FvH4_4g05275

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000057
Physical Location & Seq
Reverse (-)
4556691 .. 4558430
1740 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g05275.t1

Sequence Viewer

Length: 1566 bp
ATGAACTTAATTAGTTCAAGTGCAACTGAGGGATCAAGGTATATTCCACCTAATGAACGCCCTAAGGGGAATCCGAAGGTCGGGGCCCAGAAGACTCCCCAATTTACATTAGGAGCCAGTTCGTCAAAGACACCACCCCTTCTACCCACGACAGGCAACCCTAGAGTCGCACTTGGGGGCGCCGGTGTCTTCCCATCTCAAGGGATCGGGACACCAGATGACCCAGTTATAGCTTATTCCAGTTCGACCCCTAAGAACATCGGGCAGGCCCCTAGCCTCTCTGCATGGCACGACCACGATCAGGGGGCAGAATCCACACCAGTAACGGCAGCCGATTGGCGCCAGCTCATCTCGAGCATAGTCAAGGAGCAAACCGGAAAAGGTGATGCTAGCTTGCATTATCGTGATCCCTATCCTGATAGCGTGGCACAATATCCCTTCCCTCATGGGTTTAAGAATATTGTTTTCACCACTTTCTCCAGGGAGACAAGGGAAGATGCAGCAACACACATGGCCCGTTTTAAGGTCCAATGCGGCCAATACGGGAATGATGATATGCTCAAACTCAAACTCTTCGGGACTTCTCTGTCCGGGGCTGCTTTCACCTGGTACTCCAGATTGAAGCCTGGGTCAATAGCAGATTGGCCCACTATGGAAAGACTCTTCCGAGAAACGTACGGCACGATTGAGCCTGAAGTTGGCCTCGACTCCCTCACACAGATGAGCCAGCAGAGCATGGAGTCTTTCCTCCAACGCTTCAAGATCCAGCAAGCCAAGTGTGATTACCTGCTACCTGAGCAGGAAGCCATTAAGTTGGCTATTAGAGGTTTGGAGCACCGCCAGCGGTTGAAGCACCATGGAGAGCGCTTTAATTCCATGGGTGACATGATTAACAAAGTCGGCAGCTACGAGCTAATCCTGAACGAGTTGGACGGCAAAACAAATGCTTCCAAAGGAACTTACATACCAGGGAAAAACCGGATAGTGGGGGCACTAAACATACAAACCCCTACTCATGATCCATATTATCAAAGACCTGAGGGAGTTCATACGGATCAGGACCTGGATGACATTGGCGCAGTAGAATTGATTGGCAAGCCATTAGCTCATAAGTTGAAAAACCTGAAGATGACACGTGAGCCAATCACCATCCAGTCCTTTGCATGGACCAAGCCGGAGTACGAGTCATACACCTATGATGCTAAGAACGCCCATCTGGTCTTTAATGACCTAATCGAGGCAAGATACGTGCACTTGGATCACAAGATACCGCCCAAGGAGGAGCTGAAAGACGAGAAGTACTGCGCCTTCCACAATGTTTACAATCATGACACCAAAGATTGTGTCAAGCTTCGAGACCAGCTGCAGACATGGCTGAACTCAGGCGAACTAAAGATGAAAACACCGGATCTTGCACACGAGGTTTTAGATGATCTCATCGACGATGGGCTCGTCACAGTGGCCAATTCCTTGCCTTACGTAGAATATAAGGAGGGGCGCATTCACTGCAAGTTTCATAATAGCTGGGGGCATAGAACCAGCGAATGCCAGCAGCTTAGAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

522

Amino Acids

58.58

Weight (kDa)

6.48

Isoelectric Point (pI)

30.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotrans_gag PF03732 190 - 278 7.5e-12 Retrotransposon gag protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000057)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00341 FvH4_2g18201 FvH4_2g24491 FvH4_2g24511 FvH4_3g22961 FvH4_3g33532 FvH4_3g33534 FvH4_4g05275 FvH4_4g12372 FvH4_5g20143 FvH4_7g12392
pyrus_communis pycom12g16120
rosa_chinensis RchiOBHm_Chr5g0023531 RchiOBHm_Chr6g0271201
rosa_laevigata RLG00000030639
rosa_multiflora Rmu_co8016136.1_g000001 Rmu_co8027180.1_g000001 Rmu_co8041016.1_g000001 Rmu_co8052812.1_g000001 Rmu_co8152468.1_g000001 Rmu_co8165796.1_g000001 Rmu_co8170214.1_g000001 Rmu_co8227433.1_g000001 Rmu_co8241379.1_g000001 Rmu_co8254305.1_g000001 Rmu_co8258647.1_g000001 Rmu_co8265535.1_g000002 Rmu_co8276845.1_g000001 Rmu_co8296303.1_g000001 Rmu_co8304827.1_g000001 Rmu_co8308345.1_g000001 Rmu_co8320493.1_g000002 Rmu_co8326955.1_g000001 Rmu_co8331007.1_g000001 Rmu_co8335625.1_g000001 Rmu_co8354465.1_g000001 Rmu_co8360201.1_g000001 Rmu_co8362075.1_g000002 Rmu_co8362991.1_g000001 