Rmu_sc0006984.1_g000009

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006984.1
OG0000057
Physical Location & Seq
Forward (+)
41529 .. 42594
1066 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006984.1_g000009.1.cds

Sequence Viewer

Length: 840 bp
atggaaaaagcctttgcggaggaccgtcggcggcttgatgagttcacgatctcggtcaagaggcttgagctaggggcacaacaaacacaagggcaattggatggcatcaacccaaaaatgcagaagaaccacgaagagctgttggtcgcaagcaaacacatcgcttcagaagtcgcgacgatcgcaaagaaggatctaacgtcgcgacccagcaagtacataccaccaaatgctagagaaaaagcaagcggctggcagtacaaccacatccgctactgctcctgtttccccaatatgataggggaatacgtgcaccacgatccacctccagcaagccattatggtatcgaccgggttgaaattccagcgaaggtcaccgcagccacaaagggtcagccagcagtgggttttacgtcgcagacgtcaacccgacacaaaatgacccatggaggcggcatatctttggttaatcaggcttcacagacgccactgctgatctggccagttgatgatatagtggttcacccacctcctcctaatccaagatatataaggagagaagaggtagaagcaatgatcagggtcgcgaaccagaggcctaacctggaggaggcctaccacgggcgcttcccaccgcatattacagagacaccttatcctaggggatataagaacattacgttctctactttctcgggagaggaagtcgaaaatgccgcggcccatttggttaggtttcgagtacagtgtggccagtaccagaatgacgacaatctgaagtgtaacatctttgctacttctttatcggggtctgccttcacctggttcactaagctgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

279

Amino Acids

31.46

Weight (kDa)

8.8

Isoelectric Point (pI)

45.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000057)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00341 FvH4_2g18201 FvH4_2g24491 FvH4_2g24511 FvH4_3g22961 FvH4_3g33532 FvH4_3g33534 FvH4_4g05275 FvH4_4g12372 FvH4_5g20143 FvH4_7g12392
pyrus_communis pycom12g16120
rosa_chinensis RchiOBHm_Chr5g0023531 RchiOBHm_Chr6g0271201
rosa_laevigata RLG00000030639
rosa_multiflora Rmu_co8016136.1_g000001 Rmu_co8027180.1_g000001 Rmu_co8041016.1_g000001 Rmu_co8052812.1_g000001 Rmu_co8152468.1_g000001 Rmu_co8165796.1_g000001 Rmu_co8170214.1_g000001 Rmu_co8227433.1_g000001 Rmu_co8241379.1_g000001 Rmu_co8254305.1_g000001 Rmu_co8258647.1_g000001 Rmu_co8265535.1_g000002 Rmu_co8276845.1_g000001 Rmu_co8296303.1_g000001 Rmu_co8304827.1_g000001 Rmu_co8308345.1_g000001 Rmu_co8320493.1_g000002 Rmu_co8326955.1_g000001 Rmu_co8331007.1_g000001 Rmu_co8335625.1_g000001 Rmu_co8354465.1_g000001 Rmu_co8360201.1_g000001 Rmu_co8362075.1_g000002 Rmu_co8362991.1_g000001 Rmu_co8364567.1_g000001 Rmu_co8365273.1_g000001 Rmu_co8387267.1_g000001 Rmu_co8395251.1_g000002 Rmu_co8396677.1_g000001 Rmu_co8457659.1_g000001 Rmu_co8478117.1_g000001 Rmu_co8487163.1_g000001 Rmu_co8498169.1_g000001 Rmu_sc0000029.1_g000022 