Rmu_sc0001719.1_g000022

Retrotransposon gag protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001719.1
OG0000057
Physical Location & Seq
Forward (+)
125274 .. 126422
1149 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001719.1_g000022.1.cds

Sequence Viewer

Length: 819 bp
atggagaatattgaaaatcatcgcaagaagatagctgccgattttgaaaaggaaactgcgaaaacagacccactcatacgcgaactagacaagcgcattacccgacatgcagaggatactaaccaacaaatcgcacaatcagagaatgcagtgagggctcatgccacgggtcttcgcaaggatagcgctaacctcgcaaccgaggtggccatgcaaagagccgaattgaaccaggcaagagaagtgttgaacaaagctttaggggatcctaacgctatccttggctcccttggccagccgtctgaaaacatatatcaagagctgccaggaagctattatgagattgaccagactggtaacccgatcaagataacagccttggccaaagagacgcctatgccagcagtgactcttcagcaaccagctacaacccgcattgtacatgtaggagaggggacagcgattgcaaaccaagcgatacccttgcaggctgctcgccatactgtggcgacaccccctcctcctcctccgggcccggaatatgtaagacgtgaagaggtagaggagatgatcaggctggctaatcctatggcccaactggatggggtcaatgagggacctttcccgctgcatataatgctcgcgccctttcccaagggttataaaaatatcatattttcgacttttttaggggaagacaccgaagatgcagcaacccatttggccaggtttagggtgcaatgcggccagtaccagaatgatgatatcctcaaatgcaggatctttggcacttctctttcgggagctgcctttagatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotrans_gag

Protein Analysis

272

Amino Acids

29.97

Weight (kDa)

5.71

Isoelectric Point (pI)

44.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000057)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00341 FvH4_2g18201 FvH4_2g24491 FvH4_2g24511 FvH4_3g22961 FvH4_3g33532 FvH4_3g33534 FvH4_4g05275 FvH4_4g12372 FvH4_5g20143 FvH4_7g12392
pyrus_communis pycom12g16120
rosa_chinensis RchiOBHm_Chr5g0023531 RchiOBHm_Chr6g0271201
rosa_laevigata RLG00000030639
rosa_multiflora Rmu_co8016136.1_g000001 Rmu_co8027180.1_g000001 Rmu_co8041016.1_g000001 Rmu_co8052812.1_g000001 Rmu_co8152468.1_g000001 Rmu_co8165796.1_g000001 Rmu_co8170214.1_g000001 Rmu_co8227433.1_g000001 Rmu_co8241379.1_g000001 Rmu_co8254305.1_g000001 Rmu_co8258647.1_g000001 Rmu_co8265535.1_g000002 Rmu_co8276845.1_g000001 Rmu_co8296303.1_g000001 Rmu_co8304827.1_g000001 Rmu_co8308345.1_g000001 Rmu_co8320493.1_g000002 Rmu_co8326955.1_g000001 Rmu_co8331007.1_g000001 Rmu_co8335625.1_g000001 Rmu_co8354465.1_g000001 Rmu_co8360201.1_g000001 Rmu_co8362075.1_g000002 Rmu_co8362991.1_g000001 Rmu_co8364567.1_g000001 Rmu_co8365273.1_g000001 Rmu_co8387267.1_g000001 Rmu_co8395251.1_g000002 Rmu_co8396677.1_g000001 Rmu_co8457659.1_g000001 Rmu_co8478117.1_g000001 Rmu_co8487163.1_g000001 Rmu_co8498169.1_g000001 