Rmu_co8364567.1_g000001 Rmu_co8365273.1_g000001 Rmu_co8387267.1_g000001 Rmu_co8395251.1_g000002 Rmu_co8396677.1_g000001 Rmu_co8457659.1_g000001 Rmu_co8478117.1_g000001 Rmu_co8487163.1_g000001 Rmu_co8498169.1_g000001 Rmu_sc0000029.1_g000022 Rmu_sc0000063.1_g000007 Rmu_sc0000112.1_g000020 Rmu_sc0000146.1_g000006 Rmu_sc0000245.1_g000015 Rmu_sc0000276.1_g000036 Rmu_sc0000334.1_g000033 Rmu_sc0000334.1_g000034 Rmu_sc0000434.1_g000019 Rmu_sc0000441.1_g000118 Rmu_sc0000533.1_g000054 Rmu_sc0000533.1_g000055 Rmu_sc0000595.1_g000041 Rmu_sc0000663.1_g000019 Rmu_sc0000673.1_g000002 Rmu_sc0000698.1_g000102 Rmu_sc0000745.1_g000007 Rmu_sc0000768.1_g000018 Rmu_sc0000811.1_g000012 Rmu_sc0000826.1_g000009 Rmu_sc0000826.1_g000011 Rmu_sc0001051.1_g000042 Rmu_sc0001051.1_g000043 Rmu_sc0001148.1_g000014 Rmu_sc0001198.1_g000021 Rmu_sc0001227.1_g000008 Rmu_sc0001250.1_g000028 Rmu_sc0001395.1_g000019 Rmu_sc0001395.1_g000020 Rmu_sc0001396.1_g000002 Rmu_sc0001424.1_g000007 Rmu_sc0001455.1_g000025 Rmu_sc0001455.1_g000029 Rmu_sc0001499.1_g000036 Rmu_sc0001539.1_g000001 Rmu_sc0001562.1_g000027 Rmu_sc0001563.1_g000024 Rmu_sc0001719.1_g000022 Rmu_sc0001796.1_g000008 Rmu_sc0001884.1_g000022 Rmu_sc0001903.1_g000018 Rmu_sc0002041.1_g000012 Rmu_sc0002096.1_g000002 Rmu_sc0002126.1_g000027 Rmu_sc0002181.1_g000010 Rmu_sc0002259.1_g000004 Rmu_sc0002279.1_g000018 Rmu_sc0002312.1_g000060 Rmu_sc0002383.1_g000011 Rmu_sc0002401.1_g000012 Rmu_sc0002509.1_g000028 Rmu_sc0002569.1_g000008 Rmu_sc0002587.1_g000037 Rmu_sc0002665.1_g000006 Rmu_sc0002698.1_g000018 Rmu_sc0002724.1_g000002 Rmu_sc0002727.1_g000011 Rmu_sc0002927.1_g000055 Rmu_sc0002927.1_g000056 Rmu_sc0002943.1_g000009 Rmu_sc0002943.1_g000023 Rmu_sc0002998.1_g000001 Rmu_sc0003089.1_g000036 Rmu_sc0003127.1_g000022 Rmu_sc0003127.1_g000040 Rmu_sc0003207.1_g000010 Rmu_sc0003207.1_g000011 Rmu_sc0003275.1_g000034 Rmu_sc0003275.1_g000036 Rmu_sc0003337.1_g000047 Rmu_sc0003376.1_g000004 Rmu_sc0003522.1_g000024 Rmu_sc0003613.1_g000007 Rmu_sc0003708.1_g000026 Rmu_sc0003784.1_g000018 Rmu_sc0004079.1_g000005 Rmu_sc0004092.1_g000017 Rmu_sc0004168.1_g000058 Rmu_sc0004174.1_g000019 Rmu_sc0004199.1_g000049 Rmu_sc0004230.1_g000005 Rmu_sc0004283.1_g000021 Rmu_sc0004283.1_g000022 Rmu_sc0004314.1_g000017 Rmu_sc0004538.1_g000006 Rmu_sc0004542.1_g000011 Rmu_sc0004602.1_g000024 Rmu_sc0004641.1_g000006 Rmu_sc0004862.1_g000011 Rmu_sc0004941.1_g000043 Rmu_sc0005003.1_g000003 Rmu_sc0005112.1_g000018 Rmu_sc0005144.1_g000014 Rmu_sc0005266.1_g000014 Rmu_sc0005418.1_g000004 Rmu_sc0005627.1_g000006 Rmu_sc0005652.1_g000022 Rmu_sc0005747.1_g000032 Rmu_sc0005982.1_g000013 Rmu_sc0006050.1_g000017 Rmu_sc0006059.1_g000035 Rmu_sc0006128.1_g000002 Rmu_sc0006228.1_g000009 Rmu_sc0006243.1_g000009 Rmu_sc0006300.1_g000004 Rmu_sc0006463.1_g000007 Rmu_sc0006579.1_g000016 Rmu_sc0006595.1_g000011 Rmu_sc0006624.1_g000006 Rmu_sc0006624.1_g000007 Rmu_sc0006624.1_g000008 Rmu_sc0006674.1_g000025 Rmu_sc0006792.1_g000013 Rmu_sc0006872.1_g000022 Rmu_sc0006984.1_g000009 