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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 460 |
| AccI | GTMKAC | 1 cut(s) | 266 |
| AccII | CGCG | 1 cut(s) | 487 |
| AclWI | GGATC | 1 cut(s) | 86 |
| AcuI | CTGAAG | 1 cut(s) | 147 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 58 |
| AjnI | CCWGG | 3 cut(s) | 8, 40, 510 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 239, 271 |
| AluBI | AGCT | 4 cut(s) | 79, 125, 166, 226 |
| AluI | AGCT | 4 cut(s) | 79, 125, 166, 226 |
| Alw21I | GWGCWC | 1 cut(s) | 168 |
| AlwI | GGATC | 1 cut(s) | 86 |
| AoxI | GGCC | 2 cut(s) | 186, 462 |
| ApeKI | GCWGC | 2 cut(s) | 62, 79 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 204, 236 |
| AspLEI | GCGC | 1 cut(s) | 289 |
| AspS9I | GGNCC | 5 cut(s) | 30, 187, 357, 427, 475 |
| AsuHPI | GGTGA | 2 cut(s) | 235, 459 |
| AvaII | GGWCC | 4 cut(s) | 30, 357, 427, 475 |
| BanII | GRGCYC | 1 cut(s) | 168 |
| Bbv12I | GWGCWC | 1 cut(s) | 168 |
| BbvI | GCAGC | 2 cut(s) | 49, 66 |
| BciT130I | CCWGG | 3 cut(s) | 10, 42, 512 |
| BfaI | CTAG | 2 cut(s) | 386, 399 |
| BfuAI | ACCTGC | 1 cut(s) | 460 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 284, 461 |
| BisI | GCNGC | 2 cut(s) | 63, 80 |
| BlsI | GCNGC | 2 cut(s) | 64, 81 |
| Bme1390I | CCNGG | 3 cut(s) | 10, 42, 512 |
| Bme18I | GGWCC | 4 cut(s) | 30, 357, 427, 475 |
| BmgT120I | GGNCC | 5 cut(s) | 30, 187, 357, 427, 475 |
| BmiI | GGNNCC | 2 cut(s) | 31, 429 |
| BmrFI | CCNGG | 3 cut(s) | 10, 42, 512 |
| BmsI | GCATC | 3 cut(s) | 265, 479, 516 |
| BpuEI | CTTGAG | 1 cut(s) | 212 |
| BsaWI | WCCGGW | 1 cut(s) | 51 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 58 |
| Bse1I | ACTGG | 2 cut(s) | 218, 470 |
| Bse3DI | GCAATG | 1 cut(s) | 267 |
| BseBI | CCWGG | 3 cut(s) | 10, 42, 512 |
| BseGI | GGATG | 3 cut(s) | 10, 427, 507 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 58 |
| BseMI | GCAATG | 1 cut(s) | 267 |
| BseMII | CTCAG | 1 cut(s) | 243 |
| BseNI | ACTGG | 2 cut(s) | 218, 470 |
| BseRI | GAGGAG | 1 cut(s) | 155 |
| BseXI | GCAGC | 2 cut(s) | 49, 66 |
| Bsh1236I | CGCG | 1 cut(s) | 487 |
| BshFI | GGCC | 2 cut(s) | 188, 464 |
| BsiHKAI | GWGCWC | 1 cut(s) | 168 |
| BsiSI | CCGG | 1 cut(s) | 52 |
| BslFI | GGGAC | 3 cut(s) | 43, 413, 417 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 58 |
| BsmFI | GGGAC | 3 cut(s) | 43, 413, 417 |
| BsnI | GGCC | 2 cut(s) | 188, 464 |
| Bsp1286I | GDGCHC | 1 cut(s) | 168 |
| Bsp143I | GATC | 1 cut(s) | 91 |
| Bsp68I | TCGCGA | 1 cut(s) | 487 |
| BspANI | GGCC | 2 cut(s) | 188, 464 |
| BspCNI | CTCAG | 1 cut(s) | 244 |
| BspFNI | CGCG | 1 cut(s) | 487 |
| BspLI | GGNNCC | 2 cut(s) | 31, 429 |
| BspMI | ACCTGC | 1 cut(s) | 460 |
| BspPI | GGATC | 1 cut(s) | 86 |
| BsrDI | GCAATG | 1 cut(s) | 267 |
| BsrI | ACTGG | 2 cut(s) | 218, 470 |