Rmu_sc0000029.1_g000022 Rmu_sc0000063.1_g000007 Rmu_sc0000112.1_g000020 Rmu_sc0000146.1_g000006 Rmu_sc0000245.1_g000015 Rmu_sc0000276.1_g000036 Rmu_sc0000334.1_g000033 Rmu_sc0000334.1_g000034 Rmu_sc0000434.1_g000019 Rmu_sc0000441.1_g000118 Rmu_sc0000533.1_g000054 Rmu_sc0000533.1_g000055 Rmu_sc0000595.1_g000041 Rmu_sc0000663.1_g000019 Rmu_sc0000673.1_g000002 Rmu_sc0000698.1_g000102 Rmu_sc0000745.1_g000007 Rmu_sc0000768.1_g000018 Rmu_sc0000811.1_g000012 Rmu_sc0000826.1_g000009 Rmu_sc0000826.1_g000011 Rmu_sc0001051.1_g000042 Rmu_sc0001051.1_g000043 Rmu_sc0001148.1_g000014 Rmu_sc0001198.1_g000021 Rmu_sc0001227.1_g000008 Rmu_sc0001250.1_g000028 Rmu_sc0001395.1_g000019 Rmu_sc0001395.1_g000020 Rmu_sc0001396.1_g000002 Rmu_sc0001424.1_g000007 Rmu_sc0001455.1_g000025 Rmu_sc0001455.1_g000029 Rmu_sc0001499.1_g000036 Rmu_sc0001539.1_g000001 Rmu_sc0001562.1_g000027 Rmu_sc0001563.1_g000024 Rmu_sc0001719.1_g000022 Rmu_sc0001796.1_g000008 Rmu_sc0001884.1_g000022 Rmu_sc0001903.1_g000018 Rmu_sc0002041.1_g000012 Rmu_sc0002096.1_g000002 Rmu_sc0002126.1_g000027 Rmu_sc0002181.1_g000010 Rmu_sc0002259.1_g000004 Rmu_sc0002279.1_g000018 Rmu_sc0002312.1_g000060 Rmu_sc0002383.1_g000011 Rmu_sc0002401.1_g000012 Rmu_sc0002509.1_g000028 Rmu_sc0002569.1_g000008 Rmu_sc0002587.1_g000037 Rmu_sc0002665.1_g000006 Rmu_sc0002698.1_g000018 Rmu_sc0002724.1_g000002 Rmu_sc0002727.1_g000011 Rmu_sc0002927.1_g000055 Rmu_sc0002927.1_g000056 Rmu_sc0002943.1_g000009 Rmu_sc0002943.1_g000023 Rmu_sc0002998.1_g000001 Rmu_sc0003089.1_g000036 Rmu_sc0003127.1_g000022 Rmu_sc0003127.1_g000040 Rmu_sc0003207.1_g000010 Rmu_sc0003207.1_g000011 Rmu_sc0003275.1_g000034 Rmu_sc0003275.1_g000036 Rmu_sc0003337.1_g000047 Rmu_sc0003376.1_g000004 Rmu_sc0003522.1_g000024 Rmu_sc0003613.1_g000007 Rmu_sc0003708.1_g000026 Rmu_sc0003784.1_g000018 Rmu_sc0004079.1_g000005 Rmu_sc0004092.1_g000017 Rmu_sc0004168.1_g000058 Rmu_sc0004174.1_g000019 Rmu_sc0004199.1_g000049 Rmu_sc0004230.1_g000005 Rmu_sc0004283.1_g000021 Rmu_sc0004283.1_g000022 Rmu_sc0004314.1_g000017 Rmu_sc0004538.1_g000006 Rmu_sc0004542.1_g000011 Rmu_sc0004602.1_g000024 Rmu_sc0004641.1_g000006 Rmu_sc0004862.1_g000011 Rmu_sc0004941.1_g000043 Rmu_sc0005003.1_g000003 Rmu_sc0005112.1_g000018 Rmu_sc0005144.1_g000014 Rmu_sc0005266.1_g000014 Rmu_sc0005418.1_g000004 Rmu_sc0005627.1_g000006 Rmu_sc0005652.1_g000022 Rmu_sc0005747.1_g000032 Rmu_sc0005982.1_g000013 Rmu_sc0006050.1_g000017 Rmu_sc0006059.1_g000035 