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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 448 |
| AccII | CGCG | 1 cut(s) | 389 |
| AccIII | TCCGGA | 1 cut(s) | 19 |
| AciI | CCGC | 8 cut(s) | 260, 333, 381, 389, 448, 477, 509, 517 |
| AcsI | RAATTY | 1 cut(s) | 469 |
| AcuI | CTGAAG | 1 cut(s) | 333 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 511 |
| AgeI | ACCGGT | 1 cut(s) | 44 |
| AgsI | TTSAA | 1 cut(s) | 464 |
| AhlI | ACTAGT | 1 cut(s) | 232 |
| AjnI | CCWGG | 1 cut(s) | 372 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 222, 254 |
| AluBI | AGCT | 1 cut(s) | 132 |
| AluI | AGCT | 1 cut(s) | 132 |
| Alw26I | GTCTC | 1 cut(s) | 19 |
| Aor13HI | TCCGGA | 1 cut(s) | 19 |
| ApoI | RAATTY | 1 cut(s) | 469 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 91, 123 |
| AsiGI | ACCGGT | 1 cut(s) | 44 |
| AspLEI | GCGC | 1 cut(s) | 389 |
| AspS9I | GGNCC | 1 cut(s) | 514 |
| AsuHPI | GGTGA | 2 cut(s) | 59, 361 |
| AvaII | GGWCC | 1 cut(s) | 514 |
| AxyI | CCTNAGG | 1 cut(s) | 73 |
| BccI | CCATC | 2 cut(s) | 271, 487 |
| BciT130I | CCWGG | 1 cut(s) | 374 |
| BcoDI | GTCTC | 1 cut(s) | 19 |
| BcuI | ACTAGT | 1 cut(s) | 232 |
| BfaI | CTAG | 2 cut(s) | 233, 363 |
| BisI | GCNGC | 3 cut(s) | 381, 449, 477 |
| BlsI | GCNGC | 3 cut(s) | 382, 450, 478 |
| Bme1390I | CCNGG | 1 cut(s) | 374 |
| Bme18I | GGWCC | 1 cut(s) | 514 |
| BmgT120I | GGNCC | 1 cut(s) | 514 |
| BmiI | GGNNCC | 1 cut(s) | 79 |
| BmrFI | CCNGG | 1 cut(s) | 374 |
| BmsI | GCATC | 2 cut(s) | 346, 375 |
| BpmI | CTGGAG | 2 cut(s) | 42, 166 |
| BsaJI | CCNNGG | 1 cut(s) | 372 |
| BsaWI | WCCGGW | 2 cut(s) | 19, 44 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 164, 194 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 511 |
| Bse118I | RCCGGY | 1 cut(s) | 44 |
| Bse1I | ACTGG | 2 cut(s) | 59, 183 |
| Bse21I | CCTNAGG | 1 cut(s) | 73 |
| BseAI | TCCGGA | 1 cut(s) | 19 |
| BseBI | CCWGG | 1 cut(s) | 374 |
| BseDI | CCNNGG | 1 cut(s) | 372 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 511 |
| BseMII | CTCAG | 1 cut(s) | 87 |
| BseNI | ACTGG | 2 cut(s) | 59, 183 |
| BseYI | CCCAGC | 1 cut(s) | 336 |
| Bsh1236I | CGCG | 1 cut(s) | 389 |
| Bsh1285I | CGRYCG | 1 cut(s) | 270 |
| BshTI | ACCGGT | 1 cut(s) | 44 |
| BsiEI | CGRYCG | 1 cut(s) | 270 |
| BsiSI | CCGG | 2 cut(s) | 20, 45 |
| BslFI | GGGAC | 1 cut(s) | 47 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 511 |
| BsmAI | GTCTC | 1 cut(s) | 19 |
| BsmFI | GGGAC | 1 cut(s) | 47 |
| BsmI | GAATGC | 1 cut(s) | 436 |
| Bsp13I | TCCGGA | 1 cut(s) | 19 |
| Bsp143I | GATC | 1 cut(s) | 191 |
| BspACI | CCGC | 8 cut(s) | 260, 333, 381, 389, 448, 477, 509, 517 |
| BspCNI | CTCAG | 1 cut(s) | 86 |
| BspEI | TCCGGA | 1 cut(s) | 19 |
| BspFNI | CGCG | 1 cut(s) | 389 |
| BspLI | GGNNCC | 1 cut(s) | 79 |
| BspQI | GCTCTTC | 1 cut(s) | 438 |
| BsrBI | CCGCTC | 1 cut(s) | 448 |
| BsrFI | RCCGGY | 1 cut(s) | 44 |
| BsrI | ACTGG | 2 cut(s) | 59, 183 |