Rmu_sc0000063.1_g000007 Rmu_sc0000112.1_g000020 Rmu_sc0000146.1_g000006 Rmu_sc0000245.1_g000015 Rmu_sc0000276.1_g000036 Rmu_sc0000334.1_g000033 Rmu_sc0000334.1_g000034 Rmu_sc0000434.1_g000019 Rmu_sc0000441.1_g000118 Rmu_sc0000533.1_g000054 Rmu_sc0000533.1_g000055 Rmu_sc0000595.1_g000041 Rmu_sc0000663.1_g000019 Rmu_sc0000673.1_g000002 Rmu_sc0000698.1_g000102 Rmu_sc0000745.1_g000007 Rmu_sc0000768.1_g000018 Rmu_sc0000811.1_g000012 Rmu_sc0000826.1_g000009 Rmu_sc0000826.1_g000011 Rmu_sc0001051.1_g000042 Rmu_sc0001051.1_g000043 Rmu_sc0001148.1_g000014 Rmu_sc0001198.1_g000021 Rmu_sc0001227.1_g000008 Rmu_sc0001250.1_g000028 Rmu_sc0001395.1_g000019 Rmu_sc0001395.1_g000020 Rmu_sc0001396.1_g000002 Rmu_sc0001424.1_g000007 Rmu_sc0001455.1_g000025 Rmu_sc0001455.1_g000029 Rmu_sc0001499.1_g000036 Rmu_sc0001539.1_g000001 Rmu_sc0001562.1_g000027 Rmu_sc0001563.1_g000024 Rmu_sc0001719.1_g000022 Rmu_sc0001796.1_g000008 Rmu_sc0001884.1_g000022 Rmu_sc0001903.1_g000018 Rmu_sc0002041.1_g000012 Rmu_sc0002096.1_g000002 Rmu_sc0002126.1_g000027 Rmu_sc0002181.1_g000010 Rmu_sc0002259.1_g000004 Rmu_sc0002279.1_g000018 Rmu_sc0002312.1_g000060 Rmu_sc0002383.1_g000011 Rmu_sc0002401.1_g000012 Rmu_sc0002509.1_g000028 Rmu_sc0002569.1_g000008 Rmu_sc0002587.1_g000037 Rmu_sc0002665.1_g000006 Rmu_sc0002698.1_g000018 Rmu_sc0002724.1_g000002 Rmu_sc0002727.1_g000011 Rmu_sc0002927.1_g000055 Rmu_sc0002927.1_g000056 Rmu_sc0002943.1_g000009 Rmu_sc0002943.1_g000023 Rmu_sc0002998.1_g000001 Rmu_sc0003089.1_g000036 Rmu_sc0003127.1_g000022 Rmu_sc0003127.1_g000040 Rmu_sc0003207.1_g000010 Rmu_sc0003207.1_g000011 Rmu_sc0003275.1_g000034 Rmu_sc0003275.1_g000036 Rmu_sc0003337.1_g000047 Rmu_sc0003376.1_g000004 Rmu_sc0003522.1_g000024 Rmu_sc0003613.1_g000007 Rmu_sc0003708.1_g000026 Rmu_sc0003784.1_g000018 Rmu_sc0004079.1_g000005 Rmu_sc0004092.1_g000017 Rmu_sc0004168.1_g000058 Rmu_sc0004174.1_g000019 Rmu_sc0004199.1_g000049 Rmu_sc0004230.1_g000005 Rmu_sc0004283.1_g000021 Rmu_sc0004283.1_g000022 Rmu_sc0004314.1_g000017 Rmu_sc0004538.1_g000006 Rmu_sc0004542.1_g000011 Rmu_sc0004602.1_g000024 Rmu_sc0004641.1_g000006 Rmu_sc0004862.1_g000011 Rmu_sc0004941.1_g000043 Rmu_sc0005003.1_g000003 Rmu_sc0005112.1_g000018 Rmu_sc0005144.1_g000014 Rmu_sc0005266.1_g000014 Rmu_sc0005418.1_g000004 Rmu_sc0005627.1_g000006 Rmu_sc0005652.1_g000022 Rmu_sc0005747.1_g000032 Rmu_sc0005982.1_g000013 Rmu_sc0006050.1_g000017 Rmu_sc0006059.1_g000035 Rmu_sc0006128.1_g000002 Rmu_sc0006228.1_g000009 