Retrotransposon gag protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 603 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 187 |
| Acc36I | ACCTGC | 1 cut(s) | 17 |
| AccB1I | GGYRCC | 1 cut(s) | 299 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 448 |
| AccI | GTMKAC | 1 cut(s) | 208 |
| AciI | CCGC | 6 cut(s) | 34, 76, 131, 165, 195, 347 |
| AclWI | GGATC | 2 cut(s) | 505, 728 |
| AcuI | CTGAAG | 1 cut(s) | 155 |
| AcyI | GRCGYC | 1 cut(s) | 300 |
| AfaI | GTAC | 5 cut(s) | 70, 384, 423, 678, 692 |
| AfeI | AGCGCT | 2 cut(s) | 153, 336 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 364, 448 |
| AflIII | ACRYGT | 2 cut(s) | 385, 424 |
| AgsI | TTSAA | 1 cut(s) | 269 |
| AjnI | CCWGG | 3 cut(s) | 51, 593, 775 |
| AluBI | AGCT | 6 cut(s) | 101, 113, 233, 665, 746, 769 |
| AluI | AGCT | 6 cut(s) | 101, 113, 233, 665, 746, 769 |
| Alw26I | GTCTC | 1 cut(s) | 35 |
| AlwI | GGATC | 2 cut(s) | 505, 728 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 116, 746 |
| Aor51HI | AGCGCT | 2 cut(s) | 153, 336 |
| AoxI | GGCC | 2 cut(s) | 222, 531 |
| ApaI | GGGCCC | 1 cut(s) | 535 |
| ApeKI | GCWGC | 4 cut(s) | 168, 233, 361, 746 |
| AspA2I | CCTAGG | 1 cut(s) | 527 |
| AspLEI | GCGC | 3 cut(s) | 154, 302, 337 |
| AspS9I | GGNCC | 3 cut(s) | 531, 532, 557 |
| AsuHPI | GGTGA | 1 cut(s) | 361 |
| AsuNHI | GCTAGC | 1 cut(s) | 400 |
| AvaII | GGWCC | 1 cut(s) | 557 |
| AvrII | CCTAGG | 1 cut(s) | 527 |
| BaeGI | GKGCMC | 1 cut(s) | 535 |
| BanI | GGYRCC | 1 cut(s) | 299 |
| BanII | GRGCYC | 1 cut(s) | 535 |
| BbsI | GAAGAC | 2 cut(s) | 100, 642 |
| BbvCI | CCTCAGC | 1 cut(s) | 109 |
| BbvI | GCAGC | 4 cut(s) | 180, 220, 373, 733 |
| BccI | CCATC | 5 cut(s) | 35, 275, 536, 666, 750 |
| BceAI | ACGGC | 1 cut(s) | 305 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 419, 453 |
| BciT130I | CCWGG | 3 cut(s) | 53, 595, 777 |
| BcoDI | GTCTC | 1 cut(s) | 35 |
| BfaI | CTAG | 5 cut(s) | 98, 401, 528, 662, 666 |
| BfmI | CTRYAG | 1 cut(s) | 234 |
| BfoI | RGCGCY | 3 cut(s) | 155, 303, 338 |
| BfuAI | ACCTGC | 1 cut(s) | 17 |
| BisI | GCNGC | 6 cut(s) | 76, 166, 169, 234, 362, 747 |
| BlnI | CCTAGG | 1 cut(s) | 527 |
| BlpI | GCTNAGC | 1 cut(s) | 3 |
| BlsI | GCNGC | 6 cut(s) | 77, 167, 170, 235, 363, 748 |
| Bme1390I | CCNGG | 3 cut(s) | 53, 595, 777 |
| Bme18I | GGWCC | 1 cut(s) | 557 |
| BmgT120I | GGNCC | 3 cut(s) | 531, 532, 557 |
| BmiI | GGNNCC | 3 cut(s) | 301, 533, 558 |
| BmrFI | CCNGG | 3 cut(s) | 53, 595, 777 |
| BmsI | GCATC | 2 cut(s) | 226, 479 |
| BmtI | GCTAGC | 1 cut(s) | 404 |
| BpiI | GAAGAC | 2 cut(s) | 100, 642 |
| BpmI | CTGGAG | 1 cut(s) | 341 |
