Rmu_sc0040172.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0040172.1
OG0000057
Physical Location & Seq
Forward (+)
1 .. 2212
2212 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0040172.1_g000001.1.cds

Sequence Viewer

Length: 1584 bp
cctttccggatcaacccctctcattctcttaccggtgaccacactccagtcccagaatcctcaggagccgactatcagtgccaccaaaccctctgtcaacgtgtttcggtcctagtcttctcgggagccgactgtagtactgcgaccacaacggttacggaaccagccaagcaaggaagcttagcaaaagtcttcaccacgaggcataaagaattcctcgacgaaattggtgttctcctcgttcacaatcgctcaaaagaagtcaggtcaagggacacccccgacgaccgcacccgaacacgtttcttcgccatcgcagccattgagaagtcaagtgcaaacccttatcaaaaggtttacgttaactgcccgaaacacaagatctccagttacagaccgcactcgcgtgcagactgtagtggtctttctgaagaactagtaatccagagattttccctcaatccgccatcgaccgagatgacaaccgaacaaggaggaaatcgacagcctactactgaaggcgagaaagttcctgccgcccagcctaatgaggctggcaatgcgtttagcatcactcaggtagccgcgagcgcggttacaactattgactttatgcctattcccgttccagagaatgcgaccataaaagagcggcttaatatccttcaacagaattctgccgcataccatgagaagatggaaaaagcccttgcggaggaccgccgacggcttgatgagttcactatctcggacaagaggcttgagctaggggcacaacaaacacaaggacaattggatggcatgaaccaaaaaatgcaaaagaaccacgaagagttgttggccgcaagtaaacacatcgccacagacgttgcggctatcaaaaatgagggatccaatctagcgacccaagttgccatgcaaagagttgacttagacacggctaaagaggttctgactaaagctctgggagatcctaatgccatccttggttcgcttggccaacccacagggtcaagcaagtacataccgcctaatgctagagaaaaagctagcggcggcaatacagccacatccgctctaactacaactgccacatcagtcagaggtaaagagactactctggtaaccggtggaaagaacagccccaccaacggagttgaatacgtgcaccaggaccagccttcagcgagccaacaggttggaagtccagcaatgatcaccgcggccaaaaagggtcagccaacagcgggttttacgtcacagacgtcgacccaacacaaaatgacccatggaggcagcgtatctttggttaatcaggcttcacaggcgccaccgctgatctggccagttgatgatatagtggttcacccacttcctctttatccaagatatgtaaagagagaggaggtaaaagcaatgatcagggccgcgaaccagaggcctaacctggaggaggcctaccaggggcccttcccactgcatattacacagacaccttatcctagaggatataagaacattactttctctactttctcgggagaggaagtcgaaagtgtcgcagctcatttggtcaggttttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

527

Amino Acids

57.3

Weight (kDa)

8.29

Isoelectric Point (pI)

41.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000057)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00341 FvH4_2g18201 FvH4_2g24491 FvH4_2g24511 FvH4_3g22961 FvH4_3g33532 FvH4_3g33534 FvH4_4g05275 FvH4_4g12372 FvH4_5g20143 FvH4_7g12392
pyrus_communis pycom12g16120
rosa_chinensis RchiOBHm_Chr5g0023531 RchiOBHm_Chr6g0271201
rosa_laevigata RLG00000030639
rosa_multiflora Rmu_co8016136.1_g000001 Rmu_co8027180.1_g000001 Rmu_co8041016.1_g000001 Rmu_co8052812.1_g000001 Rmu_co8152468.1_g000001 Rmu_co8165796.1_g000001 Rmu_co8170214.1_g000001 Rmu_co8227433.1_g000001 Rmu_co8241379.1_g000001 Rmu_co8254305.1_g000001 Rmu_co8258647.1_g000001 Rmu_co8265535.1_g000002 Rmu_co8276845.1_g000001 Rmu_co8296303.1_g000001 Rmu_co8304827.1_g000001 Rmu_co8308345.1_g000001 Rmu_co8320493.1_g000002 Rmu_co8326955.1_g000001 Rmu_co8331007.1_g000001 Rmu_co8335625.1_g000001 Rmu_co8354465.1_g000001 Rmu_co8360201.1_g000001 Rmu_co8362075.1_g000002 Rmu_co8362991.1_g000001 Rmu_co8364567.1_g000001 Rmu_co8365273.1_g000001 Rmu_co8387267.1_g000001 