Rmu_sc0006128.1_g000002 Rmu_sc0006228.1_g000009 Rmu_sc0006243.1_g000009 Rmu_sc0006300.1_g000004 Rmu_sc0006463.1_g000007 Rmu_sc0006579.1_g000016 Rmu_sc0006595.1_g000011 Rmu_sc0006624.1_g000006 Rmu_sc0006624.1_g000007 Rmu_sc0006624.1_g000008 Rmu_sc0006674.1_g000025 Rmu_sc0006792.1_g000013 Rmu_sc0006872.1_g000022 Rmu_sc0006984.1_g000009 Rmu_sc0006984.1_g000010 Rmu_sc0006986.1_g000011 Rmu_sc0007016.1_g000001 Rmu_sc0007221.1_g000006 Rmu_sc0007222.1_g000005 Rmu_sc0007222.1_g000006 Rmu_sc0007251.1_g000001 Rmu_sc0007777.1_g000037 Rmu_sc0007826.1_g000018 Rmu_sc0008053.1_g000015 Rmu_sc0008502.1_g000006 Rmu_sc0008659.1_g000009 Rmu_sc0009045.1_g000009 Rmu_sc0009045.1_g000010 Rmu_sc0009060.1_g000012 Rmu_sc0009360.1_g000024 Rmu_sc0009431.1_g000001 Rmu_sc0009606.1_g000014 Rmu_sc0009774.1_g000001 Rmu_sc0009844.1_g000014 Rmu_sc0010313.1_g000001 Rmu_sc0010454.1_g000008 Rmu_sc0010543.1_g000016 Rmu_sc0010900.1_g000002 Rmu_sc0010925.1_g000009 Rmu_sc0011136.1_g000012 Rmu_sc0011534.1_g000004 Rmu_sc0011809.1_g000007 Rmu_sc0011917.1_g000005 Rmu_sc0012103.1_g000001 Rmu_sc0012287.1_g000001 Rmu_sc0012303.1_g000007 Rmu_sc0012344.1_g000009 Rmu_sc0012674.1_g000007 Rmu_sc0012686.1_g000001 Rmu_sc0012742.1_g000005 Rmu_sc0012746.1_g000026 Rmu_sc0012746.1_g000027 Rmu_sc0013419.1_g000008 Rmu_sc0014866.1_g000004 Rmu_sc0015325.1_g000011 Rmu_sc0015486.1_g000005 Rmu_sc0015651.1_g000002 Rmu_sc0015783.1_g000001 Rmu_sc0016387.1_g000009 Rmu_sc0017518.1_g000005 Rmu_sc0018480.1_g000001 Rmu_sc0018537.1_g000003 Rmu_sc0019200.1_g000002 Rmu_sc0019544.1_g000014 Rmu_sc0019544.1_g000015 Rmu_sc0019873.1_g000001 Rmu_sc0020392.1_g000001 Rmu_sc0020466.1_g000001 Rmu_sc0022008.1_g000001 Rmu_sc0022008.1_g000002 Rmu_sc0022274.1_g000001 Rmu_sc0023644.1_g000005 Rmu_sc0024657.1_g000001 Rmu_sc0024721.1_g000003 Rmu_sc0025790.1_g000001 Rmu_sc0026866.1_g000001 Rmu_sc0027363.1_g000002 Rmu_sc0027485.1_g000001 Rmu_sc0028394.1_g000001 Rmu_sc0033121.1_g000002 Rmu_sc0033838.1_g000001 Rmu_sc0035536.1_g000001 Rmu_sc0036296.1_g000001 Rmu_sc0036297.1_g000001 Rmu_sc0036298.1_g000001 Rmu_sc0036797.1_g000001 Rmu_sc0037010.1_g000001 Rmu_sc0037444.1_g000002 Rmu_sc0039012.1_g000002 Rmu_sc0040172.1_g000001 Rmu_sc0042083.1_g000001 Rmu_ssc0000018.1_g000001 Rmu_ssc0000171.1_g000032 Rmu_ssc0000213.1_g000064 Rmu_ssc0000213.1_g000096 Rmu_ssc0000262.1_g000017 Rmu_ssc0000295.1_g000036 Rmu_ssc0000343.1_g000008 Rmu_ssc0000398.1_g000003 Rmu_ssc0000400.1_g000085 Rmu_ssc0000438.1_g000007 Rmu_ssc0000478.1_g000003
