397, 409, 487, 1129, 1232
HspAI	GCGC	3 cut(s)	114, 259, 280
Ksp22I	TGATCA	2 cut(s)	367, 1065
Kzo9I	GATC	7 cut(s)	180, 367, 538, 766, 864, 1065, 1146
LmnI	GCTCC	4 cut(s)	155, 1129, 1175, 1283
Lsp1109I	GCAGC	2 cut(s)	268, 636
LweI	GCATC	2 cut(s)	1034, 1240
MaeI	CTAG	4 cut(s)	306, 351, 969, 1083
MaeII	ACGT	1 cut(s)	659
MaeIII	GTNAC	6 cut(s)	34, 52, 631, 649, 892, 1183
MalI	GATC	7 cut(s)	182, 369, 540, 768, 866, 1067, 1148
MbiI	CCGCTC	1 cut(s)	995
MboI	GATC	7 cut(s)	180, 367, 538, 766, 864, 1065, 1146
MboII	GAAGA	6 cut(s)	311, 437, 467, 625, 830, 1061
MflI	RGATCY	1 cut(s)	538
MhlI	GDGCHC	3 cut(s)	346, 1090, 1280
MlsI	TGGCCA	1 cut(s)	1272
MluCI	AATT	6 cut(s)	434, 497, 690, 743, 821, 832
MluNI	TGGCCA	1 cut(s)	1272
MlyI	GAGTC	1 cut(s)	467
Mox20I	TGGCCA	1 cut(s)	1272
Mph1103I	ATGCAT	1 cut(s)	489
MscI	TGGCCA	1 cut(s)	1272
MseI	TTAA	1 cut(s)	1299
MslI	CAYNNNNRTG	1 cut(s)	1095
Msp20I	TGGCCA	1 cut(s)	1272
MspI	CCGG	4 cut(s)	716, 770, 934, 1173
MspR9I	CCNGG	8 cut(s)	476, 506, 686, 851, 934, 935, 1026, 1094
Mva1269I	GAATGC	1 cut(s)	607
MvaI	CCWGG	6 cut(s)	476, 506, 686, 851, 1026, 1094
MvnI	CGCG	2 cut(s)	116, 179
MwoI	GCNNNNNNNGC	8 cut(s)	113, 125, 293, 385, 653, 662, 974, 1148
NciI	CCSGG	2 cut(s)	934, 935
NdeII	GATC	7 cut(s)	180, 367, 538, 766, 864, 1065, 1146
NheI	GCTAGC	1 cut(s)	968
NlaIII	CATG	7 cut(s)	190, 286, 397, 409, 487, 1129, 1232
NlaIV	GGNNCC	2 cut(s)	1088, 1110
NmuCI	GTSAC	3 cut(s)	52, 892, 1183
NruI	TCGCGA	1 cut(s)	179
NsiI	ATGCAT	1 cut(s)	489
PaeR7I	CTCGAG	1 cut(s)	207
PagI	TCATGA	1 cut(s)	405
PaqCI	CACCTGC	1 cut(s)	98
PceI	AGGCCT	1 cut(s)	128
PctI	GAATGC	1 cut(s)	607
PfeI	GAWTC	2 cut(s)	335, 579
PflMI	CCANNNNNTGG	2 cut(s)	283, 1006
PinAI	ACCGGT	1 cut(s)	715
PkrI	GCNGC	3 cut(s)	118, 258, 626
Ple19I	CGATCG	1 cut(s)	1149
PleI	GAGTC	1 cut(s)	466
PpsI	GAGTC	1 cut(s)	466
Psp124BI	GAGCTC	1 cut(s)	1280
Psp6I	CCWGG	6 cut(s)	474, 504, 684, 849, 1024, 1092
PspFI	CCCAGC	1 cut(s)	288
PspGI	CCWGG	6 cut(s)	474, 504, 684, 849, 1024, 1092