Rmu_sc0006243.1_g000009 Rmu_sc0006300.1_g000004 Rmu_sc0006463.1_g000007 Rmu_sc0006579.1_g000016 Rmu_sc0006595.1_g000011 Rmu_sc0006624.1_g000006 Rmu_sc0006624.1_g000007 Rmu_sc0006624.1_g000008 Rmu_sc0006674.1_g000025 Rmu_sc0006792.1_g000013 Rmu_sc0006872.1_g000022 Rmu_sc0006984.1_g000009 Rmu_sc0006984.1_g000010 Rmu_sc0006986.1_g000011 Rmu_sc0007016.1_g000001 Rmu_sc0007221.1_g000006 Rmu_sc0007222.1_g000005 Rmu_sc0007222.1_g000006 Rmu_sc0007251.1_g000001 Rmu_sc0007777.1_g000037 Rmu_sc0007826.1_g000018 Rmu_sc0008053.1_g000015 Rmu_sc0008502.1_g000006 Rmu_sc0008659.1_g000009 Rmu_sc0009045.1_g000009 Rmu_sc0009045.1_g000010 Rmu_sc0009060.1_g000012 Rmu_sc0009360.1_g000024 Rmu_sc0009431.1_g000001 Rmu_sc0009606.1_g000014 Rmu_sc0009774.1_g000001 Rmu_sc0009844.1_g000014 Rmu_sc0010313.1_g000001 Rmu_sc0010454.1_g000008 Rmu_sc0010543.1_g000016 Rmu_sc0010900.1_g000002 Rmu_sc0010925.1_g000009 Rmu_sc0011136.1_g000012 Rmu_sc0011534.1_g000004 Rmu_sc0011809.1_g000007 Rmu_sc0011917.1_g000005 Rmu_sc0012103.1_g000001 Rmu_sc0012287.1_g000001 Rmu_sc0012303.1_g000007 Rmu_sc0012344.1_g000009 Rmu_sc0012674.1_g000007 Rmu_sc0012686.1_g000001 Rmu_sc0012742.1_g000005 Rmu_sc0012746.1_g000026 Rmu_sc0012746.1_g000027 Rmu_sc0013419.1_g000008 Rmu_sc0014866.1_g000004 Rmu_sc0015325.1_g000011 Rmu_sc0015486.1_g000005 Rmu_sc0015651.1_g000002 Rmu_sc0015783.1_g000001 Rmu_sc0016387.1_g000009 Rmu_sc0017518.1_g000005 Rmu_sc0018480.1_g000001 Rmu_sc0018537.1_g000003 Rmu_sc0019200.1_g000002 Rmu_sc0019544.1_g000014 Rmu_sc0019544.1_g000015 Rmu_sc0019873.1_g000001 Rmu_sc0020392.1_g000001 Rmu_sc0020466.1_g000001 Rmu_sc0022008.1_g000001 Rmu_sc0022008.1_g000002 Rmu_sc0022274.1_g000001 Rmu_sc0023644.1_g000005 Rmu_sc0024657.1_g000001 Rmu_sc0024721.1_g000003 Rmu_sc0025790.1_g000001 Rmu_sc0026866.1_g000001 Rmu_sc0027363.1_g000002 Rmu_sc0027485.1_g000001 Rmu_sc0028394.1_g000001 Rmu_sc0033121.1_g000002 Rmu_sc0033838.1_g000001 Rmu_sc0035536.1_g000001 Rmu_sc0036296.1_g000001 Rmu_sc0036297.1_g000001 Rmu_sc0036298.1_g000001 Rmu_sc0036797.1_g000001 Rmu_sc0037010.1_g000001 Rmu_sc0037444.1_g000002 Rmu_sc0039012.1_g000002 Rmu_sc0040172.1_g000001 Rmu_sc0042083.1_g000001 Rmu_ssc0000018.1_g000001 Rmu_ssc0000171.1_g000032 Rmu_ssc0000213.1_g000064 Rmu_ssc0000213.1_g000096 Rmu_ssc0000262.1_g000017 Rmu_ssc0000295.1_g000036 Rmu_ssc0000343.1_g000008 Rmu_ssc0000398.1_g000003 Rmu_ssc0000400.1_g000085 Rmu_ssc0000438.1_g000007 Rmu_ssc0000478.1_g000003