Rmu_co8395251.1_g000002 Rmu_co8396677.1_g000001 Rmu_co8457659.1_g000001 Rmu_co8478117.1_g000001 Rmu_co8487163.1_g000001 Rmu_co8498169.1_g000001 Rmu_sc0000029.1_g000022 Rmu_sc0000063.1_g000007 Rmu_sc0000112.1_g000020 Rmu_sc0000146.1_g000006 Rmu_sc0000245.1_g000015 Rmu_sc0000276.1_g000036 Rmu_sc0000334.1_g000033 Rmu_sc0000334.1_g000034 Rmu_sc0000434.1_g000019 Rmu_sc0000441.1_g000118 Rmu_sc0000533.1_g000054 Rmu_sc0000533.1_g000055 Rmu_sc0000595.1_g000041 Rmu_sc0000663.1_g000019 Rmu_sc0000673.1_g000002 Rmu_sc0000698.1_g000102 Rmu_sc0000745.1_g000007 Rmu_sc0000768.1_g000018 Rmu_sc0000811.1_g000012 Rmu_sc0000826.1_g000009 Rmu_sc0000826.1_g000011 Rmu_sc0001051.1_g000042 Rmu_sc0001051.1_g000043 Rmu_sc0001148.1_g000014 Rmu_sc0001198.1_g000021 Rmu_sc0001227.1_g000008 Rmu_sc0001250.1_g000028 Rmu_sc0001395.1_g000019 Rmu_sc0001395.1_g000020 Rmu_sc0001396.1_g000002 Rmu_sc0001424.1_g000007 Rmu_sc0001455.1_g000025 Rmu_sc0001455.1_g000029 Rmu_sc0001499.1_g000036 Rmu_sc0001539.1_g000001 Rmu_sc0001562.1_g000027 Rmu_sc0001563.1_g000024 Rmu_sc0001719.1_g000022 Rmu_sc0001796.1_g000008 Rmu_sc0001884.1_g000022 Rmu_sc0001903.1_g000018 Rmu_sc0002041.1_g000012 Rmu_sc0002096.1_g000002 Rmu_sc0002126.1_g000027 Rmu_sc0002181.1_g000010 Rmu_sc0002259.1_g000004 Rmu_sc0002279.1_g000018 Rmu_sc0002312.1_g000060 Rmu_sc0002383.1_g000011 Rmu_sc0002401.1_g000012 Rmu_sc0002509.1_g000028 Rmu_sc0002569.1_g000008 Rmu_sc0002587.1_g000037 Rmu_sc0002665.1_g000006 Rmu_sc0002698.1_g000018 Rmu_sc0002724.1_g000002 Rmu_sc0002727.1_g000011 Rmu_sc0002927.1_g000055 Rmu_sc0002927.1_g000056 Rmu_sc0002943.1_g000009 Rmu_sc0002943.1_g000023 Rmu_sc0002998.1_g000001 Rmu_sc0003089.1_g000036 Rmu_sc0003127.1_g000022 Rmu_sc0003127.1_g000040 Rmu_sc0003207.1_g000010 Rmu_sc0003207.1_g000011 Rmu_sc0003275.1_g000034 Rmu_sc0003275.1_g000036 Rmu_sc0003337.1_g000047 Rmu_sc0003376.1_g000004 Rmu_sc0003522.1_g000024 Rmu_sc0003613.1_g000007 Rmu_sc0003708.1_g000026 Rmu_sc0003784.1_g000018 Rmu_sc0004079.1_g000005 Rmu_sc0004092.1_g000017 Rmu_sc0004168.1_g000058 Rmu_sc0004174.1_g000019 Rmu_sc0004199.1_g000049 Rmu_sc0004230.1_g000005 Rmu_sc0004283.1_g000021 Rmu_sc0004283.1_g000022 Rmu_sc0004314.1_g000017 Rmu_sc0004538.1_g000006 Rmu_sc0004542.1_g000011 Rmu_sc0004602.1_g000024 Rmu_sc0004641.1_g000006 Rmu_sc0004862.1_g000011 Rmu_sc0004941.1_g000043 Rmu_sc0005003.1_g000003 Rmu_sc0005112.1_g000018 Rmu_sc0005144.1_g000014 Rmu_sc0005266.1_g000014 Rmu_sc0005418.1_g000004 Rmu_sc0005627.1_g000006 Rmu_sc0005652.1_g000022 Rmu_sc0005747.1_g000032 Rmu_sc0005982.1_g000013 Rmu_sc0006050.1_g000017 Rmu_sc0006059.1_g000035 Rmu_sc0006128.1_g000002 Rmu_sc0006228.1_g000009 Rmu_sc0006243.1_g000009 Rmu_sc0006300.1_g000004 Rmu_sc0006463.1_g000007 Rmu_sc0006579.1_g000016 Rmu_sc0006595.1_g000011 Rmu_sc0006624.1_g000006 Rmu_sc0006624.1_g000007 Rmu_sc0006624.1_g000008 Rmu_sc0006674.1_g000025 Rmu_sc0006792.1_g000013 Rmu_sc0006872.1_g000022 Rmu_sc0006984.1_g000009 Rmu_sc0006984.1_g000010 Rmu_sc0006986.1_g000011 Rmu_sc0007016.1_g000001 