PspN4I	GGNNCC	2 cut(s)	1088, 1110
PspOMI	GGGCCC	1 cut(s)	1086
PspPI	GGNCC	6 cut(s)	286, 502, 936, 1028, 1086, 1087
PstI	CTGCAG	1 cut(s)	109
PsuI	RGATCY	1 cut(s)	538
PvuI	CGATCG	1 cut(s)	1149
RruI	TCGCGA	1 cut(s)	179
RsaI	GTAC	2 cut(s)	815, 1265
RsaNI	GTAC	2 cut(s)	814, 1264
RseI	CAYNNNNRTG	1 cut(s)	1095
SacI	GAGCTC	1 cut(s)	1280
SaqAI	TTAA	1 cut(s)	1299
SatI	GCNGC	3 cut(s)	117, 257, 625
Sau3AI	GATC	7 cut(s)	180, 367, 538, 766, 864, 1065, 1146
Sau96I	GGNCC	6 cut(s)	286, 502, 936, 1028, 1086, 1087
SchI	GAGTC	1 cut(s)	467
ScrFI	CCNGG	8 cut(s)	476, 506, 686, 851, 934, 935, 1026, 1094
SduI	GDGCHC	3 cut(s)	346, 1090, 1280
SfaNI	GCATC	2 cut(s)	1034, 1240
SfcI	CTRYAG	2 cut(s)	105, 642
Sfr274I	CTCGAG	1 cut(s)	207
SinI	GGWCC	2 cut(s)	502, 1028
SlaI	CTCGAG	1 cut(s)	207
SmaI	CCCGGG	1 cut(s)	935
SmiMI	CAYNNNNRTG	1 cut(s)	1095
SmlI	CTYRAG	1 cut(s)	207
SmoI	CTYRAG	1 cut(s)	207
Sse9I	AATT	6 cut(s)	434, 497, 690, 743, 821, 832
SseBI	AGGCCT	1 cut(s)	128
SsiI	CCGC	4 cut(s)	116, 696, 876, 993
SspMI	CTAG	4 cut(s)	306, 351, 969, 1083
SstI	GAGCTC	1 cut(s)	1280
StuI	AGGCCT	1 cut(s)	128
StyD4I	CCNGG	8 cut(s)	474, 504, 684, 849, 932, 933, 1024, 1092
StyI	CCWWGG	2 cut(s)	946, 1082
TaaI	ACNGT	6 cut(s)	174, 427, 631, 921, 1006, 1189
TaiI	ACGT	1 cut(s)	662
TaqI	TCGA	3 cut(s)	198, 208, 1155
TasI	AATT	6 cut(s)	434, 497, 690, 743, 821, 832
TauI	GCSGC	1 cut(s)	119
TfiI	GAWTC	2 cut(s)	335, 579
Tru1I	TTAA	1 cut(s)	1299
Tru9I	TTAA	1 cut(s)	1299
TscAI	CASTG	3 cut(s)	430, 603, 1192
TseFI	GTSAC	3 cut(s)	52, 892, 1183
TseI	GCWGC	2 cut(s)	256, 624
Tsp45I	GTSAC	3 cut(s)	52, 892, 1183
TspDTI	ATGAA	3 cut(s)	422, 468, 536
TspMI	CCCGGG	1 cut(s)	933
TspRI	CASTG	3 cut(s)	430, 603, 1192
Van91I	CCANNNNNTGG	2 cut(s)	283, 1006
VpaK11BI	GGWCC	2 cut(s)	502, 1028
XapI	RAATTY	2 cut(s)	743, 821
XbaI	TCTAGA	1 cut(s)	350
XhoI	CTCGAG	1 cut(s)	207
XmaI	CCCGGG	1 cut(s)	933
XmaJI	CCTAGG	1 cut(s)	1082
XspI	CTAG	4 cut(s)	306, 351, 969, 1083
Zsp2I	ATGCAT	1 cut(s)	489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.