| Bpu10I | CCTNAGC | 1 cut(s) | 109 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 3 |
| BsaAI | YACGTR | 1 cut(s) | 72 |
| BsaHI | GRCGYC | 1 cut(s) | 300 |
| BsaI | GGTCTC | 1 cut(s) | 35 |
| BsaJI | CCNNGG | 5 cut(s) | 60, 527, 593, 594, 642 |
| BsaWI | WCCGGW | 1 cut(s) | 513 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 445, 475 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 364, 448 |
| Bse118I | RCCGGY | 1 cut(s) | 374 |
| Bse1I | ACTGG | 1 cut(s) | 204 |
| BseBI | CCWGG | 3 cut(s) | 53, 595, 777 |
| BseDI | CCNNGG | 5 cut(s) | 60, 527, 593, 594, 642 |
| BseGI | GGATG | 4 cut(s) | 104, 245, 547, 652 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 364, 448 |
| BseMII | CTCAG | 1 cut(s) | 123 |
| BseNI | ACTGG | 1 cut(s) | 204 |
| BseRI | GAGGAG | 4 cut(s) | 450, 453, 456, 518 |
| BseSI | GKGCMC | 1 cut(s) | 535 |
| BseXI | GCAGC | 4 cut(s) | 180, 220, 373, 733 |
| BseYI | CCCAGC | 2 cut(s) | 470, 534 |
| BsgI | GTGCAG | 1 cut(s) | 449 |
| Bsh1285I | CGRYCG | 1 cut(s) | 60 |
| BshFI | GGCC | 2 cut(s) | 224, 533 |
| BshNI | GGYRCC | 1 cut(s) | 299 |
| BsiEI | CGRYCG | 1 cut(s) | 60 |
| BsiSI | CCGG | 4 cut(s) | 297, 375, 514, 539 |
| BslFI | GGGAC | 1 cut(s) | 570 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 364, 448 |
| BsmAI | GTCTC | 1 cut(s) | 35 |
| BsmFI | GGGAC | 1 cut(s) | 570 |
| BsnI | GGCC | 2 cut(s) | 224, 533 |
| Bso31I | GGTCTC | 1 cut(s) | 35 |
| Bsp120I | GGGCCC | 1 cut(s) | 531 |
| Bsp1286I | GDGCHC | 1 cut(s) | 535 |
| Bsp1407I | TGTACA | 1 cut(s) | 382 |
| Bsp143I | GATC | 3 cut(s) | 306, 510, 720 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 3 |
| BspACI | CCGC | 6 cut(s) | 34, 76, 131, 165, 195, 347 |
| BspANI | GGCC | 2 cut(s) | 224, 533 |
| BspCNI | CTCAG | 1 cut(s) | 122 |
| BspLI | GGNNCC | 3 cut(s) | 301, 533, 558 |
| BspMAI | CTGCAG | 1 cut(s) | 238 |
| BspMI | ACCTGC | 1 cut(s) | 17 |
| BspOI | GCTAGC | 1 cut(s) | 404 |
| BspPI | GGATC | 2 cut(s) | 505, 728 |
| BspT107I | GGYRCC | 1 cut(s) | 299 |
| BspTNI | GGTCTC | 1 cut(s) | 35 |
| BsrFI | RCCGGY | 1 cut(s) | 374 |
| BsrGI | TGTACA | 1 cut(s) | 382 |
| BsrI | ACTGG | 1 cut(s) | 204 |
| BssAI | RCCGGY | 1 cut(s) | 374 |
| BssECI | CCNNGG | 5 cut(s) | 60, 527, 593, 594, 642 |
| BssMI | GATC | 3 cut(s) | 306, 510, 720 |
| BssNI | GRCGYC | 1 cut(s) | 300 |
| BssT1I | CCWWGG | 1 cut(s) | 527 |
| Bst2UI | CCWGG | 3 cut(s) | 53, 595, 777 |
| Bst4CI | ACNGT | 6 cut(s) | 118, 278, 409, 421, 448, 681 |
| BstACI | GRCGYC | 1 cut(s) | 300 |
| BstAUI | TGTACA | 1 cut(s) | 382 |
| BstBAI | YACGTR | 1 cut(s) | 72 |
| BstC8I | GCNNGC | 6 cut(s) | 150, 345, 366, 402, 432, 582 |
| BstDEI | CTNAG | 2 cut(s) | 3, 109 |