Rmu_sc0007221.1_g000006 Rmu_sc0007222.1_g000005 Rmu_sc0007222.1_g000006 Rmu_sc0007251.1_g000001 Rmu_sc0007777.1_g000037 Rmu_sc0007826.1_g000018 Rmu_sc0008053.1_g000015 Rmu_sc0008502.1_g000006 Rmu_sc0008659.1_g000009 Rmu_sc0009045.1_g000009 Rmu_sc0009045.1_g000010 Rmu_sc0009060.1_g000012 Rmu_sc0009360.1_g000024 Rmu_sc0009431.1_g000001 Rmu_sc0009606.1_g000014 Rmu_sc0009774.1_g000001 Rmu_sc0009844.1_g000014 Rmu_sc0010313.1_g000001 Rmu_sc0010454.1_g000008 Rmu_sc0010543.1_g000016 Rmu_sc0010900.1_g000002 Rmu_sc0010925.1_g000009 Rmu_sc0011136.1_g000012 Rmu_sc0011534.1_g000004 Rmu_sc0011809.1_g000007 Rmu_sc0011917.1_g000005 Rmu_sc0012103.1_g000001 Rmu_sc0012287.1_g000001 Rmu_sc0012303.1_g000007 Rmu_sc0012344.1_g000009 Rmu_sc0012674.1_g000007 Rmu_sc0012686.1_g000001 Rmu_sc0012742.1_g000005 Rmu_sc0012746.1_g000026 Rmu_sc0012746.1_g000027 Rmu_sc0013419.1_g000008 Rmu_sc0014866.1_g000004 Rmu_sc0015325.1_g000011 Rmu_sc0015486.1_g000005 Rmu_sc0015651.1_g000002 Rmu_sc0015783.1_g000001 Rmu_sc0016387.1_g000009 Rmu_sc0017518.1_g000005 Rmu_sc0018480.1_g000001 Rmu_sc0018537.1_g000003 Rmu_sc0019200.1_g000002 Rmu_sc0019544.1_g000014 Rmu_sc0019544.1_g000015 Rmu_sc0019873.1_g000001 Rmu_sc0020392.1_g000001 Rmu_sc0020466.1_g000001 Rmu_sc0022008.1_g000001 Rmu_sc0022008.1_g000002 Rmu_sc0022274.1_g000001 Rmu_sc0023644.1_g000005 Rmu_sc0024657.1_g000001 Rmu_sc0024721.1_g000003 Rmu_sc0025790.1_g000001 Rmu_sc0026866.1_g000001 Rmu_sc0027363.1_g000002 Rmu_sc0027485.1_g000001 Rmu_sc0028394.1_g000001 Rmu_sc0033121.1_g000002 Rmu_sc0033838.1_g000001 Rmu_sc0035536.1_g000001 Rmu_sc0036296.1_g000001 Rmu_sc0036297.1_g000001 Rmu_sc0036298.1_g000001 Rmu_sc0036797.1_g000001 Rmu_sc0037010.1_g000001 Rmu_sc0037444.1_g000002 Rmu_sc0039012.1_g000002 Rmu_sc0040172.1_g000001 Rmu_sc0042083.1_g000001 Rmu_ssc0000018.1_g000001 Rmu_ssc0000171.1_g000032 Rmu_ssc0000213.1_g000064 Rmu_ssc0000213.1_g000096 Rmu_ssc0000262.1_g000017 Rmu_ssc0000295.1_g000036 Rmu_ssc0000343.1_g000008 Rmu_ssc0000398.1_g000003 Rmu_ssc0000400.1_g000085 Rmu_ssc0000438.1_g000007 Rmu_ssc0000478.1_g000003
rosa_roxburghii Rroxscaffold_166G00440710 Rroxscaffold_166G00440720 Rroxscaffold_174G00435300 Rroxscaffold_174G00435310 Rroxscaffold_177G00434290 Rroxscaffold_177G00434300 Rroxscaffold_177G00434310 Rroxscaffold_178G00437310 Rroxscaffold_1G00002500 Rroxscaffold_1G00004730 Rroxscaffold_1G00008660 Rroxscaffold_1G00008670 Rroxscaffold_1G00008680 Rroxscaffold_1G00008690 Rroxscaffold_1G00010260 Rroxscaffold_1G00015670 Rroxscaffold_1G00021140 Rroxscaffold_1G00024380 Rroxscaffold_1G00032420 Rroxscaffold_1G00050600 Rroxscaffold_1G00050610 Rroxscaffold_1G00055970 Rroxscaffold_1G00066220 Rroxscaffold_2G00085370 Rroxscaffold_2G00092350 Rroxscaffold_2G00092360 Rroxscaffold_2G00093350 Rroxscaffold_2G00097090 Rroxscaffold_2G00108040 Rroxscaffold_2G00109970 Rroxscaffold_2G00111470 Rroxscaffold_2G00111480 Rroxscaffold_2G00112000 Rroxscaffold_2G00112060 Rroxscaffold_2G00129160 Rroxscaffold_2G00132340 Rroxscaffold_2G00136720 Rroxscaffold_2G00152910 