| BssAI | RCCGGY | 1 cut(s) | 44 |
| BssECI | CCNNGG | 1 cut(s) | 372 |
| BssMI | GATC | 1 cut(s) | 191 |
| Bst2UI | CCWGG | 1 cut(s) | 374 |
| Bst4CI | ACNGT | 2 cut(s) | 86, 212 |
| Bst6I | CTCTTC | 1 cut(s) | 438 |
| BstC8I | GCNNGC | 3 cut(s) | 204, 352, 385 |
| BstDEI | CTNAG | 1 cut(s) | 73 |
| BstEII | GGTNACC | 1 cut(s) | 47 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 509 |
| BstFNI | CGCG | 1 cut(s) | 389 |
| BstHHI | GCGC | 1 cut(s) | 389 |
| BstKTI | GATC | 1 cut(s) | 194 |
| BstMAI | GTCTC | 1 cut(s) | 19 |
| BstMBI | GATC | 1 cut(s) | 191 |
| BstMCI | CGRYCG | 1 cut(s) | 270 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 356, 386 |
| BstNI | CCWGG | 1 cut(s) | 374 |
| BstPI | GGTNACC | 1 cut(s) | 47 |
| BstSCI | CCNGG | 1 cut(s) | 372 |
| BstUI | CGCG | 1 cut(s) | 389 |
| Bsu36I | CCTNAGG | 1 cut(s) | 73 |
| BtgZI | GCGATG | 1 cut(s) | 369 |
| Cac8I | GCNNGC | 3 cut(s) | 204, 352, 385 |
| CfoI | GCGC | 1 cut(s) | 389 |
| Cfr10I | RCCGGY | 1 cut(s) | 44 |
| Cfr13I | GGNCC | 1 cut(s) | 514 |
| CseI | GACGC | 1 cut(s) | 348 |
| CspAI | ACCGGT | 1 cut(s) | 44 |
| CviAII | CATG | 1 cut(s) | 485 |
| CviJI | RGCY | 7 cut(s) | 80, 132, 340, 350, 380, 451, 503 |
| CviKI_1 | RGCY | 7 cut(s) | 80, 132, 340, 350, 380, 451, 503 |
| DdeI | CTNAG | 1 cut(s) | 73 |
| DpnI | GATC | 1 cut(s) | 193 |
| DpnII | GATC | 1 cut(s) | 191 |
| Eam1104I | CTCTTC | 1 cut(s) | 438 |
| EarI | CTCTTC | 1 cut(s) | 438 |
| EciI | GGCGGA | 1 cut(s) | 249 |
| Eco47I | GGWCC | 1 cut(s) | 514 |
| Eco57I | CTGAAG | 1 cut(s) | 333 |
| Eco81I | CCTNAGG | 1 cut(s) | 73 |
| Eco91I | GGTNACC | 1 cut(s) | 47 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 509 |
| EcoO65I | GGTNACC | 1 cut(s) | 47 |
| EcoRI | GAATTC | 1 cut(s) | 469 |
| EcoRII | CCWGG | 1 cut(s) | 372 |
| FaeI | CATG | 1 cut(s) | 488 |
| FaiI | YATR | 3 cut(s) | 440, 481, 486 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 435, 467 |
| FaqI | GGGAC | 1 cut(s) | 47 |
| FatI | CATG | 1 cut(s) | 484 |
| Fnu4HI | GCNGC | 3 cut(s) | 381, 449, 477 |
| Fsp4HI | GCNGC | 3 cut(s) | 381, 449, 477 |
| FspBI | CTAG | 2 cut(s) | 233, 363 |
| GlaI | GCGC | 1 cut(s) | 388 |
| GluI | GCNGC | 3 cut(s) | 381, 449, 477 |
| GsaI | CCCAGC | 1 cut(s) | 340 |
| GsuI | CTGGAG | 2 cut(s) | 42, 166 |
| HapII | CCGG | 2 cut(s) | 20, 45 |
| HgaI | GACGC | 1 cut(s) | 348 |
| HhaI | GCGC | 1 cut(s) | 389 |
| Hin1II | CATG | 1 cut(s) | 488 |
| Hin6I | GCGC | 1 cut(s) | 387 |
| HinP1I | GCGC | 1 cut(s) | 387 |
| HincII | GTYRAC | 1 cut(s) | 110 |
| HindII | GTYRAC | 1 cut(s) | 110 |
| HinfI | GANTC | 1 cut(s) | 68 |
| HpaII | CCGG | 2 cut(s) | 20, 45 |
| HphI | GGTGA | 2 cut(s) | 59, 361 |
| Hpy166II | GTNNAC | 2 cut(s) | 110, 154 |
| Hpy188I | TCNGA | 1 cut(s) | 226 |
| Hpy188III | TCNNGA | 4 cut(s) | 20, 75, 241, 425 |
| Hpy8I | GTNNAC | 2 cut(s) | 110, 154 |
| HpyAV | CCTTC | 3 cut(s) | 45, 308, 470 |
| HpyCH4III | ACNGT | 2 cut(s) | 86, 212 |