| BstF5I | GGATG | 4 cut(s) | 104, 245, 547, 652 |
| BstH2I | RGCGCY | 3 cut(s) | 155, 303, 338 |
| BstHHI | GCGC | 3 cut(s) | 154, 302, 337 |
| BstKTI | GATC | 3 cut(s) | 309, 513, 723 |
| BstMAI | GTCTC | 1 cut(s) | 35 |
| BstMBI | GATC | 3 cut(s) | 306, 510, 720 |
| BstMCI | CGRYCG | 1 cut(s) | 60 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 53, 62, 84, 119, 230 |
| BstNI | CCWGG | 3 cut(s) | 53, 595, 777 |
| BstNSI | RCATGY | 2 cut(s) | 389, 428 |
| BstSCI | CCNGG | 3 cut(s) | 51, 593, 775 |
| BstSFI | CTRYAG | 1 cut(s) | 234 |
| BstSLI | GKGCMC | 1 cut(s) | 535 |
| BstV1I | GCAGC | 4 cut(s) | 180, 220, 373, 733 |
| BstV2I | GAAGAC | 2 cut(s) | 100, 642 |
| BstX2I | RGATCY | 1 cut(s) | 720 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 281, 542 |
| BstYI | RGATCY | 1 cut(s) | 720 |
| BsuRI | GGCC | 2 cut(s) | 224, 533 |
| BtsCI | GGATG | 4 cut(s) | 104, 245, 547, 652 |
| BtsIMutI | CAGTG | 2 cut(s) | 283, 686 |
| BveI | ACCTGC | 1 cut(s) | 17 |
| Cac8I | GCNNGC | 6 cut(s) | 150, 345, 366, 402, 432, 582 |
| CaiI | CAGNNNCTG | 2 cut(s) | 116, 746 |
| CfoI | GCGC | 3 cut(s) | 154, 302, 337 |
| Cfr10I | RCCGGY | 1 cut(s) | 374 |
| Cfr13I | GGNCC | 3 cut(s) | 531, 532, 557 |
| Csp6I | GTAC | 5 cut(s) | 69, 383, 422, 677, 691 |
| CviAII | CATG | 4 cut(s) | 22, 386, 425, 577 |
| CviQI | GTAC | 5 cut(s) | 69, 383, 422, 677, 691 |
| DdeI | CTNAG | 2 cut(s) | 3, 109 |
| DinI | GGCGCC | 1 cut(s) | 301 |
| DpnI | GATC | 3 cut(s) | 308, 512, 722 |
| DpnII | GATC | 3 cut(s) | 306, 510, 720 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 187 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 187 |
| Eco130I | CCWWGG | 1 cut(s) | 527 |
| Eco147I | AGGCCT | 1 cut(s) | 224 |
| Eco24I | GRGCYC | 1 cut(s) | 535 |
| Eco31I | GGTCTC | 1 cut(s) | 35 |
| Eco47I | GGWCC | 1 cut(s) | 557 |
| Eco47III | AGCGCT | 2 cut(s) | 153, 336 |
| Eco57I | CTGAAG | 1 cut(s) | 155 |
| EcoO109I | RGGNCCY | 2 cut(s) | 531, 557 |
| EcoRII | CCWGG | 3 cut(s) | 51, 593, 775 |
| EcoT14I | CCWWGG | 1 cut(s) | 527 |
| EcoT38I | GRGCYC | 1 cut(s) | 535 |
| EgeI | GGCGCC | 1 cut(s) | 301 |
| EheI | GGCGCC | 1 cut(s) | 301 |
| ErhI | CCWWGG | 1 cut(s) | 527 |
| FaeI | CATG | 4 cut(s) | 25, 389, 428, 580 |
| FaiI | YATR | 8 cut(s) | 23, 387, 426, 483, 552, 573, 578, 603 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 85, 117, 170, 202 |
| FaqI | GGGAC | 1 cut(s) | 570 |
| FatI | CATG | 4 cut(s) | 21, 385, 424, 576 |
| FblI | GTMKAC | 1 cut(s) | 208 |
| Fnu4HI | GCNGC | 6 cut(s) | 76, 166, 169, 234, 362, 747 |
| FokI | GGATG | 4 cut(s) | 91, 232, 554, 659 |
| FriOI | GRGCYC | 1 cut(s) | 535 |
| Fsp4HI | GCNGC | 6 cut(s) | 76, 166, 169, 234, 362, 747 |