rosa_roxburghii Rroxscaffold_166G00440710 Rroxscaffold_166G00440720 Rroxscaffold_174G00435300 Rroxscaffold_174G00435310 Rroxscaffold_177G00434290 Rroxscaffold_177G00434300 Rroxscaffold_177G00434310 Rroxscaffold_178G00437310 Rroxscaffold_1G00002500 Rroxscaffold_1G00004730 Rroxscaffold_1G00008660 Rroxscaffold_1G00008670 Rroxscaffold_1G00008680 Rroxscaffold_1G00008690 Rroxscaffold_1G00010260 Rroxscaffold_1G00015670 Rroxscaffold_1G00021140 Rroxscaffold_1G00024380 Rroxscaffold_1G00032420 Rroxscaffold_1G00050600 Rroxscaffold_1G00050610 Rroxscaffold_1G00055970 Rroxscaffold_1G00066220 Rroxscaffold_2G00085370 Rroxscaffold_2G00092350 Rroxscaffold_2G00092360 Rroxscaffold_2G00093350 Rroxscaffold_2G00097090 Rroxscaffold_2G00108040 Rroxscaffold_2G00109970 Rroxscaffold_2G00111470 Rroxscaffold_2G00111480 Rroxscaffold_2G00112000 Rroxscaffold_2G00112060 Rroxscaffold_2G00129160 Rroxscaffold_2G00132340 Rroxscaffold_2G00136720 Rroxscaffold_2G00152910 Rroxscaffold_3G00223160 Rroxscaffold_3G00223170 Rroxscaffold_3G00223520 Rroxscaffold_3G00230980 Rroxscaffold_3G00245030 Rroxscaffold_3G00259050 Rroxscaffold_3G00259060 Rroxscaffold_3G00259070 Rroxscaffold_3G00267470 Rroxscaffold_3G00272040 Rroxscaffold_3G00272440 Rroxscaffold_3G00272450 Rroxscaffold_4G00285860 Rroxscaffold_4G00285870 Rroxscaffold_4G00294380 Rroxscaffold_4G00294390 Rroxscaffold_4G00297890 Rroxscaffold_4G00298150 Rroxscaffold_4G00303090 Rroxscaffold_4G00306480 Rroxscaffold_4G00306680 Rroxscaffold_4G00310490 Rroxscaffold_4G00310630 Rroxscaffold_4G00310670 Rroxscaffold_4G00310680 Rroxscaffold_4G00310690 Rroxscaffold_4G00317930 Rroxscaffold_4G00320190 Rroxscaffold_4G00323370 Rroxscaffold_4G00323380 Rroxscaffold_4G00324200 Rroxscaffold_4G00331220 Rroxscaffold_5G00339230 Rroxscaffold_5G00341260 Rroxscaffold_5G00343120 Rroxscaffold_5G00345440 Rroxscaffold_5G00345450 Rroxscaffold_5G00353190 Rroxscaffold_5G00353420 Rroxscaffold_5G00356560 Rroxscaffold_5G00359790 Rroxscaffold_5G00381710 Rroxscaffold_5G00381720 Rroxscaffold_5G00386250 Rroxscaffold_5G00387520 Rroxscaffold_6G00390180 Rroxscaffold_6G00392810 Rroxscaffold_6G00401230 Rroxscaffold_6G00402640 Rroxscaffold_6G00405640 Rroxscaffold_6G00405650 Rroxscaffold_6G00405850 Rroxscaffold_6G00405860 Rroxscaffold_6G00412020 Rroxscaffold_6G00415690 Rroxscaffold_6G00415700 Rroxscaffold_7G00168110 Rroxscaffold_7G00178950 Rroxscaffold_7G00178960 Rroxscaffold_7G00193670 Rroxscaffold_7G00203020 Rroxscaffold_7G00203340 Rroxscaffold_7G00203550 Rroxscaffold_7G00207220 Rroxscaffold_7G00207250 Rroxscaffold_7G00207430 Rroxscaffold_7G00209310 Rroxscaffold_7G00211530 Rroxscaffold_7G00211540 Rroxscaffold_7G00214160 Rroxscaffold_7G00216040 Rroxscaffold_7G00216800