Rmu_sc0006984.1_g000010 Rmu_sc0006986.1_g000011 Rmu_sc0007016.1_g000001 Rmu_sc0007221.1_g000006 Rmu_sc0007222.1_g000005 Rmu_sc0007222.1_g000006 Rmu_sc0007251.1_g000001 Rmu_sc0007777.1_g000037 Rmu_sc0007826.1_g000018 Rmu_sc0008053.1_g000015 Rmu_sc0008502.1_g000006 Rmu_sc0008659.1_g000009 Rmu_sc0009045.1_g000009 Rmu_sc0009045.1_g000010 Rmu_sc0009060.1_g000012 Rmu_sc0009360.1_g000024 Rmu_sc0009431.1_g000001 Rmu_sc0009606.1_g000014 Rmu_sc0009774.1_g000001 Rmu_sc0009844.1_g000014 Rmu_sc0010313.1_g000001 Rmu_sc0010454.1_g000008 Rmu_sc0010543.1_g000016 Rmu_sc0010900.1_g000002 Rmu_sc0010925.1_g000009 Rmu_sc0011136.1_g000012 Rmu_sc0011534.1_g000004 Rmu_sc0011809.1_g000007 Rmu_sc0011917.1_g000005 Rmu_sc0012103.1_g000001 Rmu_sc0012287.1_g000001 Rmu_sc0012303.1_g000007 Rmu_sc0012344.1_g000009 Rmu_sc0012674.1_g000007 Rmu_sc0012686.1_g000001 Rmu_sc0012742.1_g000005 Rmu_sc0012746.1_g000026 Rmu_sc0012746.1_g000027 Rmu_sc0013419.1_g000008 Rmu_sc0014866.1_g000004 Rmu_sc0015325.1_g000011 Rmu_sc0015486.1_g000005 Rmu_sc0015651.1_g000002 Rmu_sc0015783.1_g000001 Rmu_sc0016387.1_g000009 Rmu_sc0017518.1_g000005 Rmu_sc0018480.1_g000001 Rmu_sc0018537.1_g000003 Rmu_sc0019200.1_g000002 Rmu_sc0019544.1_g000014 Rmu_sc0019544.1_g000015 Rmu_sc0019873.1_g000001 Rmu_sc0020392.1_g000001 Rmu_sc0020466.1_g000001 Rmu_sc0022008.1_g000001 Rmu_sc0022008.1_g000002 Rmu_sc0022274.1_g000001 Rmu_sc0023644.1_g000005 Rmu_sc0024657.1_g000001 Rmu_sc0024721.1_g000003 Rmu_sc0025790.1_g000001 Rmu_sc0026866.1_g000001 Rmu_sc0027363.1_g000002 Rmu_sc0027485.1_g000001 Rmu_sc0028394.1_g000001 Rmu_sc0033121.1_g000002 Rmu_sc0033838.1_g000001 Rmu_sc0035536.1_g000001 Rmu_sc0036296.1_g000001 Rmu_sc0036297.1_g000001 Rmu_sc0036298.1_g000001 Rmu_sc0036797.1_g000001 Rmu_sc0037010.1_g000001 Rmu_sc0037444.1_g000002 Rmu_sc0039012.1_g000002 Rmu_sc0040172.1_g000001 Rmu_sc0042083.1_g000001 Rmu_ssc0000018.1_g000001 Rmu_ssc0000171.1_g000032 Rmu_ssc0000213.1_g000064 Rmu_ssc0000213.1_g000096 Rmu_ssc0000262.1_g000017 Rmu_ssc0000295.1_g000036 Rmu_ssc0000343.1_g000008 Rmu_ssc0000398.1_g000003 Rmu_ssc0000400.1_g000085 Rmu_ssc0000438.1_g000007 Rmu_ssc0000478.1_g000003
rosa_roxburghii Rroxscaffold_166G00440710 Rroxscaffold_166G00440720 Rroxscaffold_174G00435300 Rroxscaffold_174G00435310 Rroxscaffold_177G00434290 Rroxscaffold_177G00434300 Rroxscaffold_177G00434310 Rroxscaffold_178G00437310 Rroxscaffold_1G00002500 Rroxscaffold_1G00004730 Rroxscaffold_1G00008660 Rroxscaffold_1G00008670 Rroxscaffold_1G00008680 Rroxscaffold_1G00008690 Rroxscaffold_1G00010260 Rroxscaffold_1G00015670 Rroxscaffold_1G00021140 Rroxscaffold_1G00024380 Rroxscaffold_1G00032420 Rroxscaffold_1G00050600 Rroxscaffold_1G00050610 Rroxscaffold_1G00055970 Rroxscaffold_1G00066220 Rroxscaffold_2G00085370 Rroxscaffold_2G00092350 Rroxscaffold_2G00092360 Rroxscaffold_2G00093350 Rroxscaffold_2G00097090 Rroxscaffold_2G00108040 Rroxscaffold_2G00109970 Rroxscaffold_2G00111470 Rroxscaffold_2G00111480 Rroxscaffold_2G00112000 Rroxscaffold_2G00112060 Rroxscaffold_2G00129160 