Rroxscaffold_177G00434310

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000177
OG0000057
Physical Location & Seq
Forward (+)
254868 .. 255654
787 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_177G00434310.1

Sequence Viewer

Length: 291 bp
ATGGTTGATGTGAATCGGGCCAAACAAAACCGCAGGAAGCCAACTTTGGATTTAAGCACTAATGGGCGAGAAAGAAAATCTGTTGACAATGACACCACCGCGAAGGAGAAAGCAAAACCGGTTGGTCAAGCTTCACCCCCTTTCGCGTACGAGCGAGCTCGGCGACAGGGGCATCGAAGCCCGGTGTTTTTGCAAGATCGCGAAGAAAGAACACCTCCGCTAGCTCAAAGGAAAGTTCGCCGACTCGGCGACCACATGTCGAGCAGGTTATTTCGCGAAGAACCGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

11.18

Weight (kDa)

11.07

Isoelectric Point (pI)

66.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000057)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00341 FvH4_2g18201 FvH4_2g24491 FvH4_2g24511 FvH4_3g22961 FvH4_3g33532 FvH4_3g33534 FvH4_4g05275 FvH4_4g12372 FvH4_5g20143 FvH4_7g12392
pyrus_communis pycom12g16120
rosa_chinensis RchiOBHm_Chr5g0023531 RchiOBHm_Chr6g0271201
rosa_laevigata RLG00000030639
rosa_multiflora Rmu_co8016136.1_g000001 Rmu_co8027180.1_g000001 Rmu_co8041016.1_g000001 Rmu_co8052812.1_g000001 Rmu_co8152468.1_g000001 Rmu_co8165796.1_g000001 Rmu_co8170214.1_g000001 Rmu_co8227433.1_g000001 Rmu_co8241379.1_g000001 Rmu_co8254305.1_g000001 Rmu_co8258647.1_g000001 Rmu_co8265535.1_g000002 Rmu_co8276845.1_g000001 Rmu_co8296303.1_g000001 Rmu_co8304827.1_g000001 Rmu_co8308345.1_g000001 Rmu_co8320493.1_g000002 Rmu_co8326955.1_g000001 Rmu_co8331007.1_g000001 Rmu_co8335625.1_g000001 Rmu_co8354465.1_g000001 Rmu_co8360201.1_g000001 Rmu_co8362075.1_g000002 Rmu_co8362991.1_g000001 Rmu_co8364567.1_g000001 Rmu_co8365273.1_g000001 Rmu_co8387267.1_g000001 Rmu_co8395251.1_g000002 Rmu_co8396677.1_g000001 Rmu_co8457659.1_g000001 Rmu_co8478117.1_g000001 Rmu_co8487163.1_g000001 Rmu_co8498169.1_g000001 Rmu_sc0000029.1_g000022 Rmu_sc0000063.1_g000007 Rmu_sc0000112.1_g000020 Rmu_sc0000146.1_g000006 Rmu_sc0000245.1_g000015 Rmu_sc0000276.1_g000036 Rmu_sc0000334.1_g000033 Rmu_sc0000334.1_g000034 Rmu_sc0000434.1_g000019 Rmu_sc0000441.1_g000118 Rmu_sc0000533.1_g000054 Rmu_sc0000533.1_g000055 Rmu_sc0000595.1_g000041 Rmu_sc0000663.1_g000019 Rmu_sc0000673.1_g000002 Rmu_sc0000698.1_g000102 Rmu_sc0000745.1_g000007 Rmu_sc0000768.1_g000018 Rmu_sc0000811.1_g000012 Rmu_sc0000826.1_g000009 