rosa_samantha Rh1AG276800 Rh1CG260400 Rh3CG366700
rosa_wichuraiana Rw1G001440 Rw3G029210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 425
AccII CGCG 4 cut(s) 176, 205, 587, 719
AciI CCGC 9 cut(s) 17, 31, 249, 271, 378, 453, 635, 717, 719
AclWI GGATC 2 cut(s) 201, 314
AcoI YGGCCR 2 cut(s) 500, 751
AcsI RAATTY 1 cut(s) 360
AcuI CTGAAG 2 cut(s) 150, 797
AcyI GRCGYC 2 cut(s) 422, 485
AfaI GTAC 4 cut(s) 218, 260, 744, 758
AfiI CCNNNNNNNGG 4 cut(s) 404, 610, 621, 822
AgsI TTSAA 1 cut(s) 359
AjnI CCWGG 2 cut(s) 603, 821
AluBI AGCT 3 cut(s) 70, 139, 835
AluI AGCT 3 cut(s) 70, 139, 835
Alw21I GWGCWC 1 cut(s) 315
Alw26I GTCTC 1 cut(s) 641
Alw44I GTGCAC 1 cut(s) 311
AlwI GGATC 2 cut(s) 201, 314
Ama87I CYCGRG 1 cut(s) 694
AoxI GGCC 5 cut(s) 500, 596, 612, 720, 751
ApaLI GTGCAC 1 cut(s) 311
ApeKI GCWGC 1 cut(s) 380
ApoI RAATTY 1 cut(s) 360
AspA2I CCTAGG 1 cut(s) 659
AspLEI GCGC 1 cut(s) 627
AspS9I GGNCC 2 cut(s) 22, 721
AsuC2I CCSGG 1 cut(s) 353
AsuHPI GGTGA 3 cut(s) 367, 515, 811
AvaI CYCGRG 1 cut(s) 694
AvaII GGWCC 1 cut(s) 22
AvrII CCTAGG 1 cut(s) 659
BaeGI GKGCMC 2 cut(s) 79, 315
BalI TGGCCA 2 cut(s) 502, 753
Bbv12I GWGCWC 1 cut(s) 315
BbvI GCAGC 1 cut(s) 392
BccI CCATC 1 cut(s) 95
BcgI CGANNNNNNTGC 2 cut(s) 142, 176
BciT130I CCWGG 2 cut(s) 605, 823
BclI TGATCA 1 cut(s) 576
BcnI CCSGG 1 cut(s) 353
BcoDI GTCTC 1 cut(s) 641
BfaI CTAG 3 cut(s) 71, 234, 660
BfoI RGCGCY 1 cut(s) 628
BisI GCNGC 6 cut(s) 32, 250, 381, 454, 717, 720
BlnI CCTAGG 1 cut(s) 659
BlsI GCNGC 6 cut(s) 33, 251, 382, 455, 718, 721
Bme1390I CCNGG 3 cut(s) 353, 605, 823
Bme18I GGWCC 1 cut(s) 22
BmeT110I CYCGRG 1 cut(s) 694
BmgT120I GGNCC 2 cut(s) 22, 721
BmrFI CCNGG 3 cut(s) 353, 605, 823
BmsI GCATC 1 cut(s) 114
BpmI CTGGAG 2 cut(s) 312, 626
BpuEI CTTGAG 1 cut(s) 86
BpuMI CCSGG 1 cut(s) 353
BsaAI YACGTR 1 cut(s) 310
BsaHI GRCGYC 2 cut(s) 422, 485
BsaJI CCNNGG 4 cut(s) 445, 619, 659, 717
BsaXI ACNNNNNCTCC 2 cut(s) 690, 720
Bsc4I CCNNNNNNNGG 4 cut(s) 404, 610, 621, 822
Bse1I ACTGG 2 cut(s) 503, 754
Bse3DI GCAATG 1 cut(s) 579
BseBI CCWGG 2 cut(s) 605, 823
BseDI CCNNGG 4 cut(s) 445, 619, 659, 717
BseGI GGATG 2 cut(s) 106, 267
BseLI CCNNNNNNNGG 4 cut(s) 404, 610, 621, 822
BseMI GCAATG 1 cut(s) 579
BseNI ACTGG 2 cut(s) 503, 754