Rroxscaffold_2G00132340 Rroxscaffold_2G00136720 Rroxscaffold_2G00152910 Rroxscaffold_3G00223160 Rroxscaffold_3G00223170 Rroxscaffold_3G00223520 Rroxscaffold_3G00230980 Rroxscaffold_3G00245030 Rroxscaffold_3G00259050 Rroxscaffold_3G00259060 Rroxscaffold_3G00259070 Rroxscaffold_3G00267470 Rroxscaffold_3G00272040 Rroxscaffold_3G00272440 Rroxscaffold_3G00272450 Rroxscaffold_4G00285860 Rroxscaffold_4G00285870 Rroxscaffold_4G00294380 Rroxscaffold_4G00294390 Rroxscaffold_4G00297890 Rroxscaffold_4G00298150 Rroxscaffold_4G00303090 Rroxscaffold_4G00306480 Rroxscaffold_4G00306680 Rroxscaffold_4G00310490 Rroxscaffold_4G00310630 Rroxscaffold_4G00310670 Rroxscaffold_4G00310680 Rroxscaffold_4G00310690 Rroxscaffold_4G00317930 Rroxscaffold_4G00320190 Rroxscaffold_4G00323370 Rroxscaffold_4G00323380 Rroxscaffold_4G00324200 Rroxscaffold_4G00331220 Rroxscaffold_5G00339230 Rroxscaffold_5G00341260 Rroxscaffold_5G00343120 Rroxscaffold_5G00345440 Rroxscaffold_5G00345450 Rroxscaffold_5G00353190 Rroxscaffold_5G00353420 Rroxscaffold_5G00356560 Rroxscaffold_5G00359790 Rroxscaffold_5G00381710 Rroxscaffold_5G00381720 Rroxscaffold_5G00386250 Rroxscaffold_5G00387520 Rroxscaffold_6G00390180 Rroxscaffold_6G00392810 Rroxscaffold_6G00401230 Rroxscaffold_6G00402640 Rroxscaffold_6G00405640 Rroxscaffold_6G00405650 Rroxscaffold_6G00405850 Rroxscaffold_6G00405860 Rroxscaffold_6G00412020 Rroxscaffold_6G00415690 Rroxscaffold_6G00415700 Rroxscaffold_7G00168110 Rroxscaffold_7G00178950 Rroxscaffold_7G00178960 Rroxscaffold_7G00193670 Rroxscaffold_7G00203020 Rroxscaffold_7G00203340 Rroxscaffold_7G00203550 Rroxscaffold_7G00207220 Rroxscaffold_7G00207250 Rroxscaffold_7G00207430 Rroxscaffold_7G00209310 Rroxscaffold_7G00211530 Rroxscaffold_7G00211540 Rroxscaffold_7G00214160 Rroxscaffold_7G00216040 Rroxscaffold_7G00216800
rosa_samantha Rh1AG276800 Rh1CG260400 Rh3CG366700
rosa_wichuraiana Rw1G001440 Rw3G029210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 586
Acc36I ACCTGC 1 cut(s) 795
AccB1I GGYRCC 2 cut(s) 179, 339
AciI CCGC 4 cut(s) 534, 838, 844, 1271
AclWI GGATC 8 cut(s) 40, 212, 401, 757, 1013, 1062, 1266, 1416
AcoI YGGCCR 2 cut(s) 535, 1461
AcuI CTGAAG 2 cut(s) 714, 1145
AcvI CACGTG 1 cut(s) 1136
AcyI GRCGYC 2 cut(s) 180, 340
AfaI GTAC 4 cut(s) 611, 677, 1181, 1301
AfeI AGCGCT 1 cut(s) 866
AfiI CCNNNNNNNGG 9 cut(s) 80, 152, 200, 301, 523, 698, 985, 1164, 1237
AflIII ACRYGT 1 cut(s) 1133
AgsI TTSAA 5 cut(s) 18, 622, 760, 850, 1117
AjnI CCWGG 5 cut(s) 479, 605, 625, 967, 1062
Alw21I GWGCWC 2 cut(s) 837, 1254
Alw26I GTCTC 3 cut(s) 479, 1350, 1554
Alw44I GTGCAC 1 cut(s) 1250
AlwI GGATC 8 cut(s) 40, 212, 401, 757, 1013, 1062, 1266, 1416
AlwNI CAGNNNCTG 1 cut(s) 1063
Ama87I CYCGRG 1 cut(s) 352
Aor51HI AGCGCT 1 cut(s) 866
AoxI GGCC 7 cut(s) 84, 267, 513, 535, 644, 700, 1461
ApaI GGGCCC 1 cut(s) 88
ApaLI GTGCAC 1 cut(s) 1250
ApeKI GCWGC 6 cut(s) 329, 500, 596, 903, 1363, 1552
ArsI GACNNNNNNTTYG 2 cut(s) 1329, 1361
AspLEI GCGC 6 cut(s) 182, 342, 867, 1079, 1307, 1500