Rroxscaffold_3G00223160 Rroxscaffold_3G00223170 Rroxscaffold_3G00223520 Rroxscaffold_3G00230980 Rroxscaffold_3G00245030 Rroxscaffold_3G00259050 Rroxscaffold_3G00259060 Rroxscaffold_3G00259070 Rroxscaffold_3G00267470 Rroxscaffold_3G00272040 Rroxscaffold_3G00272440 Rroxscaffold_3G00272450 Rroxscaffold_4G00285860 Rroxscaffold_4G00285870 Rroxscaffold_4G00294380 Rroxscaffold_4G00294390 Rroxscaffold_4G00297890 Rroxscaffold_4G00298150 Rroxscaffold_4G00303090 Rroxscaffold_4G00306480 Rroxscaffold_4G00306680 Rroxscaffold_4G00310490 Rroxscaffold_4G00310630 Rroxscaffold_4G00310670 Rroxscaffold_4G00310680 Rroxscaffold_4G00310690 Rroxscaffold_4G00317930 Rroxscaffold_4G00320190 Rroxscaffold_4G00323370 Rroxscaffold_4G00323380 Rroxscaffold_4G00324200 Rroxscaffold_4G00331220 Rroxscaffold_5G00339230 Rroxscaffold_5G00341260 Rroxscaffold_5G00343120 Rroxscaffold_5G00345440 Rroxscaffold_5G00345450 Rroxscaffold_5G00353190 Rroxscaffold_5G00353420 Rroxscaffold_5G00356560 Rroxscaffold_5G00359790 Rroxscaffold_5G00381710 Rroxscaffold_5G00381720 Rroxscaffold_5G00386250 Rroxscaffold_5G00387520 Rroxscaffold_6G00390180 Rroxscaffold_6G00392810 Rroxscaffold_6G00401230 Rroxscaffold_6G00402640 Rroxscaffold_6G00405640 Rroxscaffold_6G00405650 Rroxscaffold_6G00405850 Rroxscaffold_6G00405860 Rroxscaffold_6G00412020 Rroxscaffold_6G00415690 Rroxscaffold_6G00415700 Rroxscaffold_7G00168110 Rroxscaffold_7G00178950 Rroxscaffold_7G00178960 Rroxscaffold_7G00193670 Rroxscaffold_7G00203020 Rroxscaffold_7G00203340 Rroxscaffold_7G00203550 Rroxscaffold_7G00207220 Rroxscaffold_7G00207250 Rroxscaffold_7G00207430 Rroxscaffold_7G00209310 Rroxscaffold_7G00211530 Rroxscaffold_7G00211540 Rroxscaffold_7G00214160 Rroxscaffold_7G00216040 Rroxscaffold_7G00216800
rosa_samantha Rh1AG276800 Rh1CG260400 Rh3CG366700
rosa_wichuraiana Rw1G001440 Rw3G029210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1268
AccB1I GGYRCC 1 cut(s) 1327
AccBSI CCGCTC 2 cut(s) 652, 1076
AccI GTMKAC 1 cut(s) 1268
AccII CGCG 5 cut(s) 406, 587, 593, 1223, 1430
AccIII TCCGGA 1 cut(s) 6
AclWI GGATC 4 cut(s) 17, 885, 898, 965
AcoI YGGCCR 4 cut(s) 840, 997, 1224, 1343
AcsI RAATTY 2 cut(s) 212, 673
AcuI CTGAAG 3 cut(s) 450, 537, 1167
AcyI GRCGYC 2 cut(s) 1265, 1328
AfaI GTAC 2 cut(s) 139, 1022
AfiI CCNNNNNNNGG 5 cut(s) 715, 1151, 1247, 1453, 1464
AflIII ACRYGT 2 cut(s) 100, 299
AgeI ACCGGT 2 cut(s) 32, 1127
AgsI TTSAA 2 cut(s) 668, 1160
AhlI ACTAGT 1 cut(s) 436
AjnI CCWGG 3 cut(s) 1170, 1446, 1461
AleI CACNNNNGTG 1 cut(s) 405
AloI GAACNNNNNNTCC 2 cut(s) 426, 458
AluBI AGCT 5 cut(s) 180, 766, 962, 1049, 1565
AluI AGCT 5 cut(s) 180, 766, 962, 1049, 1565
Alw21I GWGCWC 1 cut(s) 1170
Alw26I GTCTC 1 cut(s) 1106
Alw44I GTGCAC 1 cut(s) 1166
AlwI GGATC 4 cut(s) 17, 885, 898, 965
Ama87I CYCGRG 2 cut(s) 121, 1537
Aor13HI TCCGGA 1 cut(s) 6
AoxI GGCC 8 cut(s) 840, 997, 1224, 1343, 1425, 1439, 1455, 1466
ApaI GGGCCC 1 cut(s) 1470
ApaLI GTGCAC 1 cut(s) 1166
ApeKI GCWGC 3 cut(s) 317, 1296, 1562
ApoI RAATTY 2 cut(s) 212, 673