rosa_roxburghii Rroxscaffold_166G00440710 Rroxscaffold_166G00440720 Rroxscaffold_174G00435300 Rroxscaffold_174G00435310 Rroxscaffold_177G00434290 Rroxscaffold_177G00434300 Rroxscaffold_177G00434310 Rroxscaffold_178G00437310 Rroxscaffold_1G00002500 Rroxscaffold_1G00004730 Rroxscaffold_1G00008660 Rroxscaffold_1G00008670 Rroxscaffold_1G00008680 Rroxscaffold_1G00008690 Rroxscaffold_1G00010260 Rroxscaffold_1G00015670 Rroxscaffold_1G00021140 Rroxscaffold_1G00024380 Rroxscaffold_1G00032420 Rroxscaffold_1G00050600 Rroxscaffold_1G00050610 Rroxscaffold_1G00055970 Rroxscaffold_1G00066220 Rroxscaffold_2G00085370 Rroxscaffold_2G00092350 Rroxscaffold_2G00092360 Rroxscaffold_2G00093350 Rroxscaffold_2G00097090 Rroxscaffold_2G00108040 Rroxscaffold_2G00109970 Rroxscaffold_2G00111470 Rroxscaffold_2G00111480 Rroxscaffold_2G00112000 Rroxscaffold_2G00112060 Rroxscaffold_2G00129160 Rroxscaffold_2G00132340 Rroxscaffold_2G00136720 Rroxscaffold_2G00152910 Rroxscaffold_3G00223160 Rroxscaffold_3G00223170 Rroxscaffold_3G00223520 Rroxscaffold_3G00230980 Rroxscaffold_3G00245030 Rroxscaffold_3G00259050 Rroxscaffold_3G00259060 Rroxscaffold_3G00259070 Rroxscaffold_3G00267470 Rroxscaffold_3G00272040 Rroxscaffold_3G00272440 Rroxscaffold_3G00272450 Rroxscaffold_4G00285860 Rroxscaffold_4G00285870 Rroxscaffold_4G00294380 Rroxscaffold_4G00294390 Rroxscaffold_4G00297890 Rroxscaffold_4G00298150 Rroxscaffold_4G00303090 Rroxscaffold_4G00306480 Rroxscaffold_4G00306680 Rroxscaffold_4G00310490 Rroxscaffold_4G00310630 Rroxscaffold_4G00310670 Rroxscaffold_4G00310680 Rroxscaffold_4G00310690 Rroxscaffold_4G00317930 Rroxscaffold_4G00320190 Rroxscaffold_4G00323370 Rroxscaffold_4G00323380 Rroxscaffold_4G00324200 Rroxscaffold_4G00331220 Rroxscaffold_5G00339230 Rroxscaffold_5G00341260 Rroxscaffold_5G00343120 Rroxscaffold_5G00345440 Rroxscaffold_5G00345450 Rroxscaffold_5G00353190 Rroxscaffold_5G00353420 Rroxscaffold_5G00356560 Rroxscaffold_5G00359790 Rroxscaffold_5G00381710 Rroxscaffold_5G00381720 Rroxscaffold_5G00386250 Rroxscaffold_5G00387520 Rroxscaffold_6G00390180 Rroxscaffold_6G00392810 Rroxscaffold_6G00401230 Rroxscaffold_6G00402640 Rroxscaffold_6G00405640 Rroxscaffold_6G00405650 Rroxscaffold_6G00405850 Rroxscaffold_6G00405860 Rroxscaffold_6G00412020 Rroxscaffold_6G00415690 Rroxscaffold_6G00415700 Rroxscaffold_7G00168110 Rroxscaffold_7G00178950 Rroxscaffold_7G00178960 Rroxscaffold_7G00193670 Rroxscaffold_7G00203020 Rroxscaffold_7G00203340 Rroxscaffold_7G00203550 Rroxscaffold_7G00207220 Rroxscaffold_7G00207250 Rroxscaffold_7G00207430 Rroxscaffold_7G00209310 Rroxscaffold_7G00211530 Rroxscaffold_7G00211540 Rroxscaffold_7G00214160 Rroxscaffold_7G00216040 Rroxscaffold_7G00216800