AspS9I GGNCC 8 cut(s) 84, 85, 268, 514, 526, 645, 1060, 1167
AsuC2I CCSGG 1 cut(s) 592
AsuHPI GGTGA 5 cut(s) 395, 460, 595, 893, 1138
AsuNHI GCTAGC 1 cut(s) 389
AvaI CYCGRG 1 cut(s) 352
AvaII GGWCC 3 cut(s) 526, 1060, 1167
AxyI CCTNAGG 2 cut(s) 63, 1038
BaeGI GKGCMC 3 cut(s) 88, 994, 1254
BalI TGGCCA 1 cut(s) 1463
BanI GGYRCC 2 cut(s) 179, 339
BanII GRGCYC 2 cut(s) 88, 1452
BarI GAAGNNNNNNTAC 2 cut(s) 1292, 1324
BauI CACGAG 1 cut(s) 1418
BbrPI CACGTG 1 cut(s) 1136
BbsI GAAGAC 2 cut(s) 98, 181
Bbv12I GWGCWC 2 cut(s) 837, 1254
BbvI GCAGC 5 cut(s) 341, 512, 583, 915, 1350
BccI CCATC 4 cut(s) 202, 1157, 1221, 1439
BceAI ACGGC 3 cut(s) 342, 694, 949
BciT130I CCWGG 5 cut(s) 481, 607, 627, 969, 1064
BcnI CCSGG 1 cut(s) 592
BcoDI GTCTC 3 cut(s) 479, 1350, 1554
BfaI CTAG 4 cut(s) 162, 273, 390, 1564
BfmI CTRYAG 1 cut(s) 1364
BfoI RGCGCY 3 cut(s) 183, 343, 868
BfuAI ACCTGC 1 cut(s) 795
BisI GCNGC 7 cut(s) 330, 501, 535, 597, 904, 1364, 1553
BlsI GCNGC 7 cut(s) 331, 502, 536, 598, 905, 1365, 1554
BmcAI AGTACT 1 cut(s) 1301
Bme1390I CCNGG 6 cut(s) 481, 592, 607, 627, 969, 1064
Bme18I GGWCC 3 cut(s) 526, 1060, 1167
BmeT110I CYCGRG 1 cut(s) 352
BmgT120I GGNCC 8 cut(s) 84, 85, 268, 514, 526, 645, 1060, 1167
BmiI GGNNCC 6 cut(s) 85, 86, 115, 181, 270, 341
BmrFI CCNGG 6 cut(s) 481, 592, 607, 627, 969, 1064
BmrI ACTGGG 1 cut(s) 218
BmsI GCATC 3 cut(s) 376, 487, 1189
BmtI GCTAGC 1 cut(s) 393
BmuI ACTGGG 1 cut(s) 218
BpiI GAAGAC 2 cut(s) 98, 181
BpmI CTGGAG 2 cut(s) 463, 598
Bpu10I CCTNAGC 1 cut(s) 795
BpuEI CTTGAG 1 cut(s) 183
BpuMI CCSGG 1 cut(s) 592
BsaAI YACGTR 3 cut(s) 1136, 1249, 1480
BsaBI GATNNNNATC 1 cut(s) 411
BsaHI GRCGYC 2 cut(s) 180, 340
BsaI GGTCTC 1 cut(s) 1350
BsaJI CCNNGG 7 cut(s) 480, 591, 626, 856, 876, 968, 1275
BsaWI WCCGGW 3 cut(s) 374, 978, 1405
BsaXI ACNNNNNCTCC 2 cut(s) 1169, 1199
Bsc4I CCNNNNNNNGG 9 cut(s) 80, 152, 200, 301, 523, 698, 985, 1164, 1237
Bse118I RCCGGY 1 cut(s) 182
Bse1I ACTGG 5 cut(s) 117, 224, 240, 320, 1153
Bse21I CCTNAGG 2 cut(s) 63, 1038
Bse8I GATNNNNATC 1 cut(s) 411
BseBI CCWGG 5 cut(s) 481, 607, 627, 969, 1064
BseDI CCNNGG 7 cut(s) 480, 591, 626, 856, 876, 968, 1275
BseGI GGATG 2 cut(s) 1072, 1149
BseJI GATNNNNATC 1 cut(s) 411
BseLI CCNNNNNNNGG 9 cut(s) 80, 152, 200, 301, 523, 698, 985, 1164, 1237
BseMII CTCAG 4 cut(s) 18, 786, 1029, 1395
BseNI ACTGG 5 cut(s) 117, 224, 240, 320, 1153
BseRI GAGGAG 1 cut(s) 1295
BseSI GKGCMC 3 cut(s) 88, 994, 1254
BseXI GCAGC 5 cut(s) 341, 512, 583, 915, 1350
BseYI CCCAGC 1 cut(s) 1524
BshFI GGCC 7 cut(s) 86, 269, 515, 537, 646, 702, 1463
BshNI GGYRCC 2 cut(s) 179, 339
BsiHKAI GWGCWC 2 cut(s) 837, 1254
BsiHKCI CYCGRG 1 cut(s) 352
BsiSI CCGG 6 cut(s) 183, 375, 591, 979, 1175, 1406
BsiWI CGTACG 1 cut(s) 675
BslFI GGGAC 2 cut(s) 223, 592
BslI CCNNNNNNNGG 9 cut(s) 80, 152, 200, 301, 523, 698, 985, 1164, 1237
BsmAI GTCTC 3 cut(s) 479, 1350, 1554
BsmFI GGGAC 2 cut(s) 223, 592
BsmI GAATGC 2 cut(s) 1500, 1550
BsnI GGCC 7 cut(s) 86, 269, 515, 537, 646, 702, 1463
Bso31I GGTCTC 1 cut(s) 1350