| BssMI | GATC | 1 cut(s) | 91 |
| BssNAI | GTATAC | 1 cut(s) | 267 |
| Bst1107I | GTATAC | 1 cut(s) | 267 |
| Bst2UI | CCWGG | 3 cut(s) | 10, 42, 512 |
| Bst4CI | ACNGT | 2 cut(s) | 58, 107 |
| Bst6I | CTCTTC | 3 cut(s) | 105, 132, 519 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 452 |
| BstC8I | GCNNGC | 1 cut(s) | 485 |
| BstDEI | CTNAG | 1 cut(s) | 252 |
| BstF5I | GGATG | 3 cut(s) | 10, 427, 507 |
| BstFNI | CGCG | 1 cut(s) | 487 |
| BstHHI | GCGC | 1 cut(s) | 289 |
| BstKTI | GATC | 1 cut(s) | 94 |
| BstMBI | GATC | 1 cut(s) | 91 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 223, 284, 452, 461, 489 |
| BstNI | CCWGG | 3 cut(s) | 10, 42, 512 |
| BstSCI | CCNGG | 3 cut(s) | 8, 40, 510 |
| BstUI | CGCG | 1 cut(s) | 487 |
| BstV1I | GCAGC | 2 cut(s) | 49, 66 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 322 |
| BstZ17I | GTATAC | 1 cut(s) | 267 |
| BsuRI | GGCC | 2 cut(s) | 188, 464 |
| BtgZI | GCGATG | 1 cut(s) | 502 |
| BtsCI | GGATG | 3 cut(s) | 10, 427, 507 |
| BtsIMutI | CAGTG | 2 cut(s) | 112, 477 |
| BtuMI | TCGCGA | 1 cut(s) | 487 |
| BveI | ACCTGC | 1 cut(s) | 460 |
| Cac8I | GCNNGC | 1 cut(s) | 485 |
| CfoI | GCGC | 1 cut(s) | 289 |
| Cfr13I | GGNCC | 5 cut(s) | 30, 187, 357, 427, 475 |
| CviAII | CATG | 2 cut(s) | 290, 521 |
| CviJI | RGCY | 9 cut(s) | 62, 79, 125, 166, 188, 217, 226, 314, 464 |
| CviKI_1 | RGCY | 9 cut(s) | 62, 79, 125, 166, 188, 217, 226, 314, 464 |
| DdeI | CTNAG | 1 cut(s) | 252 |
| DpnI | GATC | 1 cut(s) | 93 |
| DpnII | GATC | 1 cut(s) | 91 |
| DraI | TTTAAA | 1 cut(s) | 69 |
| Eam1104I | CTCTTC | 3 cut(s) | 105, 132, 519 |
| EarI | CTCTTC | 3 cut(s) | 105, 132, 519 |
| Ecl136II | GAGCTC | 1 cut(s) | 166 |
| Eco147I | AGGCCT | 1 cut(s) | 464 |
| Eco24I | GRGCYC | 1 cut(s) | 168 |
| Eco47I | GGWCC | 4 cut(s) | 30, 357, 427, 475 |
| Eco53kI | GAGCTC | 1 cut(s) | 166 |
| Eco57I | CTGAAG | 1 cut(s) | 147 |
| EcoICRI | GAGCTC | 1 cut(s) | 166 |
| EcoO109I | RGGNCCY | 2 cut(s) | 30, 427 |
| EcoRII | CCWGG | 3 cut(s) | 8, 40, 510 |
| EcoT38I | GRGCYC | 1 cut(s) | 168 |
| FaeI | CATG | 2 cut(s) | 293, 524 |
| FaqI | GGGAC | 3 cut(s) | 43, 413, 417 |
| FatI | CATG | 2 cut(s) | 289, 520 |
| FauNDI | CATATG | 1 cut(s) | 88 |
| FblI | GTMKAC | 1 cut(s) | 266 |
| Fnu4HI | GCNGC | 2 cut(s) | 63, 80 |
| FokI | GGATG | 3 cut(s) | 17, 434, 494 |
| FriOI | GRGCYC | 1 cut(s) | 168 |
| Fsp4HI | GCNGC | 2 cut(s) | 63, 80 |
| FspBI | CTAG | 2 cut(s) | 386, 399 |
| GlaI | GCGC | 1 cut(s) | 288 |
| GluI | GCNGC | 2 cut(s) | 63, 80 |
| HaeIII | GGCC | 2 cut(s) | 188, 464 |
| HapII | CCGG | 1 cut(s) | 52 |
| HhaI | GCGC | 1 cut(s) | 289 |
| Hin1II | CATG | 2 cut(s) | 293, 524 |
| Hin6I | GCGC | 1 cut(s) | 287 |
| HinP1I | GCGC | 1 cut(s) | 287 |
| HpaII | CCGG | 1 cut(s) | 52 |
| HphI | GGTGA | 2 cut(s) | 235, 459 |