rosa_samantha Rh1AG276800 Rh1CG260400 Rh3CG366700
rosa_wichuraiana Rw1G001440 Rw3G029210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 663
AccB7I CCANNNNNTGG 1 cut(s) 505
AccII CGCG 2 cut(s) 81, 644
AciI CCGC 3 cut(s) 433, 626, 744
AclWI GGATC 3 cut(s) 260, 273, 788
AcoI YGGCCR 5 cut(s) 207, 292, 381, 723, 745
AcuI CTGAAG 1 cut(s) 398
AcyI GRCGYC 1 cut(s) 392
AfaI GTAC 2 cut(s) 441, 752
AfeI AGCGCT 1 cut(s) 187
AfiI CCNNNNNNNGG 3 cut(s) 505, 530, 732
AflIII ACRYGT 1 cut(s) 442
AgsI TTSAA 4 cut(s) 14, 47, 229, 250
AjiI CACGTC 1 cut(s) 551
AjnI CCWGG 3 cut(s) 231, 325, 725
AluBI AGCT 6 cut(s) 35, 257, 322, 333, 425, 806
AluI AGCT 6 cut(s) 35, 257, 322, 333, 425, 806
Alw26I GTCTC 1 cut(s) 383
AlwI GGATC 3 cut(s) 260, 273, 788
Aor51HI AGCGCT 1 cut(s) 187
AoxI GGCC 7 cut(s) 207, 292, 381, 532, 591, 723, 745
ApaI GGGCCC 1 cut(s) 536
ApeKI GCWGC 6 cut(s) 35, 322, 491, 628, 710, 806
AspLEI GCGC 3 cut(s) 96, 188, 646
AspS9I GGNCC 4 cut(s) 532, 533, 592, 617
AsuC2I CCSGG 2 cut(s) 531, 536
AvaII GGWCC 1 cut(s) 617
BaeGI GKGCMC 1 cut(s) 536
BalI TGGCCA 4 cut(s) 209, 294, 383, 725
BamHI GGATCC 1 cut(s) 265
BanII GRGCYC 2 cut(s) 160, 536
BbsI GAAGAC 2 cut(s) 164, 702
BbvI GCAGC 6 cut(s) 22, 309, 478, 615, 722, 793
BccI CCATC 1 cut(s) 596
BceAI ACGGC 1 cut(s) 283
BcgI CGANNNNNNTGC 4 cut(s) 466, 476, 500, 510
BciT130I CCWGG 3 cut(s) 233, 327, 727
BciVI GTATCC 1 cut(s) 109
BclI TGATCA 1 cut(s) 570
BcnI CCSGG 2 cut(s) 531, 536
BcoDI GTCTC 1 cut(s) 383
BfaI CTAG 1 cut(s) 86
BfoI RGCGCY 1 cut(s) 189
BfuI GTATCC 1 cut(s) 109
BisI GCNGC 7 cut(s) 36, 323, 492, 629, 711, 745, 807
BlsI GCNGC 7 cut(s) 37, 324, 493, 630, 712, 746, 808
Bme1390I CCNGG 5 cut(s) 233, 327, 531, 536, 727
Bme18I GGWCC 1 cut(s) 617
BmgBI CACGTC 1 cut(s) 551
BmgT120I GGNCC 4 cut(s) 532, 533, 592, 617
BmiI GGNNCC 4 cut(s) 267, 286, 534, 618
BmrFI CCNGG 5 cut(s) 233, 327, 531, 536, 727
BmsI GCATC 1 cut(s) 697
BpiI GAAGAC 2 cut(s) 164, 702
BpuMI CCSGG 2 cut(s) 531, 536
BsaHI GRCGYC 1 cut(s) 392
BsaJI CCNNGG 6 cut(s) 165, 201, 280, 289, 378, 654
BsaXI ACNNNNNCTCC 2 cut(s) 502, 532
Bsc4I CCNNNNNNNGG 3 cut(s) 505, 530, 732
Bse1I ACTGG 3 cut(s) 358, 603, 748