ArsI GACNNNNNNTTYG 2 cut(s) 79, 111
AsiGI ACCGGT 2 cut(s) 32, 1127
AspLEI GCGC 2 cut(s) 593, 1330
AspS9I GGNCC 6 cut(s) 109, 718, 1174, 1425, 1466, 1467
AsuHPI GGTGA 4 cut(s) 47, 187, 1210, 1358
AsuNHI GCTAGC 1 cut(s) 1049
AvaI CYCGRG 2 cut(s) 121, 1537
AvaII GGWCC 3 cut(s) 109, 718, 1174
AxyI CCTNAGG 1 cut(s) 61
BaeGI GKGCMC 3 cut(s) 775, 1170, 1470
BalI TGGCCA 2 cut(s) 999, 1345
BamHI GGATCC 1 cut(s) 890
BanI GGYRCC 1 cut(s) 1327
BanII GRGCYC 1 cut(s) 1470
BauI CACGAG 1 cut(s) 199
BbsI GAAGAC 2 cut(s) 109, 184
Bbv12I GWGCWC 1 cut(s) 1170
BbvI GCAGC 3 cut(s) 329, 1308, 1574
BccI CCATC 5 cut(s) 320, 475, 691, 791, 989
BceAI ACGGC 2 cut(s) 743, 954
BciT130I CCWGG 3 cut(s) 1172, 1448, 1463
BclI TGATCA 2 cut(s) 1215, 1419
BcoDI GTCTC 1 cut(s) 1106
BcuI ACTAGT 1 cut(s) 436
BfaI CTAG 7 cut(s) 113, 437, 767, 899, 1038, 1050, 1503
BfmI CTRYAG 2 cut(s) 133, 415
BfoI RGCGCY 1 cut(s) 1331
BglII AGATCT 1 cut(s) 381
BlpI GCTNAGC 1 cut(s) 181
BmcAI AGTACT 1 cut(s) 139
Bme1390I CCNGG 3 cut(s) 1172, 1448, 1463
Bme18I GGWCC 3 cut(s) 109, 718, 1174
BmeT110I CYCGRG 2 cut(s) 121, 1537
BmgT120I GGNCC 6 cut(s) 109, 718, 1174, 1425, 1466, 1467
BmiI GGNNCC 7 cut(s) 67, 127, 162, 892, 1329, 1467, 1468
BmrFI CCNGG 3 cut(s) 1172, 1448, 1463
BmsI GCATC 1 cut(s) 579
BmtI GCTAGC 1 cut(s) 1053
BpiI GAAGAC 2 cut(s) 109, 184
BpmI CTGGAG 3 cut(s) 30, 370, 1469
Bpu1102I GCTNAGC 1 cut(s) 181
BpuEI CTTGAG 1 cut(s) 782
BsaAI YACGTR 1 cut(s) 1165
BsaHI GRCGYC 2 cut(s) 1265, 1328
BsaJI CCNNGG 4 cut(s) 985, 1221, 1288, 1462
BsaWI WCCGGW 3 cut(s) 6, 32, 1127
BsaXI ACNNNNNCTCC 6 cut(s) 368, 398, 1284, 1314, 1533, 1563
Bsc4I CCNNNNNNNGG 5 cut(s) 715, 1151, 1247, 1453, 1464
Bse118I RCCGGY 2 cut(s) 32, 1127
Bse1I ACTGG 3 cut(s) 47, 387, 1346
Bse21I CCTNAGG 1 cut(s) 61
Bse3DI GCAATG 3 cut(s) 565, 1218, 1422
BseAI TCCGGA 1 cut(s) 6
BseBI CCWGG 3 cut(s) 1172, 1448, 1463
BseDI CCNNGG 4 cut(s) 985, 1221, 1288, 1462
BseGI GGATG 3 cut(s) 802, 981, 1070
BseLI CCNNNNNNNGG 5 cut(s) 715, 1151, 1247, 1453, 1464
BseMI GCAATG 3 cut(s) 565, 1218, 1422
BseMII CTCAG 2 cut(s) 75, 590
BseNI ACTGG 3 cut(s) 47, 387, 1346
BseRI GAGGAG 3 cut(s) 227, 1418, 1466
BseSI GKGCMC 3 cut(s) 775, 1170, 1470
BseXI GCAGC 3 cut(s) 329, 1308, 1574
BseYI CCCAGC 1 cut(s) 540
BsgI GTGCAG 1 cut(s) 429
Bsh1236I CGCG 5 cut(s) 406, 587, 593, 1223, 1430
Bsh1285I CGRYCG 2 cut(s) 289, 474
BshFI GGCC 8 cut(s) 842, 999, 1226, 1345, 1427, 1441, 1457, 1468
BshNI GGYRCC 1 cut(s) 1327
BshTI ACCGGT 2 cut(s) 32, 1127
BsiEI CGRYCG 2 cut(s) 289, 474
BsiHKAI GWGCWC 1 cut(s) 1170
BsiHKCI CYCGRG 2 cut(s) 121, 1537
BsiSI CCGG 3 cut(s) 7, 33, 1128
BslFI GGGAC 2 cut(s) 35, 287
BslI CCNNNNNNNGG 5 cut(s) 715, 1151, 1247, 1453, 1464
BsmAI GTCTC 1 cut(s) 1106
BsmFI GGGAC 2 cut(s) 35, 287
BsmI GAATGC 1 cut(s) 640
BsnI GGCC 8 cut(s) 842, 999, 1226, 1345, 1427, 1441, 1457, 1468
BsoBI CYCGRG 2 cut(s) 121, 1537
Bsp120I GGGCCC 1 cut(s) 1466
Bsp1286I GDGCHC 3 cut(s) 775, 1170, 1470
Bsp13I TCCGGA 1 cut(s) 6
Bsp143I GATC 7 cut(s) 9, 381, 890, 970, 1215, 1338, 1419