Rmu_sc0000826.1_g000011 Rmu_sc0001051.1_g000042 Rmu_sc0001051.1_g000043 Rmu_sc0001148.1_g000014 Rmu_sc0001198.1_g000021 Rmu_sc0001227.1_g000008 Rmu_sc0001250.1_g000028 Rmu_sc0001395.1_g000019 Rmu_sc0001395.1_g000020 Rmu_sc0001396.1_g000002 Rmu_sc0001424.1_g000007 Rmu_sc0001455.1_g000025 Rmu_sc0001455.1_g000029 Rmu_sc0001499.1_g000036 Rmu_sc0001539.1_g000001 Rmu_sc0001562.1_g000027 Rmu_sc0001563.1_g000024 Rmu_sc0001719.1_g000022 Rmu_sc0001796.1_g000008 Rmu_sc0001884.1_g000022 Rmu_sc0001903.1_g000018 Rmu_sc0002041.1_g000012 Rmu_sc0002096.1_g000002 Rmu_sc0002126.1_g000027 Rmu_sc0002181.1_g000010 Rmu_sc0002259.1_g000004 Rmu_sc0002279.1_g000018 Rmu_sc0002312.1_g000060 Rmu_sc0002383.1_g000011 Rmu_sc0002401.1_g000012 Rmu_sc0002509.1_g000028 Rmu_sc0002569.1_g000008 Rmu_sc0002587.1_g000037 Rmu_sc0002665.1_g000006 Rmu_sc0002698.1_g000018 Rmu_sc0002724.1_g000002 Rmu_sc0002727.1_g000011 Rmu_sc0002927.1_g000055 Rmu_sc0002927.1_g000056 Rmu_sc0002943.1_g000009 Rmu_sc0002943.1_g000023 Rmu_sc0002998.1_g000001 Rmu_sc0003089.1_g000036 Rmu_sc0003127.1_g000022 Rmu_sc0003127.1_g000040 Rmu_sc0003207.1_g000010 Rmu_sc0003207.1_g000011 Rmu_sc0003275.1_g000034 Rmu_sc0003275.1_g000036 Rmu_sc0003337.1_g000047 Rmu_sc0003376.1_g000004 Rmu_sc0003522.1_g000024 Rmu_sc0003613.1_g000007 Rmu_sc0003708.1_g000026 Rmu_sc0003784.1_g000018 Rmu_sc0004079.1_g000005 Rmu_sc0004092.1_g000017 Rmu_sc0004168.1_g000058 Rmu_sc0004174.1_g000019 Rmu_sc0004199.1_g000049 Rmu_sc0004230.1_g000005 Rmu_sc0004283.1_g000021 Rmu_sc0004283.1_g000022 Rmu_sc0004314.1_g000017 Rmu_sc0004538.1_g000006 Rmu_sc0004542.1_g000011 Rmu_sc0004602.1_g000024 Rmu_sc0004641.1_g000006 Rmu_sc0004862.1_g000011 Rmu_sc0004941.1_g000043 Rmu_sc0005003.1_g000003 Rmu_sc0005112.1_g000018 Rmu_sc0005144.1_g000014 Rmu_sc0005266.1_g000014 Rmu_sc0005418.1_g000004 Rmu_sc0005627.1_g000006 Rmu_sc0005652.1_g000022 Rmu_sc0005747.1_g000032 Rmu_sc0005982.1_g000013 Rmu_sc0006050.1_g000017 Rmu_sc0006059.1_g000035 Rmu_sc0006128.1_g000002 Rmu_sc0006228.1_g000009 Rmu_sc0006243.1_g000009 Rmu_sc0006300.1_g000004 Rmu_sc0006463.1_g000007 Rmu_sc0006579.1_g000016 Rmu_sc0006595.1_g000011 Rmu_sc0006624.1_g000006 Rmu_sc0006624.1_g000007 Rmu_sc0006624.1_g000008 Rmu_sc0006674.1_g000025 Rmu_sc0006792.1_g000013 Rmu_sc0006872.1_g000022 Rmu_sc0006984.1_g000009 Rmu_sc0006984.1_g000010 Rmu_sc0006986.1_g000011 