Bse3DI GCAATG 1 cut(s) 746
BseBI CCWGG 3 cut(s) 233, 327, 727
BseDI CCNNGG 6 cut(s) 165, 201, 280, 289, 378, 654
BseGI GGATG 1 cut(s) 607
BseLI CCNNNNNNNGG 3 cut(s) 505, 530, 732
BseMI GCAATG 1 cut(s) 746
BseNI ACTGG 3 cut(s) 358, 603, 748
BseRI GAGGAG 4 cut(s) 510, 513, 516, 578
BseSI GKGCMC 1 cut(s) 536
BseXI GCAGC 6 cut(s) 22, 309, 478, 615, 722, 793
Bsh1236I CGCG 2 cut(s) 81, 644
BshFI GGCC 7 cut(s) 209, 294, 383, 534, 593, 725, 747
BsiSI CCGG 2 cut(s) 530, 536
BslFI GGGAC 2 cut(s) 469, 630
BslI CCNNNNNNNGG 3 cut(s) 505, 530, 732
BsmAI GTCTC 1 cut(s) 383
BsmBI CGTCTC 1 cut(s) 383
BsmFI GGGAC 2 cut(s) 469, 630
BsmI GAATGC 1 cut(s) 151
BsnI GGCC 7 cut(s) 209, 294, 383, 534, 593, 725, 747
Bsp120I GGGCCC 1 cut(s) 532
Bsp1286I GDGCHC 2 cut(s) 160, 536
Bsp1407I TGTACA 1 cut(s) 439
Bsp143I GATC 4 cut(s) 265, 363, 570, 780
BspACI CCGC 3 cut(s) 433, 626, 744
BspANI GGCC 7 cut(s) 209, 294, 383, 534, 593, 725, 747
BspFNI CGCG 2 cut(s) 81, 644
BspLI GGNNCC 4 cut(s) 267, 286, 534, 618
BspPI GGATC 3 cut(s) 260, 273, 788
BsrDI GCAATG 1 cut(s) 746
BsrGI TGTACA 1 cut(s) 439
BsrI ACTGG 3 cut(s) 358, 603, 748
BssECI CCNNGG 6 cut(s) 165, 201, 280, 289, 378, 654
BssMI GATC 4 cut(s) 265, 363, 570, 780
BssNI GRCGYC 1 cut(s) 392
BssT1I CCWWGG 4 cut(s) 280, 289, 378, 654
Bst2UI CCWGG 3 cut(s) 233, 327, 727
Bst4CI ACNGT 1 cut(s) 505
Bst6I CTCTTC 2 cut(s) 417, 549
BstACI GRCGYC 1 cut(s) 392
BstAPI GCANNNNNTGC 1 cut(s) 637
BstAUI TGTACA 1 cut(s) 439
BstC8I GCNNGC 6 cut(s) 296, 402, 489, 496, 579, 642
BstDSI CCRYGG 1 cut(s) 165
BstEII GGTNACC 1 cut(s) 356
BstF5I GGATG 1 cut(s) 607
BstFNI CGCG 2 cut(s) 81, 644
BstH2I RGCGCY 1 cut(s) 189
BstHHI GCGC 3 cut(s) 96, 188, 646
BstKTI GATC 4 cut(s) 268, 366, 573, 783
BstMAI GTCTC 1 cut(s) 383
BstMBI GATC 4 cut(s) 265, 363, 570, 780
BstMWI GCNNNNNNNGC 6 cut(s) 155, 183, 194, 291, 473, 637
BstNI CCWGG 3 cut(s) 233, 327, 727
BstNSI RCATGY 2 cut(s) 110, 446
BstPI GGTNACC 1 cut(s) 356
BstSCI CCNGG 5 cut(s) 231, 325, 529, 534, 725
BstSLI GKGCMC 1 cut(s) 536
BstUI CGCG 2 cut(s) 81, 644
BstV1I GCAGC 6 cut(s) 22, 309, 478, 615, 722, 793
BstV2I GAAGAC 2 cut(s) 164, 702
BstX2I RGATCY 2 cut(s) 265, 780
BstXI CCANNNNNNTGG 1 cut(s) 602
BstYI RGATCY 2 cut(s) 265, 780
BsuI GTATCC 1 cut(s) 109
BsuRI GGCC 7 cut(s) 209, 294, 383, 534, 593, 725, 747
BtgI CCRYGG 1 cut(s) 165
BtgZI GCGATG 1 cut(s) 5
BtrI CACGTC 1 cut(s) 551
BtsCI GGATG 1 cut(s) 607
BtsI GCAGTG 2 cut(s) 156, 411