BsoBI CYCGRG 1 cut(s) 352
Bsp120I GGGCCC 1 cut(s) 84
Bsp1286I GDGCHC 5 cut(s) 88, 837, 994, 1254, 1452
Bsp19I CCATGG 2 cut(s) 856, 876
BspACI CCGC 4 cut(s) 534, 838, 844, 1271
BspANI GGCC 7 cut(s) 86, 269, 515, 537, 646, 702, 1463
BspCNI CTCAG 4 cut(s) 19, 787, 1030, 1394
BspHI TCATGA 2 cut(s) 1015, 1327
BspLI GGNNCC 6 cut(s) 85, 86, 115, 181, 270, 341
BspMAI CTGCAG 1 cut(s) 1368
BspMI ACCTGC 1 cut(s) 795
BspOI GCTAGC 1 cut(s) 393
BspPI GGATC 8 cut(s) 40, 212, 401, 757, 1013, 1062, 1266, 1416
BspT107I GGYRCC 2 cut(s) 179, 339
BspTNI GGTCTC 1 cut(s) 1350
BsrFI RCCGGY 1 cut(s) 182
BsrI ACTGG 5 cut(s) 117, 224, 240, 320, 1153
BssAI RCCGGY 1 cut(s) 182
BssECI CCNNGG 7 cut(s) 480, 591, 626, 856, 876, 968, 1275
BssNI GRCGYC 2 cut(s) 180, 340
BssSI CACGAG 1 cut(s) 1418
BssT1I CCWWGG 3 cut(s) 856, 876, 1275
Bst2BI CACGAG 1 cut(s) 1418
Bst2UI CCWGG 5 cut(s) 481, 607, 627, 969, 1064
Bst4CI ACNGT 1 cut(s) 1459
Bst6I CTCTTC 2 cut(s) 578, 668
BstACI GRCGYC 2 cut(s) 180, 340
BstAPI GCANNNNNTGC 1 cut(s) 1506
BstBAI YACGTR 3 cut(s) 1136, 1249, 1480
BstC8I GCNNGC 9 cut(s) 267, 344, 391, 395, 728, 771, 842, 1097, 1550
BstDEI CTNAG 8 cut(s) 27, 63, 252, 795, 1038, 1203, 1381, 1556
BstDSI CCRYGG 2 cut(s) 856, 876
BstENI CCTNNNNNAGG 1 cut(s) 1235
BstF5I GGATG 2 cut(s) 1072, 1149
BstH2I RGCGCY 3 cut(s) 183, 343, 868
BstHHI GCGC 6 cut(s) 182, 342, 867, 1079, 1307, 1500
BstMAI GTCTC 3 cut(s) 479, 1350, 1554
BstMWI GCNNNNNNNGC 7 cut(s) 732, 796, 841, 850, 1208, 1372, 1506
BstNI CCWGG 5 cut(s) 481, 607, 627, 969, 1064
BstSCI CCNGG 6 cut(s) 479, 590, 605, 625, 967, 1062
BstSFI CTRYAG 1 cut(s) 1364
BstSLI GKGCMC 3 cut(s) 88, 994, 1254
BstSNI TACGTA 1 cut(s) 1480
BstV1I GCAGC 5 cut(s) 341, 512, 583, 915, 1350
BstV2I GAAGAC 2 cut(s) 98, 181
BstX2I RGATCY 2 cut(s) 762, 1408
BstXI CCANNNNNNTGG 1 cut(s) 814
BstYI RGATCY 2 cut(s) 762, 1408
Bsu36I CCTNAGG 2 cut(s) 63, 1038
BsuRI GGCC 7 cut(s) 86, 269, 515, 537, 646, 702, 1463
BtgI CCRYGG 2 cut(s) 856, 876
BtsCI GGATG 2 cut(s) 1072, 1149
BtsI GCAGTG 1 cut(s) 1504
BtsIMutI CAGTG 2 cut(s) 1464, 1504
BveI ACCTGC 1 cut(s) 795
Cac8I GCNNGC 9 cut(s) 267, 344, 391, 395, 728, 771, 842, 1097, 1550
CaiI CAGNNNCTG 1 cut(s) 1063
CciI TCATGA 2 cut(s) 1015, 1327
CfoI GCGC 6 cut(s) 182, 342, 867, 1079, 1307, 1500
Cfr10I RCCGGY 1 cut(s) 182
Cfr13I GGNCC 8 cut(s) 84, 85, 268, 514, 526, 645, 1060, 1167
CsiI ACCWGGT 1 cut(s) 605
Csp6I GTAC 4 cut(s) 610, 676, 1180, 1300
CviQI GTAC 4 cut(s) 610, 676, 1180, 1300
DdeI CTNAG 8 cut(s) 27, 63, 252, 795, 1038, 1203, 1381, 1556
DinI GGCGCC 2 cut(s) 181, 341
DrdI GACNNNNNNGTC 1 cut(s) 586
DseDI GACNNNNNNGTC 1 cut(s) 586
EaeI YGGCCR 2 cut(s) 535, 1461
Eam1104I CTCTTC 2 cut(s) 578, 668
EarI CTCTTC 2 cut(s) 578, 668
Eco105I TACGTA 1 cut(s) 1480
Eco130I CCWWGG 3 cut(s) 856, 876, 1275
Eco24I GRGCYC 2 cut(s) 88, 1452
Eco31I GGTCTC 1 cut(s) 1350
Eco47I GGWCC 3 cut(s) 526, 1060, 1167
Eco47III AGCGCT 1 cut(s) 866
Eco57I CTGAAG 2 cut(s) 714, 1145
Eco72I CACGTG 1 cut(s) 1136
Eco81I CCTNAGG 2 cut(s) 63, 1038