Bsp1720I GCTNAGC 1 cut(s) 181
Bsp19I CCATGG 1 cut(s) 1288
BspANI GGCC 8 cut(s) 842, 999, 1226, 1345, 1427, 1441, 1457, 1468
BspCNI CTCAG 2 cut(s) 74, 589
BspEI TCCGGA 1 cut(s) 6
BspFNI CGCG 5 cut(s) 406, 587, 593, 1223, 1430
BspLI GGNNCC 7 cut(s) 67, 127, 162, 892, 1329, 1467, 1468
BspOI GCTAGC 1 cut(s) 1053
BspPI GGATC 4 cut(s) 17, 885, 898, 965
BspT107I GGYRCC 1 cut(s) 1327
BsrBI CCGCTC 2 cut(s) 652, 1076
BsrDI GCAATG 3 cut(s) 565, 1218, 1422
BsrFI RCCGGY 2 cut(s) 32, 1127
BsrI ACTGG 3 cut(s) 47, 387, 1346
BssAI RCCGGY 2 cut(s) 32, 1127
BssECI CCNNGG 4 cut(s) 985, 1221, 1288, 1462
BssMI GATC 7 cut(s) 9, 381, 890, 970, 1215, 1338, 1419
BssNI GRCGYC 2 cut(s) 1265, 1328
BssSI CACGAG 1 cut(s) 199
BssT1I CCWWGG 2 cut(s) 985, 1288
Bst2BI CACGAG 1 cut(s) 199
Bst2UI CCWGG 3 cut(s) 1172, 1448, 1463
Bst4CI ACNGT 3 cut(s) 134, 154, 416
Bst6I CTCTTC 1 cut(s) 825
BstACI GRCGYC 2 cut(s) 1265, 1328
BstBAI YACGTR 1 cut(s) 1165
BstC8I GCNNGC 5 cut(s) 408, 556, 589, 1051, 1189
BstDEI CTNAG 4 cut(s) 61, 181, 576, 931
BstDSI CCRYGG 2 cut(s) 1221, 1288
BstEII GGTNACC 2 cut(s) 35, 1123
BstENI CCTNNNNNAGG 2 cut(s) 713, 1451
BstF5I GGATG 3 cut(s) 802, 981, 1070
BstFNI CGCG 5 cut(s) 406, 587, 593, 1223, 1430
BstH2I RGCGCY 1 cut(s) 1331
BstHHI GCGC 2 cut(s) 593, 1330
BstKTI GATC 7 cut(s) 12, 384, 893, 973, 1218, 1341, 1422
BstMAI GTCTC 1 cut(s) 1106
BstMBI GATC 7 cut(s) 9, 381, 890, 970, 1215, 1338, 1419
BstMCI CGRYCG 2 cut(s) 289, 474
BstMWI GCNNNNNNNGC 6 cut(s) 317, 560, 590, 1073, 1325, 1342
BstNI CCWGG 3 cut(s) 1172, 1448, 1463
BstPI GGTNACC 2 cut(s) 35, 1123
BstSCI CCNGG 3 cut(s) 1170, 1446, 1461
BstSFI CTRYAG 2 cut(s) 133, 415
BstSLI GKGCMC 3 cut(s) 775, 1170, 1470
BstUI CGCG 5 cut(s) 406, 587, 593, 1223, 1430
BstV1I GCAGC 3 cut(s) 329, 1308, 1574
BstV2I GAAGAC 2 cut(s) 109, 184
BstX2I RGATCY 3 cut(s) 381, 890, 970
BstXI CCANNNNNNTGG 1 cut(s) 1199
BstYI RGATCY 3 cut(s) 381, 890, 970
Bsu36I CCTNAGG 1 cut(s) 61
BsuRI GGCC 8 cut(s) 842, 999, 1226, 1345, 1427, 1441, 1457, 1468
BtgI CCRYGG 2 cut(s) 1221, 1288
BtgZI GCGATG 2 cut(s) 298, 841
BtsCI GGATG 3 cut(s) 802, 981, 1070
BtsI GCAGTG 1 cut(s) 1475
BtsIMutI CAGTG 2 cut(s) 83, 1475
Cac8I GCNNGC 5 cut(s) 408, 556, 589, 1051, 1189
CfoI GCGC 2 cut(s) 593, 1330
Cfr10I RCCGGY 2 cut(s) 32, 1127
Cfr13I GGNCC 6 cut(s) 109, 718, 1174, 1425, 1466, 1467
Cfr42I CCGCGG 1 cut(s) 1224
Csp6I GTAC 2 cut(s) 138, 1021
CspAI ACCGGT 2 cut(s) 32, 1127
CspCI CAANNNNNGTGG 2 cut(s) 850, 885
CviAII CATG 4 cut(s) 689, 802, 916, 1289
CviQI GTAC 2 cut(s) 138, 1021
DdeI CTNAG 4 cut(s) 61, 181, 576, 931
DinI GGCGCC 1 cut(s) 1329
DpnI GATC 7 cut(s) 11, 383, 892, 972, 1217, 1340, 1421
DpnII GATC 7 cut(s) 9, 381, 890, 970, 1215, 1338, 1419
EaeI YGGCCR 4 cut(s) 840, 997, 1224, 1343
Eam1104I CTCTTC 1 cut(s) 825
EarI CTCTTC 1 cut(s) 825
EciI GGCGGA 1 cut(s) 453
Eco130I CCWWGG 2 cut(s) 985, 1288
Eco147I AGGCCT 2 cut(s) 1441, 1457
Eco24I GRGCYC 1 cut(s) 1470
Eco47I GGWCC 3 cut(s) 109, 718, 1174
Eco57I CTGAAG 3 cut(s) 450, 537, 1167