BtsIMutI CAGTG 2 cut(s) 156, 411
Cac8I GCNNGC 6 cut(s) 296, 402, 489, 496, 579, 642
CfoI GCGC 3 cut(s) 96, 188, 646
Cfr13I GGNCC 4 cut(s) 532, 533, 592, 617
CseI GACGC 1 cut(s) 400
Csp6I GTAC 2 cut(s) 440, 751
CspCI CAANNNNNGTGG 2 cut(s) 186, 221
CviAII CATG 4 cut(s) 107, 161, 211, 443
CviQI GTAC 2 cut(s) 440, 751
DpnI GATC 4 cut(s) 267, 365, 572, 782
DpnII GATC 4 cut(s) 265, 363, 570, 780
EaeI YGGCCR 5 cut(s) 207, 292, 381, 723, 745
Eam1104I CTCTTC 2 cut(s) 417, 549
EarI CTCTTC 2 cut(s) 417, 549
Eco130I CCWWGG 4 cut(s) 280, 289, 378, 654
Eco24I GRGCYC 2 cut(s) 160, 536
Eco32I GATATC 1 cut(s) 766
Eco47I GGWCC 1 cut(s) 617
Eco47III AGCGCT 1 cut(s) 187
Eco57I CTGAAG 1 cut(s) 398
Eco91I GGTNACC 1 cut(s) 356
EcoO109I RGGNCCY 1 cut(s) 617
EcoO65I GGTNACC 1 cut(s) 356
EcoRII CCWGG 3 cut(s) 231, 325, 725
EcoRV GATATC 1 cut(s) 766
EcoT14I CCWWGG 4 cut(s) 280, 289, 378, 654
EcoT38I GRGCYC 2 cut(s) 160, 536
ErhI CCWWGG 4 cut(s) 280, 289, 378, 654
Esp3I CGTCTC 1 cut(s) 383
FaeI CATG 4 cut(s) 110, 164, 214, 446
FaqI GGGAC 2 cut(s) 469, 630
FatI CATG 4 cut(s) 106, 160, 210, 442
FauI CCCGC 2 cut(s) 440, 633
FbaI TGATCA 1 cut(s) 570
Fnu4HI GCNGC 7 cut(s) 36, 323, 492, 629, 711, 745, 807
FokI GGATG 1 cut(s) 614
FriOI GRGCYC 2 cut(s) 160, 536
Fsp4HI GCNGC 7 cut(s) 36, 323, 492, 629, 711, 745, 807
FspBI CTAG 1 cut(s) 86
GlaI GCGC 3 cut(s) 95, 187, 645
GluI GCNGC 7 cut(s) 36, 323, 492, 629, 711, 745, 807
HaeII RGCGCY 1 cut(s) 189
HaeIII GGCC 7 cut(s) 209, 294, 383, 534, 593, 725, 747
HapII CCGG 2 cut(s) 530, 536
HgaI GACGC 1 cut(s) 400
HhaI GCGC 3 cut(s) 96, 188, 646
Hin1I GRCGYC 1 cut(s) 392
Hin1II CATG 4 cut(s) 110, 164, 214, 446
Hin6I GCGC 3 cut(s) 94, 186, 644
HinP1I GCGC 3 cut(s) 94, 186, 644
HindIII AAGCTT 1 cut(s) 255
HinfI GANTC 1 cut(s) 409
HpaII CCGG 2 cut(s) 530, 536
Hpy188I TCNGA 2 cut(s) 142, 304
Hpy188III TCNNGA 3 cut(s) 317, 367, 801
HpyCH4III ACNGT 1 cut(s) 505
HpyCH4IV ACGT 1 cut(s) 550
HpyCH4V TGCA 9 cut(s) 110, 149, 214, 467, 487, 631, 710, 739, 777
HpyF10VI GCNNNNNNNGC 6 cut(s) 155, 183, 194, 291, 473, 637
HpySE526I ACGT 1 cut(s) 550
Hsp92I GRCGYC 1 cut(s) 392
Hsp92II CATG 4 cut(s) 110, 164, 214, 446
HspAI GCGC 3 cut(s) 94, 186, 644
Ksp22I TGATCA 1 cut(s) 570
Kzo9I GATC 4 cut(s) 265, 363, 570, 780
LmnI GCTCC 2 cut(s) 290, 803
Lsp1109I GCAGC 6 cut(s) 22, 309, 478, 615, 722, 793
LweI GCATC 1 cut(s) 697
MaeI CTAG 1 cut(s) 86
MaeII ACGT 1 cut(s) 550
MaeIII GTNAC 2 cut(s) 356, 406