BseRI GAGGAG 2 cut(s) 522, 623
BseSI GKGCMC 2 cut(s) 79, 315
BseXI GCAGC 1 cut(s) 392
BseYI CCCAGC 1 cut(s) 209
Bsh1236I CGCG 4 cut(s) 176, 205, 587, 719
Bsh1285I CGRYCG 2 cut(s) 183, 352
BshFI GGCC 5 cut(s) 502, 598, 614, 722, 753
BsiEI CGRYCG 2 cut(s) 183, 352
BsiHKAI GWGCWC 1 cut(s) 315
BsiHKCI CYCGRG 1 cut(s) 694
BsiSI CCGG 1 cut(s) 352
BslI CCNNNNNNNGG 4 cut(s) 404, 610, 621, 822
BsmAI GTCTC 1 cut(s) 641
BsnI GGCC 5 cut(s) 502, 598, 614, 722, 753
BsoBI CYCGRG 1 cut(s) 694
Bsp1286I GDGCHC 2 cut(s) 79, 315
Bsp143I GATC 6 cut(s) 48, 180, 193, 319, 495, 576
Bsp19I CCATGG 1 cut(s) 445
Bsp68I TCGCGA 3 cut(s) 176, 205, 587
BspACI CCGC 9 cut(s) 17, 31, 249, 271, 378, 453, 635, 717, 719
BspANI GGCC 5 cut(s) 502, 598, 614, 722, 753
BspFNI CGCG 4 cut(s) 176, 205, 587, 719
BspPI GGATC 2 cut(s) 201, 314
BspQI GCTCTTC 1 cut(s) 129
BsrDI GCAATG 1 cut(s) 579
BsrI ACTGG 2 cut(s) 503, 754
BssECI CCNNGG 4 cut(s) 445, 619, 659, 717
BssMI GATC 6 cut(s) 48, 180, 193, 319, 495, 576
BssNI GRCGYC 2 cut(s) 422, 485
BssT1I CCWWGG 2 cut(s) 445, 659
Bst2UI CCWGG 2 cut(s) 605, 823
Bst4CI ACNGT 2 cut(s) 26, 747
Bst6I CTCTTC 2 cut(s) 129, 555
BstACI GRCGYC 2 cut(s) 422, 485
BstBAI YACGTR 1 cut(s) 310
BstC8I GCNNGC 5 cut(s) 151, 247, 254, 334, 399
BstDEI CTNAG 1 cut(s) 831
BstDSI CCRYGG 3 cut(s) 445, 619, 717
BstEII GGTNACC 1 cut(s) 373
BstENI CCTNNNNNAGG 1 cut(s) 608
BstF5I GGATG 2 cut(s) 106, 267
BstFNI CGCG 4 cut(s) 176, 205, 587, 719
BstH2I RGCGCY 1 cut(s) 628
BstHHI GCGC 1 cut(s) 627
BstKTI GATC 6 cut(s) 51, 183, 196, 322, 498, 579
BstMAI GTCTC 1 cut(s) 641
BstMBI GATC 6 cut(s) 48, 180, 193, 319, 495, 576
BstMCI CGRYCG 2 cut(s) 183, 352
BstMWI GCNNNNNNNGC 2 cut(s) 182, 499
BstNI CCWGG 2 cut(s) 605, 823
BstPI GGTNACC 1 cut(s) 373
BstSCI CCNGG 3 cut(s) 351, 603, 821
BstSLI GKGCMC 2 cut(s) 79, 315
BstUI CGCG 4 cut(s) 176, 205, 587, 719
BstV1I GCAGC 1 cut(s) 392
BstX2I RGATCY 1 cut(s) 193
BstYI RGATCY 1 cut(s) 193
BsuRI GGCC 5 cut(s) 502, 598, 614, 722, 753
BtgI CCRYGG 3 cut(s) 445, 619, 717
BtgZI GCGATG 1 cut(s) 145
BtsCI GGATG 2 cut(s) 106, 267
BtsI GCAGTG 2 cut(s) 408, 488
BtsIMutI CAGTG 3 cut(s) 408, 488, 752
BtuMI TCGCGA 3 cut(s) 176, 205, 587
Cac8I GCNNGC 5 cut(s) 151, 247, 254, 334, 399
CfoI GCGC 1 cut(s) 627
Cfr13I GGNCC 2 cut(s) 22, 721
Cfr42I CCGCGG 1 cut(s) 720
CseI GACGC 1 cut(s) 493
CsiI ACCWGGT 1 cut(s) 821
Csp6I GTAC 4 cut(s) 217, 259, 743, 757
CviAII CATG 1 cut(s) 446
CviQI GTAC 4 cut(s) 217, 259, 743, 757