| FspBI | CTAG | 5 cut(s) | 98, 401, 528, 662, 666 |
| GlaI | GCGC | 3 cut(s) | 153, 301, 336 |
| GluI | GCNGC | 6 cut(s) | 76, 166, 169, 234, 362, 747 |
| GsaI | CCCAGC | 2 cut(s) | 474, 538 |
| GsuI | CTGGAG | 1 cut(s) | 341 |
| HaeII | RGCGCY | 3 cut(s) | 155, 303, 338 |
| HaeIII | GGCC | 2 cut(s) | 224, 533 |
| HapII | CCGG | 4 cut(s) | 297, 375, 514, 539 |
| HhaI | GCGC | 3 cut(s) | 154, 302, 337 |
| Hin1I | GRCGYC | 1 cut(s) | 300 |
| Hin1II | CATG | 4 cut(s) | 25, 389, 428, 580 |
| Hin6I | GCGC | 3 cut(s) | 152, 300, 335 |
| HinP1I | GCGC | 3 cut(s) | 152, 300, 335 |
| HindIII | AAGCTT | 1 cut(s) | 767 |
| HinfI | GANTC | 1 cut(s) | 352 |
| HpaII | CCGG | 4 cut(s) | 297, 375, 514, 539 |
| HphI | GGTGA | 1 cut(s) | 361 |
| Hpy166II | GTNNAC | 2 cut(s) | 209, 412 |
| Hpy188I | TCNGA | 2 cut(s) | 19, 755 |
| Hpy188III | TCNNGA | 2 cut(s) | 310, 741 |
| Hpy8I | GTNNAC | 2 cut(s) | 209, 412 |
| Hpy99I | CGWCG | 1 cut(s) | 497 |
| HpyAV | CCTTC | 1 cut(s) | 271 |
| HpyCH4III | ACNGT | 6 cut(s) | 118, 278, 409, 421, 448, 681 |
| HpyCH4IV | ACGT | 2 cut(s) | 14, 71 |
| HpyCH4V | TGCA | 3 cut(s) | 236, 430, 717 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 53, 62, 84, 119, 230 |
| HpyF3I | CTNAG | 2 cut(s) | 3, 109 |
| HpySE526I | ACGT | 2 cut(s) | 14, 71 |
| Hsp92I | GRCGYC | 1 cut(s) | 300 |
| Hsp92II | CATG | 4 cut(s) | 25, 389, 428, 580 |
| HspAI | GCGC | 3 cut(s) | 152, 300, 335 |
| KasI | GGCGCC | 1 cut(s) | 299 |
| Kzo9I | GATC | 3 cut(s) | 306, 510, 720 |
| LmnI | GCTCC | 1 cut(s) | 743 |
| Lsp1109I | GCAGC | 4 cut(s) | 180, 220, 373, 733 |
| LweI | GCATC | 2 cut(s) | 226, 479 |
| MaeI | CTAG | 5 cut(s) | 98, 401, 528, 662, 666 |
| MaeII | ACGT | 2 cut(s) | 14, 71 |
| MaeIII | GTNAC | 1 cut(s) | 349 |
| MalI | GATC | 3 cut(s) | 308, 512, 722 |
| MboI | GATC | 3 cut(s) | 306, 510, 720 |
| MboII | GAAGA | 3 cut(s) | 105, 148, 647 |
| MflI | RGATCY | 1 cut(s) | 720 |
| MhlI | GDGCHC | 1 cut(s) | 535 |
| Mly113I | GGCGCC | 1 cut(s) | 300 |
| MlyI | GAGTC | 1 cut(s) | 346 |
| MmeI | TCCRAC | 2 cut(s) | 273, 370 |
| MslI | CAYNNNNRTG | 1 cut(s) | 279 |
| MspA1I | CMGCKG | 2 cut(s) | 133, 347 |
| MspI | CCGG | 4 cut(s) | 297, 375, 514, 539 |
| MspR9I | CCNGG | 3 cut(s) | 53, 595, 777 |
| MvaI | CCWGG | 3 cut(s) | 53, 595, 777 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 53, 62, 84, 119, 230 |
| NarI | GGCGCC | 1 cut(s) | 300 |
| NdeII | GATC | 3 cut(s) | 306, 510, 720 |
| NheI | GCTAGC | 1 cut(s) | 400 |
| NlaIII | CATG | 4 cut(s) | 25, 389, 428, 580 |
| NlaIV | GGNNCC | 3 cut(s) | 301, 533, 558 |
| NmuCI | GTSAC | 1 cut(s) | 349 |
| NspI | RCATGY | 2 cut(s) | 389, 428 |
| PasI | CCCWGGG | 1 cut(s) | 594 |