| HpyCH4IV | ACGT | 2 cut(s) | 112, 156 |
| HpyCH4V | TGCA | 1 cut(s) | 206 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 356, 386 |
| HpyF3I | CTNAG | 1 cut(s) | 73 |
| HpySE526I | ACGT | 2 cut(s) | 112, 156 |
| Hsp92II | CATG | 1 cut(s) | 488 |
| HspAI | GCGC | 1 cut(s) | 387 |
| Kpn2I | TCCGGA | 1 cut(s) | 19 |
| Kzo9I | GATC | 1 cut(s) | 191 |
| LguI | GCTCTTC | 1 cut(s) | 438 |
| LmnI | GCTCC | 1 cut(s) | 77 |
| LweI | GCATC | 2 cut(s) | 346, 375 |
| MaeI | CTAG | 2 cut(s) | 233, 363 |
| MaeII | ACGT | 2 cut(s) | 112, 156 |
| MaeIII | GTNAC | 3 cut(s) | 47, 185, 391 |
| MalI | GATC | 1 cut(s) | 193 |
| MbiI | CCGCTC | 1 cut(s) | 448 |
| MboI | GATC | 1 cut(s) | 191 |
| MboII | GAAGA | 2 cut(s) | 455, 502 |
| MluCI | AATT | 2 cut(s) | 160, 469 |
| MnlI | CCTC | 6 cut(s) | 82, 113, 190, 263, 284, 505 |
| MroI | TCCGGA | 1 cut(s) | 19 |
| MseI | TTAA | 3 cut(s) | 128, 159, 453 |
| MspA1I | CMGCKG | 1 cut(s) | 519 |
| MspI | CCGG | 2 cut(s) | 20, 45 |
| MspR9I | CCNGG | 1 cut(s) | 374 |
| Mva1269I | GAATGC | 1 cut(s) | 436 |
| MvaI | CCWGG | 1 cut(s) | 374 |
| MvnI | CGCG | 1 cut(s) | 389 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 356, 386 |
| NdeII | GATC | 1 cut(s) | 191 |
| NlaIII | CATG | 1 cut(s) | 488 |
| NlaIV | GGNNCC | 1 cut(s) | 79 |
| NmuCI | GTSAC | 1 cut(s) | 47 |
| PciSI | GCTCTTC | 1 cut(s) | 438 |
| PctI | GAATGC | 1 cut(s) | 436 |
| PfeI | GAWTC | 1 cut(s) | 68 |
| PinAI | ACCGGT | 1 cut(s) | 44 |
| PkrI | GCNGC | 3 cut(s) | 382, 450, 478 |
| Psp6I | CCWGG | 1 cut(s) | 372 |
| PspEI | GGTNACC | 1 cut(s) | 47 |
| PspFI | CCCAGC | 1 cut(s) | 336 |
| PspGI | CCWGG | 1 cut(s) | 372 |
| PspN4I | GGNNCC | 1 cut(s) | 79 |
| PspPI | GGNCC | 1 cut(s) | 514 |
| SapI | GCTCTTC | 1 cut(s) | 438 |
| SaqAI | TTAA | 3 cut(s) | 128, 159, 453 |
| SatI | GCNGC | 3 cut(s) | 381, 449, 477 |
| Sau3AI | GATC | 1 cut(s) | 191 |
| Sau96I | GGNCC | 1 cut(s) | 514 |
| ScrFI | CCNGG | 1 cut(s) | 374 |
| SetI | ASST | 6 cut(s) | 115, 134, 153, 159, 182, 378 |
| SfaNI | GCATC | 2 cut(s) | 346, 375 |
| SinI | GGWCC | 1 cut(s) | 514 |
| SmlI | CTYRAG | 1 cut(s) | 9 |
| SmoI | CTYRAG | 1 cut(s) | 9 |
| SpeI | ACTAGT | 1 cut(s) | 232 |
| Sse9I | AATT | 2 cut(s) | 160, 469 |
| SsiI | CCGC | 8 cut(s) | 260, 333, 381, 389, 448, 477, 509, 517 |
| SspMI | CTAG | 2 cut(s) | 233, 363 |
| StyD4I | CCNGG | 1 cut(s) | 372 |
| TaaI | ACNGT | 2 cut(s) | 86, 212 |
| TaiI | ACGT | 2 cut(s) | 115, 159 |
| TaqI | TCGA | 2 cut(s) | 266, 298 |
| TaqII | GACCGA | 1 cut(s) | 284 |
| TasI | AATT | 2 cut(s) | 160, 469 |
| TauI | GCSGC | 3 cut(s) | 383, 451, 479 |
| TfiI | GAWTC | 1 cut(s) | 68 |
| Tru1I | TTAA | 3 cut(s) | 128, 159, 453 |
| Tru9I | TTAA | 3 cut(s) | 128, 159, 453 |
| TseFI | GTSAC | 1 cut(s) | 47 |
| Tsp45I | GTSAC | 1 cut(s) | 47 |
| VpaK11BI | GGWCC | 1 cut(s) | 514 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 509 |
| XapI | RAATTY | 1 cut(s) | 469 |
| XspI | CTAG | 2 cut(s) | 233, 363 |