Rmu_sc0007016.1_g000001 Rmu_sc0007221.1_g000006 Rmu_sc0007222.1_g000005 Rmu_sc0007222.1_g000006 Rmu_sc0007251.1_g000001 Rmu_sc0007777.1_g000037 Rmu_sc0007826.1_g000018 Rmu_sc0008053.1_g000015 Rmu_sc0008502.1_g000006 Rmu_sc0008659.1_g000009 Rmu_sc0009045.1_g000009 Rmu_sc0009045.1_g000010 Rmu_sc0009060.1_g000012 Rmu_sc0009360.1_g000024 Rmu_sc0009431.1_g000001 Rmu_sc0009606.1_g000014 Rmu_sc0009774.1_g000001 Rmu_sc0009844.1_g000014 Rmu_sc0010313.1_g000001 Rmu_sc0010454.1_g000008 Rmu_sc0010543.1_g000016 Rmu_sc0010900.1_g000002 Rmu_sc0010925.1_g000009 Rmu_sc0011136.1_g000012 Rmu_sc0011534.1_g000004 Rmu_sc0011809.1_g000007 Rmu_sc0011917.1_g000005 Rmu_sc0012103.1_g000001 Rmu_sc0012287.1_g000001 Rmu_sc0012303.1_g000007 Rmu_sc0012344.1_g000009 Rmu_sc0012674.1_g000007 Rmu_sc0012686.1_g000001 Rmu_sc0012742.1_g000005 Rmu_sc0012746.1_g000026 Rmu_sc0012746.1_g000027 Rmu_sc0013419.1_g000008 Rmu_sc0014866.1_g000004 Rmu_sc0015325.1_g000011 Rmu_sc0015486.1_g000005 Rmu_sc0015651.1_g000002 Rmu_sc0015783.1_g000001 Rmu_sc0016387.1_g000009 Rmu_sc0017518.1_g000005 Rmu_sc0018480.1_g000001 Rmu_sc0018537.1_g000003 Rmu_sc0019200.1_g000002 Rmu_sc0019544.1_g000014 Rmu_sc0019544.1_g000015 Rmu_sc0019873.1_g000001 Rmu_sc0020392.1_g000001 Rmu_sc0020466.1_g000001 Rmu_sc0022008.1_g000001 Rmu_sc0022008.1_g000002 Rmu_sc0022274.1_g000001 Rmu_sc0023644.1_g000005 Rmu_sc0024657.1_g000001 Rmu_sc0024721.1_g000003 Rmu_sc0025790.1_g000001 Rmu_sc0026866.1_g000001 Rmu_sc0027363.1_g000002 Rmu_sc0027485.1_g000001 Rmu_sc0028394.1_g000001 Rmu_sc0033121.1_g000002 Rmu_sc0033838.1_g000001 Rmu_sc0035536.1_g000001 Rmu_sc0036296.1_g000001 Rmu_sc0036297.1_g000001 Rmu_sc0036298.1_g000001 Rmu_sc0036797.1_g000001 Rmu_sc0037010.1_g000001 Rmu_sc0037444.1_g000002 Rmu_sc0039012.1_g000002 Rmu_sc0040172.1_g000001 Rmu_sc0042083.1_g000001 Rmu_ssc0000018.1_g000001 Rmu_ssc0000171.1_g000032 Rmu_ssc0000213.1_g000064 Rmu_ssc0000213.1_g000096 Rmu_ssc0000262.1_g000017 Rmu_ssc0000295.1_g000036 Rmu_ssc0000343.1_g000008 Rmu_ssc0000398.1_g000003 Rmu_ssc0000400.1_g000085 Rmu_ssc0000438.1_g000007 Rmu_ssc0000478.1_g000003