Eco81I CCTNAGG 1 cut(s) 61
Eco88I CYCGRG 2 cut(s) 121, 1537
Eco91I GGTNACC 2 cut(s) 35, 1123
EcoNI CCTNNNNNAGG 2 cut(s) 713, 1451
EcoO109I RGGNCCY 2 cut(s) 1466, 1467
EcoO65I GGTNACC 2 cut(s) 35, 1123
EcoRI GAATTC 2 cut(s) 212, 673
EcoRII CCWGG 3 cut(s) 1170, 1446, 1461
EcoT14I CCWWGG 2 cut(s) 985, 1288
EcoT38I GRGCYC 1 cut(s) 1470
EgeI GGCGCC 1 cut(s) 1329
EheI GGCGCC 1 cut(s) 1329
ErhI CCWWGG 2 cut(s) 985, 1288
FaeI CATG 4 cut(s) 692, 805, 919, 1292
FalI AAGNNNNNCTT 2 cut(s) 639, 671
FaqI GGGAC 2 cut(s) 35, 287
FatI CATG 4 cut(s) 688, 801, 915, 1288
FauI CCCGC 1 cut(s) 1240
FbaI TGATCA 2 cut(s) 1215, 1419
FblI GTMKAC 1 cut(s) 1268
FokI GGATG 3 cut(s) 809, 968, 1057
FriOI GRGCYC 1 cut(s) 1470
FspBI CTAG 7 cut(s) 113, 437, 767, 899, 1038, 1050, 1503
GlaI GCGC 2 cut(s) 592, 1329
GsaI CCCAGC 1 cut(s) 544
GsuI CTGGAG 3 cut(s) 30, 370, 1469
HaeII RGCGCY 1 cut(s) 1331
HaeIII GGCC 8 cut(s) 842, 999, 1226, 1345, 1427, 1441, 1457, 1468
HapII CCGG 3 cut(s) 7, 33, 1128
HhaI GCGC 2 cut(s) 593, 1330
Hin1I GRCGYC 2 cut(s) 1265, 1328
Hin1II CATG 4 cut(s) 692, 805, 919, 1292
Hin6I GCGC 2 cut(s) 591, 1328
HinP1I GCGC 2 cut(s) 591, 1328
HincII GTYRAC 4 cut(s) 98, 364, 928, 1269
HindII GTYRAC 4 cut(s) 98, 364, 928, 1269
HindIII AAGCTT 1 cut(s) 178
HinfI GANTC 1 cut(s) 56
HpaI GTTAAC 1 cut(s) 364
HpaII CCGG 3 cut(s) 7, 33, 1128
HphI GGTGA 4 cut(s) 47, 187, 1210, 1358
Hpy188I TCNGA 4 cut(s) 430, 751, 954, 1103
Hpy188III TCNNGA 6 cut(s) 7, 63, 123, 445, 629, 1539
Hpy99I CGWCG 4 cut(s) 224, 287, 729, 1270
HpyAV CCTTC 4 cut(s) 512, 674, 1191, 1480
HpyCH4III ACNGT 3 cut(s) 134, 154, 416
HpyCH4IV ACGT 7 cut(s) 100, 301, 360, 867, 1164, 1256, 1265
HpyCH4V TGCA 6 cut(s) 338, 410, 817, 919, 1168, 1480
HpyF10VI GCNNNNNNNGC 6 cut(s) 317, 560, 590, 1073, 1325, 1342
HpyF3I CTNAG 4 cut(s) 61, 181, 576, 931
HpySE526I ACGT 7 cut(s) 100, 301, 360, 867, 1164, 1256, 1265
Hsp92I GRCGYC 2 cut(s) 1265, 1328
Hsp92II CATG 4 cut(s) 692, 805, 919, 1292
HspAI GCGC 2 cut(s) 591, 1328
KasI GGCGCC 1 cut(s) 1327
Kpn2I TCCGGA 1 cut(s) 6
Ksp22I TGATCA 2 cut(s) 1215, 1419
KspAI GTTAAC 1 cut(s) 364
KspI CCGCGG 1 cut(s) 1224
Kzo9I GATC 7 cut(s) 9, 381, 890, 970, 1215, 1338, 1419
LmnI GCTCC 2 cut(s) 65, 125
Lsp1109I GCAGC 3 cut(s) 329, 1308, 1574
LweI GCATC 1 cut(s) 579
MaeI CTAG 7 cut(s) 113, 437, 767, 899, 1038, 1050, 1503
MaeII ACGT 7 cut(s) 100, 301, 360, 867, 1164, 1256, 1265
MaeIII GTNAC 6 cut(s) 35, 154, 389, 595, 1123, 1257
MalI GATC 7 cut(s) 11, 383, 892, 972, 1217, 1340, 1421
MbiI CCGCTC 2 cut(s) 652, 1076
MboI GATC 7 cut(s) 9, 381, 890, 970, 1215, 1338, 1419
MboII GAAGA 6 cut(s) 109, 184, 298, 443, 706, 842
MfeI CAATTG 1 cut(s) 791
MflI RGATCY 3 cut(s) 381, 890, 970
MhlI GDGCHC 3 cut(s) 775, 1170, 1470
MlsI TGGCCA 2 cut(s) 999, 1345
MluCI AATT 4 cut(s) 212, 225, 673, 791
MluNI TGGCCA 2 cut(s) 999, 1345
Mly113I GGCGCC 1 cut(s) 1328
MmeI TCCRAC 1 cut(s) 1180
Mox20I TGGCCA 2 cut(s) 999, 1345
MroI TCCGGA 1 cut(s) 6
MscI TGGCCA 2 cut(s) 999, 1345
MseI TTAA 3 cut(s) 363, 657, 1311