Eco88I CYCGRG 1 cut(s) 352
EcoNI CCTNNNNNAGG 1 cut(s) 1235
EcoO109I RGGNCCY 3 cut(s) 84, 268, 1060
EcoRII CCWGG 5 cut(s) 479, 605, 625, 967, 1062
EcoT14I CCWWGG 3 cut(s) 856, 876, 1275
EcoT38I GRGCYC 2 cut(s) 88, 1452
EgeI GGCGCC 2 cut(s) 181, 341
EheI GGCGCC 2 cut(s) 181, 341
ErhI CCWWGG 3 cut(s) 856, 876, 1275
FaqI GGGAC 2 cut(s) 223, 592
Fnu4HI GCNGC 7 cut(s) 330, 501, 535, 597, 904, 1364, 1553
FokI GGATG 2 cut(s) 1079, 1136
FriOI GRGCYC 2 cut(s) 88, 1452
Fsp4HI GCNGC 7 cut(s) 330, 501, 535, 597, 904, 1364, 1553
FspBI CTAG 4 cut(s) 162, 273, 390, 1564
GlaI GCGC 6 cut(s) 181, 341, 866, 1078, 1306, 1499
GluI GCNGC 7 cut(s) 330, 501, 535, 597, 904, 1364, 1553
GsaI CCCAGC 1 cut(s) 1528
GsuI CTGGAG 2 cut(s) 463, 598
HaeII RGCGCY 3 cut(s) 183, 343, 868
HaeIII GGCC 7 cut(s) 86, 269, 515, 537, 646, 702, 1463
HapII CCGG 6 cut(s) 183, 375, 591, 979, 1175, 1406
HhaI GCGC 6 cut(s) 182, 342, 867, 1079, 1307, 1500
Hin1I GRCGYC 2 cut(s) 180, 340
Hin6I GCGC 6 cut(s) 180, 340, 865, 1077, 1305, 1498
HinP1I GCGC 6 cut(s) 180, 340, 865, 1077, 1305, 1498
HindIII AAGCTT 1 cut(s) 1349
HinfI GANTC 8 cut(s) 70, 94, 165, 311, 660, 707, 740, 1184
HpaII CCGG 6 cut(s) 183, 375, 591, 979, 1175, 1406
HphI GGTGA 5 cut(s) 395, 460, 595, 893, 1138
Hpy166II GTNNAC 2 cut(s) 1252, 1321
Hpy188I TCNGA 2 cut(s) 75, 668
Hpy8I GTNNAC 2 cut(s) 1252, 1321
Hpy99I CGWCG 1 cut(s) 1445
HpyAV CCTTC 4 cut(s) 70, 149, 448, 1318
HpyCH4III ACNGT 1 cut(s) 1459
HpyCH4IV ACGT 4 cut(s) 674, 1135, 1248, 1479
HpyCH4V TGCA 9 cut(s) 23, 284, 397, 500, 1163, 1252, 1366, 1415, 1509
HpyF10VI GCNNNNNNNGC 7 cut(s) 732, 796, 841, 850, 1208, 1372, 1506
HpyF3I CTNAG 8 cut(s) 27, 63, 252, 795, 1038, 1203, 1381, 1556
HpySE526I ACGT 4 cut(s) 674, 1135, 1248, 1479
Hsp92I GRCGYC 2 cut(s) 180, 340
HspAI GCGC 6 cut(s) 180, 340, 865, 1077, 1305, 1498
KasI GGCGCC 2 cut(s) 179, 339
LmnI GCTCC 4 cut(s) 113, 367, 832, 1282
Lsp1109I GCAGC 5 cut(s) 341, 512, 583, 915, 1350
LweI GCATC 3 cut(s) 376, 487, 1189
MabI ACCWGGT 1 cut(s) 605
MaeI CTAG 4 cut(s) 162, 273, 390, 1564
MaeII ACGT 4 cut(s) 674, 1135, 1248, 1479
MaeIII GTNAC 3 cut(s) 322, 881, 1453
MboII GAAGA 6 cut(s) 103, 181, 506, 565, 655, 1138
MflI RGATCY 2 cut(s) 762, 1408
MhlI GDGCHC 5 cut(s) 88, 837, 994, 1254, 1452
MlsI TGGCCA 1 cut(s) 1463
MluCI AATT 5 cut(s) 9, 101, 871, 1085, 1465
MluNI TGGCCA 1 cut(s) 1463
Mly113I GGCGCC 2 cut(s) 180, 340
MlyI GAGTC 6 cut(s) 88, 174, 654, 701, 749, 1193
MmeI TCCRAC 2 cut(s) 775, 909
Mox20I TGGCCA 1 cut(s) 1463
MscI TGGCCA 1 cut(s) 1463
MseI TTAA 7 cut(s) 8, 453, 522, 810, 870, 891, 1224
MslI CAYNNNNRTG 2 cut(s) 402, 719
Msp20I TGGCCA 1 cut(s) 1463
MspA1I CMGCKG 2 cut(s) 844, 1363
MspI CCGG 6 cut(s) 183, 375, 591, 979, 1175, 1406
MspR9I CCNGG 6 cut(s) 481, 592, 607, 627, 969, 1064
Mva1269I GAATGC 2 cut(s) 1500, 1550
MvaI CCWGG 5 cut(s) 481, 607, 627, 969, 1064
MwoI GCNNNNNNNGC 7 cut(s) 732, 796, 841, 850, 1208, 1372, 1506
NarI GGCGCC 2 cut(s) 180, 340
NciI CCSGG 1 cut(s) 592
NcoI CCATGG 2 cut(s) 856, 876
NheI GCTAGC 1 cut(s) 389