rosa_roxburghii Rroxscaffold_166G00440710 Rroxscaffold_166G00440720 Rroxscaffold_174G00435300 Rroxscaffold_174G00435310 Rroxscaffold_177G00434290 Rroxscaffold_177G00434300 Rroxscaffold_177G00434310 Rroxscaffold_178G00437310 Rroxscaffold_1G00002500 Rroxscaffold_1G00004730 Rroxscaffold_1G00008660 Rroxscaffold_1G00008670 Rroxscaffold_1G00008680 Rroxscaffold_1G00008690 Rroxscaffold_1G00010260 Rroxscaffold_1G00015670 Rroxscaffold_1G00021140 Rroxscaffold_1G00024380 Rroxscaffold_1G00032420 Rroxscaffold_1G00050600 Rroxscaffold_1G00050610 Rroxscaffold_1G00055970 Rroxscaffold_1G00066220 Rroxscaffold_2G00085370 Rroxscaffold_2G00092350 Rroxscaffold_2G00092360 Rroxscaffold_2G00093350 Rroxscaffold_2G00097090 Rroxscaffold_2G00108040 Rroxscaffold_2G00109970 Rroxscaffold_2G00111470 Rroxscaffold_2G00111480 Rroxscaffold_2G00112000 Rroxscaffold_2G00112060 Rroxscaffold_2G00129160 Rroxscaffold_2G00132340 Rroxscaffold_2G00136720 Rroxscaffold_2G00152910 Rroxscaffold_3G00223160 Rroxscaffold_3G00223170 Rroxscaffold_3G00223520 Rroxscaffold_3G00230980 Rroxscaffold_3G00245030 Rroxscaffold_3G00259050 Rroxscaffold_3G00259060 Rroxscaffold_3G00259070 Rroxscaffold_3G00267470 Rroxscaffold_3G00272040 Rroxscaffold_3G00272440 Rroxscaffold_3G00272450 Rroxscaffold_4G00285860 Rroxscaffold_4G00285870 Rroxscaffold_4G00294380 Rroxscaffold_4G00294390 Rroxscaffold_4G00297890 Rroxscaffold_4G00298150 Rroxscaffold_4G00303090 Rroxscaffold_4G00306480 Rroxscaffold_4G00306680 Rroxscaffold_4G00310490 Rroxscaffold_4G00310630 Rroxscaffold_4G00310670 Rroxscaffold_4G00310680 Rroxscaffold_4G00310690 Rroxscaffold_4G00317930 Rroxscaffold_4G00320190 Rroxscaffold_4G00323370 Rroxscaffold_4G00323380 Rroxscaffold_4G00324200 Rroxscaffold_4G00331220 Rroxscaffold_5G00339230 Rroxscaffold_5G00341260 Rroxscaffold_5G00343120 Rroxscaffold_5G00345440 Rroxscaffold_5G00345450 Rroxscaffold_5G00353190 Rroxscaffold_5G00353420 Rroxscaffold_5G00356560 Rroxscaffold_5G00359790 Rroxscaffold_5G00381710 Rroxscaffold_5G00381720 Rroxscaffold_5G00386250 Rroxscaffold_5G00387520 Rroxscaffold_6G00390180 Rroxscaffold_6G00392810 Rroxscaffold_6G00401230 Rroxscaffold_6G00402640 Rroxscaffold_6G00405640 Rroxscaffold_6G00405650 Rroxscaffold_6G00405850 Rroxscaffold_6G00405860 Rroxscaffold_6G00412020 Rroxscaffold_6G00415690 Rroxscaffold_6G00415700 Rroxscaffold_7G00168110 Rroxscaffold_7G00178950 Rroxscaffold_7G00178960 Rroxscaffold_7G00193670 Rroxscaffold_7G00203020 Rroxscaffold_7G00203340 Rroxscaffold_7G00203550 Rroxscaffold_7G00207220 Rroxscaffold_7G00207250 Rroxscaffold_7G00207430 Rroxscaffold_7G00209310 Rroxscaffold_7G00211530 Rroxscaffold_7G00211540 Rroxscaffold_7G00214160 Rroxscaffold_7G00216040 Rroxscaffold_7G00216800