| PceI | AGGCCT | 1 cut(s) | 224 |
| PciI | ACATGT | 2 cut(s) | 385, 424 |
| PflFI | GACNNNGTC | 1 cut(s) | 13 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 448 |
| PkrI | GCNGC | 6 cut(s) | 77, 167, 170, 235, 363, 748 |
| PleI | GAGTC | 1 cut(s) | 346 |
| PluTI | GGCGCC | 1 cut(s) | 303 |
| PpsI | GAGTC | 1 cut(s) | 346 |
| Ppu21I | YACGTR | 1 cut(s) | 72 |
| PpuMI | RGGWCCY | 1 cut(s) | 557 |
| PscI | ACATGT | 2 cut(s) | 385, 424 |
| PsiI | TTATAA | 1 cut(s) | 603 |
| Psp5II | RGGWCCY | 1 cut(s) | 557 |
| Psp6I | CCWGG | 3 cut(s) | 51, 593, 775 |
| PspFI | CCCAGC | 2 cut(s) | 470, 534 |
| PspGI | CCWGG | 3 cut(s) | 51, 593, 775 |
| PspN4I | GGNNCC | 3 cut(s) | 301, 533, 558 |
| PspOMI | GGGCCC | 1 cut(s) | 531 |
| PspPI | GGNCC | 3 cut(s) | 531, 532, 557 |
| PspPPI | RGGWCCY | 1 cut(s) | 557 |
| PstI | CTGCAG | 1 cut(s) | 238 |
| PstNI | CAGNNNCTG | 2 cut(s) | 116, 746 |
| PsuI | RGATCY | 1 cut(s) | 720 |
| PsyI | GACNNNGTC | 1 cut(s) | 13 |
| RsaI | GTAC | 5 cut(s) | 70, 384, 423, 678, 692 |
| RsaNI | GTAC | 5 cut(s) | 69, 383, 422, 677, 691 |
| RseI | CAYNNNNRTG | 1 cut(s) | 279 |
| SatI | GCNGC | 6 cut(s) | 76, 166, 169, 234, 362, 747 |
| Sau3AI | GATC | 3 cut(s) | 306, 510, 720 |
| Sau96I | GGNCC | 3 cut(s) | 531, 532, 557 |
| SchI | GAGTC | 1 cut(s) | 346 |
| ScrFI | CCNGG | 3 cut(s) | 53, 595, 777 |
| SduI | GDGCHC | 1 cut(s) | 535 |
| SfaNI | GCATC | 2 cut(s) | 226, 479 |
| SfcI | CTRYAG | 1 cut(s) | 234 |
| SfoI | GGCGCC | 1 cut(s) | 301 |
| SinI | GGWCC | 1 cut(s) | 557 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 279 |
| SseBI | AGGCCT | 1 cut(s) | 224 |
| SsiI | CCGC | 6 cut(s) | 34, 76, 131, 165, 195, 347 |
| SspDI | GGCGCC | 1 cut(s) | 299 |
| SspMI | CTAG | 5 cut(s) | 98, 401, 528, 662, 666 |
| StuI | AGGCCT | 1 cut(s) | 224 |
| StyD4I | CCNGG | 3 cut(s) | 51, 593, 775 |
| StyI | CCWWGG | 1 cut(s) | 527 |
| TaaI | ACNGT | 6 cut(s) | 118, 278, 409, 421, 448, 681 |
| TaiI | ACGT | 2 cut(s) | 17, 74 |
| TaqI | TCGA | 2 cut(s) | 227, 772 |
| TaqII | GACCGA | 1 cut(s) | 74 |
| TatI | WGTACW | 2 cut(s) | 382, 421 |
| TauI | GCSGC | 2 cut(s) | 78, 168 |
| TscAI | CASTG | 2 cut(s) | 283, 686 |
| TseFI | GTSAC | 1 cut(s) | 349 |
| TseI | GCWGC | 4 cut(s) | 168, 233, 361, 746 |
| Tsp45I | GTSAC | 1 cut(s) | 349 |
| TspDTI | ATGAA | 2 cut(s) | 93, 234 |
| TspRI | CASTG | 2 cut(s) | 283, 686 |
| Tth111I | GACNNNGTC | 1 cut(s) | 13 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 448 |
| VpaK11BI | GGWCC | 1 cut(s) | 557 |
| XceI | RCATGY | 2 cut(s) | 389, 428 |
| XmaJI | CCTAGG | 1 cut(s) | 527 |
| XmiI | GTMKAC | 1 cut(s) | 208 |
| XspI | CTAG | 5 cut(s) | 98, 401, 528, 662, 666 |