MslI CAYNNNNRTG 1 cut(s) 405
Msp20I TGGCCA 2 cut(s) 999, 1345
MspA1I CMGCKG 3 cut(s) 1223, 1247, 1336
MspI CCGG 3 cut(s) 7, 33, 1128
MspR9I CCNGG 3 cut(s) 1172, 1448, 1463
MunI CAATTG 1 cut(s) 791
Mva1269I GAATGC 1 cut(s) 640
MvaI CCWGG 3 cut(s) 1172, 1448, 1463
MvnI CGCG 5 cut(s) 406, 587, 593, 1223, 1430
MwoI GCNNNNNNNGC 6 cut(s) 317, 560, 590, 1073, 1325, 1342
NarI GGCGCC 1 cut(s) 1328
NcoI CCATGG 1 cut(s) 1288
NdeII GATC 7 cut(s) 9, 381, 890, 970, 1215, 1338, 1419
NheI GCTAGC 1 cut(s) 1049
NlaIII CATG 4 cut(s) 692, 805, 919, 1292
NlaIV GGNNCC 7 cut(s) 67, 127, 162, 892, 1329, 1467, 1468
NmuCI GTSAC 2 cut(s) 35, 1257
OliI CACNNNNGTG 1 cut(s) 405
PceI AGGCCT 2 cut(s) 1441, 1457
PcsI WCGNNNNNNNCGW 2 cut(s) 864, 1262
PctI GAATGC 1 cut(s) 640
PfeI GAWTC 1 cut(s) 56
PinAI ACCGGT 2 cut(s) 32, 1127
PluTI GGCGCC 1 cut(s) 1331
Ppu21I YACGTR 1 cut(s) 1165
Psp6I CCWGG 3 cut(s) 1170, 1446, 1461
PspEI GGTNACC 2 cut(s) 35, 1123
PspFI CCCAGC 1 cut(s) 540
PspGI CCWGG 3 cut(s) 1170, 1446, 1461
PspN4I GGNNCC 7 cut(s) 67, 127, 162, 892, 1329, 1467, 1468
PspOMI GGGCCC 1 cut(s) 1466
PspPI GGNCC 6 cut(s) 109, 718, 1174, 1425, 1466, 1467
PsuI RGATCY 3 cut(s) 381, 890, 970
RsaI GTAC 2 cut(s) 139, 1022
RsaNI GTAC 2 cut(s) 138, 1021
RseI CAYNNNNRTG 1 cut(s) 405
SacII CCGCGG 1 cut(s) 1224
SalI GTCGAC 1 cut(s) 1267
SaqAI TTAA 3 cut(s) 363, 657, 1311
Sau3AI GATC 7 cut(s) 9, 381, 890, 970, 1215, 1338, 1419
Sau96I GGNCC 6 cut(s) 109, 718, 1174, 1425, 1466, 1467
ScaI AGTACT 1 cut(s) 139
ScrFI CCNGG 3 cut(s) 1172, 1448, 1463
SduI GDGCHC 3 cut(s) 775, 1170, 1470
SfaNI GCATC 1 cut(s) 579
SfcI CTRYAG 2 cut(s) 133, 415
SfoI GGCGCC 1 cut(s) 1329
Sfr303I CCGCGG 1 cut(s) 1224
SgrBI CCGCGG 1 cut(s) 1224
SinI GGWCC 3 cut(s) 109, 718, 1174
SmiMI CAYNNNNRTG 1 cut(s) 405
SmlI CTYRAG 1 cut(s) 761
SmoI CTYRAG 1 cut(s) 761
SpeI ACTAGT 1 cut(s) 436
Sse9I AATT 4 cut(s) 212, 225, 673, 791
SseBI AGGCCT 2 cut(s) 1441, 1457
SspDI GGCGCC 1 cut(s) 1327
SspMI CTAG 7 cut(s) 113, 437, 767, 899, 1038, 1050, 1503
StuI AGGCCT 2 cut(s) 1441, 1457
StyD4I CCNGG 3 cut(s) 1170, 1446, 1461
StyI CCWWGG 2 cut(s) 985, 1288
TaaI ACNGT 3 cut(s) 134, 154, 416
TaiI ACGT 7 cut(s) 103, 304, 363, 870, 1167, 1259, 1268
TaqI TCGA 5 cut(s) 219, 470, 502, 1268, 1551
TaqII GACCGA 2 cut(s) 97, 488
TasI AATT 4 cut(s) 212, 225, 673, 791
TatI WGTACW 2 cut(s) 137, 1020
TfiI GAWTC 1 cut(s) 56
Tru1I TTAA 3 cut(s) 363, 657, 1311
Tru9I TTAA 3 cut(s) 363, 657, 1311
TscAI CASTG 2 cut(s) 83, 1482
TseFI GTSAC 2 cut(s) 35, 1257
TseI GCWGC 3 cut(s) 317, 1296, 1562
Tsp45I GTSAC 2 cut(s) 35, 1257
TspDTI ATGAA 1 cut(s) 818
TspGWI ACGGA 2 cut(s) 173, 1167
TspRI CASTG 2 cut(s) 83, 1482
VneI GTGCAC 1 cut(s) 1166
VpaK11BI GGWCC 3 cut(s) 109, 718, 1174
XagI CCTNNNNNAGG 2 cut(s) 713, 1451
XapI RAATTY 2 cut(s) 212, 673
XcmI CCANNNNNNNNNTGG 1 cut(s) 1338
XmiI GTMKAC 1 cut(s) 1268
XspI CTAG 7 cut(s) 113, 437, 767, 899, 1038, 1050, 1503
ZraI GACGTC 1 cut(s) 1266
ZrmI AGTACT 1 cut(s) 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.