rosa_samantha Rh1AG276800 Rh1CG260400 Rh3CG366700
rosa_wichuraiana Rw1G001440 Rw3G029210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 255
AccII CGCG 4 cut(s) 101, 146, 201, 276
AciI CCGC 3 cut(s) 31, 99, 218
AfaI GTAC 1 cut(s) 149
AflIII ACRYGT 1 cut(s) 255
AgeI ACCGGT 1 cut(s) 118
AhdI GACNNNNNGTC 1 cut(s) 256
AjuI GAANNNNNNNTTGG 2 cut(s) 29, 61
AluBI AGCT 3 cut(s) 131, 158, 224
AluI AGCT 3 cut(s) 131, 158, 224
Alw21I GWGCWC 1 cut(s) 160
AoxI GGCC 1 cut(s) 18
AsiGI ACCGGT 1 cut(s) 118
AspS9I GGNCC 1 cut(s) 18
AsuC2I CCSGG 1 cut(s) 182
AsuHPI GGTGA 1 cut(s) 126
AsuNHI GCTAGC 1 cut(s) 220
BanII GRGCYC 1 cut(s) 160
Bbv12I GWGCWC 1 cut(s) 160
BcnI CCSGG 1 cut(s) 182
BfaI CTAG 1 cut(s) 221
BfuAI ACCTGC 1 cut(s) 255
BglI GCCNNNNNGGC 1 cut(s) 246
Bme1390I CCNGG 1 cut(s) 182
BmeRI GACNNNNNGTC 1 cut(s) 256
BmgT120I GGNCC 1 cut(s) 18
BmrFI CCNGG 1 cut(s) 182
BmsI GCATC 1 cut(s) 181
BmtI GCTAGC 1 cut(s) 224
BpuMI CCSGG 1 cut(s) 182
BsaBI GATNNNNATC 1 cut(s) 12
BsaWI WCCGGW 1 cut(s) 118
Bse118I RCCGGY 1 cut(s) 118
Bse8I GATNNNNATC 1 cut(s) 12
BseJI GATNNNNATC 1 cut(s) 12
Bsh1236I CGCG 4 cut(s) 101, 146, 201, 276
BshFI GGCC 1 cut(s) 20
BshTI ACCGGT 1 cut(s) 118
BsiHKAI GWGCWC 1 cut(s) 160
BsiSI CCGG 2 cut(s) 119, 182
BsiWI CGTACG 1 cut(s) 147
BsnI GGCC 1 cut(s) 20
Bsp1286I GDGCHC 1 cut(s) 160
Bsp143I GATC 1 cut(s) 196
Bsp68I TCGCGA 2 cut(s) 201, 276
BspACI CCGC 3 cut(s) 31, 99, 218
BspANI GGCC 1 cut(s) 20
BspFNI CGCG 4 cut(s) 101, 146, 201, 276
BspMI ACCTGC 1 cut(s) 255
BspOI GCTAGC 1 cut(s) 224
BsrFI RCCGGY 1 cut(s) 118
BssAI RCCGGY 1 cut(s) 118
BssMI GATC 1 cut(s) 196
BstC8I GCNNGC 2 cut(s) 156, 222
BstFNI CGCG 4 cut(s) 101, 146, 201, 276
BstKTI GATC 1 cut(s) 199
BstMBI GATC 1 cut(s) 196
BstMWI GCNNNNNNNGC 3 cut(s) 160, 169, 246
BstNSI RCATGY 1 cut(s) 259
BstSCI CCNGG 1 cut(s) 180
BstUI CGCG 4 cut(s) 101, 146, 201, 276
BsuRI GGCC 1 cut(s) 20
BtuMI TCGCGA 2 cut(s) 201, 276
BveI ACCTGC 1 cut(s) 255
Cac8I GCNNGC 2 cut(s) 156, 222
Cfr10I RCCGGY 1 cut(s) 118
Cfr13I GGNCC 1 cut(s) 18
Csp6I GTAC 1 cut(s) 148
CspAI ACCGGT 1 cut(s) 118
CviAII CATG 1 cut(s) 256
CviJI RGCY 6 cut(s) 20, 40, 131, 158, 180, 224
CviKI_1 RGCY 6 cut(s) 20, 40, 131, 158, 180, 224