DdeI CTNAG 1 cut(s) 831
DpnI GATC 6 cut(s) 50, 182, 195, 321, 497, 578
DpnII GATC 6 cut(s) 48, 180, 193, 319, 495, 576
EaeI YGGCCR 2 cut(s) 500, 751
Eam1104I CTCTTC 2 cut(s) 129, 555
EarI CTCTTC 2 cut(s) 129, 555
Eco130I CCWWGG 2 cut(s) 445, 659
Eco147I AGGCCT 2 cut(s) 598, 614
Eco47I GGWCC 1 cut(s) 22
Eco57I CTGAAG 2 cut(s) 150, 797
Eco88I CYCGRG 1 cut(s) 694
Eco91I GGTNACC 1 cut(s) 373
EcoNI CCTNNNNNAGG 1 cut(s) 608
EcoO65I GGTNACC 1 cut(s) 373
EcoRII CCWGG 2 cut(s) 603, 821
EcoT14I CCWWGG 2 cut(s) 445, 659
ErhI CCWWGG 2 cut(s) 445, 659
FaeI CATG 1 cut(s) 449
FatI CATG 1 cut(s) 445
FbaI TGATCA 1 cut(s) 576
Fnu4HI GCNGC 6 cut(s) 32, 250, 381, 454, 717, 720
FokI GGATG 2 cut(s) 113, 254
Fsp4HI GCNGC 6 cut(s) 32, 250, 381, 454, 717, 720
FspBI CTAG 3 cut(s) 71, 234, 660
GlaI GCGC 1 cut(s) 626
GluI GCNGC 6 cut(s) 32, 250, 381, 454, 717, 720
GsaI CCCAGC 1 cut(s) 213
GsuI CTGGAG 2 cut(s) 312, 626
HaeII RGCGCY 1 cut(s) 628
HaeIII GGCC 5 cut(s) 502, 598, 614, 722, 753
HapII CCGG 1 cut(s) 352
HgaI GACGC 1 cut(s) 493
HhaI GCGC 1 cut(s) 627
Hin1I GRCGYC 2 cut(s) 422, 485
Hin1II CATG 1 cut(s) 449
Hin6I GCGC 1 cut(s) 625
HinP1I GCGC 1 cut(s) 625
HincII GTYRAC 1 cut(s) 426
HindII GTYRAC 1 cut(s) 426
HpaII CCGG 1 cut(s) 352
HphI GGTGA 3 cut(s) 367, 515, 811
Hpy166II GTNNAC 5 cut(s) 45, 313, 426, 523, 828
Hpy188I TCNGA 2 cut(s) 169, 777
Hpy188III TCNNGA 6 cut(s) 46, 58, 175, 204, 586, 696
Hpy8I GTNNAC 5 cut(s) 45, 313, 426, 523, 828
Hpy99I CGWCG 4 cut(s) 30, 181, 205, 418
HpyAV CCTTC 3 cut(s) 184, 364, 826
HpyCH4III ACNGT 2 cut(s) 26, 747
HpyCH4IV ACGT 5 cut(s) 200, 309, 413, 422, 680
HpyCH4V TGCA 2 cut(s) 121, 313
HpyF10VI GCNNNNNNNGC 2 cut(s) 182, 499
HpyF3I CTNAG 1 cut(s) 831
HpySE526I ACGT 5 cut(s) 200, 309, 413, 422, 680
Hsp92I GRCGYC 2 cut(s) 422, 485
Hsp92II CATG 1 cut(s) 449
HspAI GCGC 1 cut(s) 625
Ksp22I TGATCA 1 cut(s) 576
KspI CCGCGG 1 cut(s) 720
Kzo9I GATC 6 cut(s) 48, 180, 193, 319, 495, 576
LguI GCTCTTC 1 cut(s) 129
LmnI GCTCC 1 cut(s) 284
Lsp1109I GCAGC 1 cut(s) 392
LweI GCATC 1 cut(s) 114
MabI ACCWGGT 1 cut(s) 821
MaeI CTAG 3 cut(s) 71, 234, 660
MaeII ACGT 5 cut(s) 200, 309, 413, 422, 680
MaeIII GTNAC 2 cut(s) 373, 782
MalI GATC 6 cut(s) 50, 182, 195, 321, 497, 578
MboI GATC 6 cut(s) 48, 180, 193, 319, 495, 576
MboII GAAGA 3 cut(s) 136, 146, 572
MfeI CAATTG 1 cut(s) 95
MflI RGATCY 1 cut(s) 193
MhlI GDGCHC 2 cut(s) 79, 315
MlsI TGGCCA 2 cut(s) 502, 753
MluCI AATT 2 cut(s) 95, 360