NlaIV GGNNCC 6 cut(s) 85, 86, 115, 181, 270, 341
NmuCI GTSAC 2 cut(s) 881, 1453
PaeR7I CTCGAG 1 cut(s) 352
PagI TCATGA 2 cut(s) 1015, 1327
PcsI WCGNNNNNNNCGW 3 cut(s) 680, 906, 1449
PctI GAATGC 2 cut(s) 1500, 1550
PfeI GAWTC 2 cut(s) 70, 311
Pfl23II CGTACG 1 cut(s) 675
PkrI GCNGC 7 cut(s) 331, 502, 536, 598, 905, 1365, 1554
PleI GAGTC 6 cut(s) 88, 173, 654, 701, 748, 1192
PluTI GGCGCC 2 cut(s) 183, 343
PmaCI CACGTG 1 cut(s) 1136
PmlI CACGTG 1 cut(s) 1136
PpsI GAGTC 6 cut(s) 88, 173, 654, 701, 748, 1192
Ppu21I YACGTR 3 cut(s) 1136, 1249, 1480
PpuMI RGGWCCY 1 cut(s) 1060
Psp5II RGGWCCY 1 cut(s) 1060
Psp6I CCWGG 5 cut(s) 479, 605, 625, 967, 1062
PspCI CACGTG 1 cut(s) 1136
PspFI CCCAGC 1 cut(s) 1524
PspGI CCWGG 5 cut(s) 479, 605, 625, 967, 1062
PspLI CGTACG 1 cut(s) 675
PspN4I GGNNCC 6 cut(s) 85, 86, 115, 181, 270, 341
PspOMI GGGCCC 1 cut(s) 84
PspPI GGNCC 8 cut(s) 84, 85, 268, 514, 526, 645, 1060, 1167
PspPPI RGGWCCY 1 cut(s) 1060
PstI CTGCAG 1 cut(s) 1368
PstNI CAGNNNCTG 1 cut(s) 1063
PsuI RGATCY 2 cut(s) 762, 1408
PvuII CAGCTG 1 cut(s) 1363
RsaI GTAC 4 cut(s) 611, 677, 1181, 1301
RsaNI GTAC 4 cut(s) 610, 676, 1180, 1300
RseI CAYNNNNRTG 2 cut(s) 402, 719
SaqAI TTAA 7 cut(s) 8, 453, 522, 810, 870, 891, 1224
SatI GCNGC 7 cut(s) 330, 501, 535, 597, 904, 1364, 1553
Sau96I GGNCC 8 cut(s) 84, 85, 268, 514, 526, 645, 1060, 1167
ScaI AGTACT 1 cut(s) 1301
SchI GAGTC 6 cut(s) 88, 174, 654, 701, 749, 1193
ScrFI CCNGG 6 cut(s) 481, 592, 607, 627, 969, 1064
SduI GDGCHC 5 cut(s) 88, 837, 994, 1254, 1452
SexAI ACCWGGT 1 cut(s) 605
SfaNI GCATC 3 cut(s) 376, 487, 1189
SfcI CTRYAG 1 cut(s) 1364
SfoI GGCGCC 2 cut(s) 181, 341
Sfr274I CTCGAG 1 cut(s) 352
SgrAI CRCCGGYG 1 cut(s) 182
SinI GGWCC 3 cut(s) 526, 1060, 1167
SlaI CTCGAG 1 cut(s) 352
SmiMI CAYNNNNRTG 2 cut(s) 402, 719
SmlI CTYRAG 2 cut(s) 198, 352
SmoI CTYRAG 2 cut(s) 198, 352
SnaBI TACGTA 1 cut(s) 1480
Sse9I AATT 5 cut(s) 9, 101, 871, 1085, 1465
SsiI CCGC 4 cut(s) 534, 838, 844, 1271
SspDI GGCGCC 2 cut(s) 179, 339
SspI AATATT 1 cut(s) 460
SspMI CTAG 4 cut(s) 162, 273, 390, 1564
StyD4I CCNGG 6 cut(s) 479, 590, 605, 625, 967, 1062
StyI CCWWGG 3 cut(s) 856, 876, 1275
TaaI ACNGT 1 cut(s) 1459
TaiI ACGT 4 cut(s) 677, 1138, 1251, 1482
TaqI TCGA 6 cut(s) 245, 353, 705, 1236, 1354, 1440
TasI AATT 5 cut(s) 9, 101, 871, 1085, 1465
TatI WGTACW 1 cut(s) 1299
TauI GCSGC 1 cut(s) 537
TfiI GAWTC 2 cut(s) 70, 311
Tru1I TTAA 7 cut(s) 8, 453, 522, 810, 870, 891, 1224
Tru9I TTAA 7 cut(s) 8, 453, 522, 810, 870, 891, 1224
TscAI CASTG 2 cut(s) 1464, 1511
TseFI GTSAC 2 cut(s) 881, 1453
TseI GCWGC 6 cut(s) 329, 500, 596, 903, 1363, 1552
Tsp45I GTSAC 2 cut(s) 881, 1453
TspDTI ATGAA 5 cut(s) 17, 69, 1037, 1412, 1505
TspGWI ACGGA 1 cut(s) 1067
TspRI CASTG 2 cut(s) 1464, 1511
VneI GTGCAC 1 cut(s) 1250
VpaK11BI GGWCC 3 cut(s) 526, 1060, 1167
XagI CCTNNNNNAGG 1 cut(s) 1235
XhoI CTCGAG 1 cut(s) 352
XspI CTAG 4 cut(s) 162, 273, 390, 1564
ZrmI AGTACT 1 cut(s) 1301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.