CviQI GTAC 1 cut(s) 148
DpnI GATC 1 cut(s) 198
DpnII GATC 1 cut(s) 196
DriI GACNNNNNGTC 1 cut(s) 256
Eam1105I GACNNNNNGTC 1 cut(s) 256
Ecl136II GAGCTC 1 cut(s) 158
Eco24I GRGCYC 1 cut(s) 160
Eco53kI GAGCTC 1 cut(s) 158
EcoICRI GAGCTC 1 cut(s) 158
EcoT38I GRGCYC 1 cut(s) 160
FaeI CATG 1 cut(s) 259
FaiI YATR 1 cut(s) 257
FatI CATG 1 cut(s) 255
FriOI GRGCYC 1 cut(s) 160
FspBI CTAG 1 cut(s) 221
HaeIII GGCC 1 cut(s) 20
HapII CCGG 2 cut(s) 119, 182
Hin1II CATG 1 cut(s) 259
HincII GTYRAC 1 cut(s) 85
HindII GTYRAC 1 cut(s) 85
HindIII AAGCTT 1 cut(s) 129
HinfI GANTC 2 cut(s) 13, 243
HpaII CCGG 2 cut(s) 119, 182
HphI GGTGA 1 cut(s) 126
Hpy166II GTNNAC 1 cut(s) 85
Hpy188III TCNNGA 2 cut(s) 200, 275
Hpy8I GTNNAC 1 cut(s) 85
HpyAV CCTTC 1 cut(s) 97
HpyCH4V TGCA 1 cut(s) 193
HpyF10VI GCNNNNNNNGC 3 cut(s) 160, 169, 246
Hsp92II CATG 1 cut(s) 259
Kzo9I GATC 1 cut(s) 196
LpnPI CCDG 5 cut(s) 19, 132, 152, 195, 250
LweI GCATC 1 cut(s) 181
MaeI CTAG 1 cut(s) 221
MalI GATC 1 cut(s) 198
MboI GATC 1 cut(s) 196
MboII GAAGA 2 cut(s) 215, 290
MhlI GDGCHC 1 cut(s) 160
MlyI GAGTC 1 cut(s) 237
MnlI CCTC 1 cut(s) 225
MseI TTAA 1 cut(s) 53
MspI CCGG 2 cut(s) 119, 182
MspR9I CCNGG 1 cut(s) 182
MvnI CGCG 4 cut(s) 101, 146, 201, 276
MwoI GCNNNNNNNGC 3 cut(s) 160, 169, 246
NciI CCSGG 1 cut(s) 182
NdeII GATC 1 cut(s) 196
NheI GCTAGC 1 cut(s) 220
NlaIII CATG 1 cut(s) 259
NmeAIII GCCGAG 2 cut(s) 139, 225
NruI TCGCGA 2 cut(s) 201, 276
NspI RCATGY 1 cut(s) 259
PciI ACATGT 1 cut(s) 255
PfeI GAWTC 1 cut(s) 13
Pfl23II CGTACG 1 cut(s) 147
PinAI ACCGGT 1 cut(s) 118
PleI GAGTC 1 cut(s) 237
PpsI GAGTC 1 cut(s) 237
PscI ACATGT 1 cut(s) 255
Psp124BI GAGCTC 1 cut(s) 160
PspLI CGTACG 1 cut(s) 147
PspPI GGNCC 1 cut(s) 18
RruI TCGCGA 2 cut(s) 201, 276
RsaI GTAC 1 cut(s) 149
RsaNI GTAC 1 cut(s) 148
SacI GAGCTC 1 cut(s) 160
SaqAI TTAA 1 cut(s) 53
Sau3AI GATC 1 cut(s) 196
Sau96I GGNCC 1 cut(s) 18
SchI GAGTC 1 cut(s) 237
ScrFI CCNGG 1 cut(s) 182
SduI GDGCHC 1 cut(s) 160
SetI ASST 5 cut(s) 133, 160, 217, 226, 269
SfaNI GCATC 1 cut(s) 181
SsiI CCGC 3 cut(s) 31, 99, 218
SspMI CTAG 1 cut(s) 221
SstI GAGCTC 1 cut(s) 160
StyD4I CCNGG 1 cut(s) 180
TaqI TCGA 2 cut(s) 175, 260
TfiI GAWTC 1 cut(s) 13
Tru1I TTAA 1 cut(s) 53
Tru9I TTAA 1 cut(s) 53
XceI RCATGY 1 cut(s) 259
XspI CTAG 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.