MluNI TGGCCA 2 cut(s) 502, 753
Mox20I TGGCCA 2 cut(s) 502, 753
MscI TGGCCA 2 cut(s) 502, 753
MseI TTAA 1 cut(s) 468
Msp20I TGGCCA 2 cut(s) 502, 753
MspA1I CMGCKG 1 cut(s) 719
MspI CCGG 1 cut(s) 352
MspR9I CCNGG 3 cut(s) 353, 605, 823
MunI CAATTG 1 cut(s) 95
MvaI CCWGG 2 cut(s) 605, 823
MvnI CGCG 4 cut(s) 176, 205, 587, 719
MwoI GCNNNNNNNGC 2 cut(s) 182, 499
NciI CCSGG 1 cut(s) 353
NcoI CCATGG 1 cut(s) 445
NdeII GATC 6 cut(s) 48, 180, 193, 319, 495, 576
NlaIII CATG 1 cut(s) 449
NmuCI GTSAC 1 cut(s) 373
NruI TCGCGA 3 cut(s) 176, 205, 587
PceI AGGCCT 2 cut(s) 598, 614
PciSI GCTCTTC 1 cut(s) 129
PcsI WCGNNNNNNNCGW 2 cut(s) 315, 419
PkrI GCNGC 6 cut(s) 33, 251, 382, 455, 718, 721
Ple19I CGATCG 1 cut(s) 183
Ppu21I YACGTR 1 cut(s) 310
Psp6I CCWGG 2 cut(s) 603, 821
PspEI GGTNACC 1 cut(s) 373
PspFI CCCAGC 1 cut(s) 209
PspGI CCWGG 2 cut(s) 603, 821
PspPI GGNCC 2 cut(s) 22, 721
PsuI RGATCY 1 cut(s) 193
PvuI CGATCG 1 cut(s) 183
RruI TCGCGA 3 cut(s) 176, 205, 587
RsaI GTAC 4 cut(s) 218, 260, 744, 758
RsaNI GTAC 4 cut(s) 217, 259, 743, 757
SacII CCGCGG 1 cut(s) 720
SapI GCTCTTC 1 cut(s) 129
SaqAI TTAA 1 cut(s) 468
SatI GCNGC 6 cut(s) 32, 250, 381, 454, 717, 720
Sau3AI GATC 6 cut(s) 48, 180, 193, 319, 495, 576
Sau96I GGNCC 2 cut(s) 22, 721
ScrFI CCNGG 3 cut(s) 353, 605, 823
SduI GDGCHC 2 cut(s) 79, 315
SexAI ACCWGGT 1 cut(s) 821
SfaNI GCATC 1 cut(s) 114
Sfr303I CCGCGG 1 cut(s) 720
SgrBI CCGCGG 1 cut(s) 720
SinI GGWCC 1 cut(s) 22
SmlI CTYRAG 1 cut(s) 65
SmoI CTYRAG 1 cut(s) 65
Sse9I AATT 2 cut(s) 95, 360
SseBI AGGCCT 2 cut(s) 598, 614
SsiI CCGC 9 cut(s) 17, 31, 249, 271, 378, 453, 635, 717, 719
SspMI CTAG 3 cut(s) 71, 234, 660
StuI AGGCCT 2 cut(s) 598, 614
StyD4I CCNGG 3 cut(s) 351, 603, 821
StyI CCWWGG 2 cut(s) 445, 659
TaaI ACNGT 2 cut(s) 26, 747
TaiI ACGT 5 cut(s) 203, 312, 416, 425, 683
TaqI TCGA 3 cut(s) 348, 708, 739
TaqII GACCGA 1 cut(s) 43
TasI AATT 2 cut(s) 95, 360
TatI WGTACW 3 cut(s) 216, 258, 742
TauI GCSGC 5 cut(s) 34, 252, 456, 719, 722
Tru1I TTAA 1 cut(s) 468
Tru9I TTAA 1 cut(s) 468
TscAI CASTG 3 cut(s) 408, 495, 752
TseFI GTSAC 1 cut(s) 373
TseI GCWGC 1 cut(s) 380
Tsp45I GTSAC 1 cut(s) 373
TspRI CASTG 3 cut(s) 408, 495, 752
VneI GTGCAC 1 cut(s) 311
VpaK11BI GGWCC 1 cut(s) 22
XagI CCTNNNNNAGG 1 cut(s) 608
XapI RAATTY 1 cut(s) 360
XcmI CCANNNNNNNNNTGG 1 cut(s) 495
XmaJI CCTAGG 1 cut(s) 659
XspI CTAG 3 cut(s) 71, 234, 660
ZraI GACGTC 1 cut(s) 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.