MalI GATC 4 cut(s) 267, 365, 572, 782
MboI GATC 4 cut(s) 265, 363, 570, 780
MboII GAAGA 6 cut(s) 40, 164, 404, 566, 707, 716
MflI RGATCY 2 cut(s) 265, 780
MhlI GDGCHC 2 cut(s) 160, 536
MlsI TGGCCA 4 cut(s) 209, 294, 383, 725
MluCI AATT 1 cut(s) 224
MluNI TGGCCA 4 cut(s) 209, 294, 383, 725
MlyI GAGTC 1 cut(s) 403
Mox20I TGGCCA 4 cut(s) 209, 294, 383, 725
MscI TGGCCA 4 cut(s) 209, 294, 383, 725
Msp20I TGGCCA 4 cut(s) 209, 294, 383, 725
MspA1I CMGCKG 1 cut(s) 628
MspI CCGG 2 cut(s) 530, 536
MspR9I CCNGG 5 cut(s) 233, 327, 531, 536, 727
Mva1269I GAATGC 1 cut(s) 151
MvaI CCWGG 3 cut(s) 233, 327, 727
MvnI CGCG 2 cut(s) 81, 644
MwoI GCNNNNNNNGC 6 cut(s) 155, 183, 194, 291, 473, 637
NciI CCSGG 2 cut(s) 531, 536
NdeII GATC 4 cut(s) 265, 363, 570, 780
NlaIII CATG 4 cut(s) 110, 164, 214, 446
NlaIV GGNNCC 4 cut(s) 267, 286, 534, 618
NmuCI GTSAC 1 cut(s) 406
NspI RCATGY 2 cut(s) 110, 446
PciI ACATGT 1 cut(s) 442
PctI GAATGC 1 cut(s) 151
PflMI CCANNNNNTGG 1 cut(s) 505
PkrI GCNGC 7 cut(s) 37, 324, 493, 630, 712, 746, 808
PleI GAGTC 1 cut(s) 403
PpsI GAGTC 1 cut(s) 403
PpuMI RGGWCCY 1 cut(s) 617
PscI ACATGT 1 cut(s) 442
PsiI TTATAA 1 cut(s) 663
Psp5II RGGWCCY 1 cut(s) 617
Psp6I CCWGG 3 cut(s) 231, 325, 725
PspEI GGTNACC 1 cut(s) 356
PspGI CCWGG 3 cut(s) 231, 325, 725
PspN4I GGNNCC 4 cut(s) 267, 286, 534, 618
PspOMI GGGCCC 1 cut(s) 532
PspPI GGNCC 4 cut(s) 532, 533, 592, 617
PspPPI RGGWCCY 1 cut(s) 617
PsuI RGATCY 2 cut(s) 265, 780
RsaI GTAC 2 cut(s) 441, 752
RsaNI GTAC 2 cut(s) 440, 751
SatI GCNGC 7 cut(s) 36, 323, 492, 629, 711, 745, 807
Sau3AI GATC 4 cut(s) 265, 363, 570, 780
Sau96I GGNCC 4 cut(s) 532, 533, 592, 617
SchI GAGTC 1 cut(s) 403
ScrFI CCNGG 5 cut(s) 233, 327, 531, 536, 727
SduI GDGCHC 2 cut(s) 160, 536
SfaNI GCATC 1 cut(s) 697
SinI GGWCC 1 cut(s) 617
Sse9I AATT 1 cut(s) 224
SsiI CCGC 3 cut(s) 433, 626, 744
SspI AATATT 1 cut(s) 10
SspMI CTAG 1 cut(s) 86
StyD4I CCNGG 5 cut(s) 231, 325, 529, 534, 725
StyI CCWWGG 4 cut(s) 280, 289, 378, 654
TaaI ACNGT 1 cut(s) 505
TaiI ACGT 1 cut(s) 553
TaqI TCGA 1 cut(s) 680
TasI AATT 1 cut(s) 224
TatI WGTACW 1 cut(s) 439
TauI GCSGC 1 cut(s) 747
TscAI CASTG 2 cut(s) 156, 411
TseFI GTSAC 1 cut(s) 406
TseI GCWGC 6 cut(s) 35, 322, 491, 628, 710, 806
Tsp45I GTSAC 1 cut(s) 406
TspRI CASTG 2 cut(s) 156, 411
Van91I CCANNNNNTGG 1 cut(s) 505
VpaK11BI GGWCC 1 cut(s) 617
XceI RCATGY 2 cut(s) 110, 446
XspI CTAG 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.