| Hpy166II | GTNNAC | 1 cut(s) | 267 |
| Hpy188I | TCNGA | 1 cut(s) | 253 |
| Hpy188III | TCNNGA | 1 cut(s) | 486 |
| Hpy8I | GTNNAC | 1 cut(s) | 267 |
| HpyAV | CCTTC | 3 cut(s) | 250, 407, 436 |
| HpyCH4III | ACNGT | 2 cut(s) | 58, 107 |
| HpyCH4V | TGCA | 1 cut(s) | 492 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 223, 284, 452, 461, 489 |
| HpyF3I | CTNAG | 1 cut(s) | 252 |
| Hsp92II | CATG | 2 cut(s) | 293, 524 |
| HspAI | GCGC | 1 cut(s) | 287 |
| Kzo9I | GATC | 1 cut(s) | 91 |
| Lsp1109I | GCAGC | 2 cut(s) | 49, 66 |
| LweI | GCATC | 3 cut(s) | 265, 479, 516 |
| MaeI | CTAG | 2 cut(s) | 386, 399 |
| MaeIII | GTNAC | 1 cut(s) | 516 |
| MalI | GATC | 1 cut(s) | 93 |
| MboI | GATC | 1 cut(s) | 91 |
| MboII | GAAGA | 7 cut(s) | 25, 122, 140, 149, 186, 451, 536 |
| MhlI | GDGCHC | 1 cut(s) | 168 |
| MluCI | AATT | 2 cut(s) | 352, 377 |
| MseI | TTAA | 3 cut(s) | 68, 380, 392 |
| MslI | CAYNNNNRTG | 2 cut(s) | 320, 512 |
| MspA1I | CMGCKG | 1 cut(s) | 79 |
| MspI | CCGG | 1 cut(s) | 52 |
| MspR9I | CCNGG | 3 cut(s) | 10, 42, 512 |
| MvaI | CCWGG | 3 cut(s) | 10, 42, 512 |
| MvnI | CGCG | 1 cut(s) | 487 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 223, 284, 452, 461, 489 |
| NdeI | CATATG | 1 cut(s) | 88 |
| NdeII | GATC | 1 cut(s) | 91 |
| NlaIII | CATG | 2 cut(s) | 293, 524 |
| NlaIV | GGNNCC | 2 cut(s) | 31, 429 |
| NmeAIII | GCCGAG | 1 cut(s) | 164 |
| NmuCI | GTSAC | 1 cut(s) | 516 |
| NruI | TCGCGA | 1 cut(s) | 487 |
| PceI | AGGCCT | 1 cut(s) | 464 |
| PkrI | GCNGC | 2 cut(s) | 64, 81 |
| PpuMI | RGGWCCY | 2 cut(s) | 30, 427 |
| Psp124BI | GAGCTC | 1 cut(s) | 168 |
| Psp5II | RGGWCCY | 2 cut(s) | 30, 427 |
| Psp6I | CCWGG | 3 cut(s) | 8, 40, 510 |
| PspGI | CCWGG | 3 cut(s) | 8, 40, 510 |
| PspN4I | GGNNCC | 2 cut(s) | 31, 429 |
| PspPI | GGNCC | 5 cut(s) | 30, 187, 357, 427, 475 |
| PspPPI | RGGWCCY | 2 cut(s) | 30, 427 |
| PvuII | CAGCTG | 1 cut(s) | 79 |
| RruI | TCGCGA | 1 cut(s) | 487 |
| RseI | CAYNNNNRTG | 2 cut(s) | 320, 512 |
| SacI | GAGCTC | 1 cut(s) | 168 |
| SaqAI | TTAA | 3 cut(s) | 68, 380, 392 |
| SatI | GCNGC | 2 cut(s) | 63, 80 |
| Sau3AI | GATC | 1 cut(s) | 91 |
| Sau96I | GGNCC | 5 cut(s) | 30, 187, 357, 427, 475 |
| ScrFI | CCNGG | 3 cut(s) | 10, 42, 512 |
| SduI | GDGCHC | 1 cut(s) | 168 |
| SfaNI | GCATC | 3 cut(s) | 265, 479, 516 |
| SinI | GGWCC | 4 cut(s) | 30, 357, 427, 475 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 320, 512 |
| SmlI | CTYRAG | 1 cut(s) | 227 |
| SmoI | CTYRAG | 1 cut(s) | 227 |
| Sse9I | AATT | 2 cut(s) | 352, 377 |
| SseBI | AGGCCT | 1 cut(s) | 464 |
| SspMI | CTAG | 2 cut(s) | 386, 399 |
| SstI | GAGCTC | 1 cut(s) | 168 |
| StuI | AGGCCT | 1 cut(s) | 464 |
| StyD4I | CCNGG | 3 cut(s) | 8, 40, 510 |
| TaaI | ACNGT | 2 cut(s) | 58, 107 |
| TaqI | TCGA | 1 cut(s) | 531 |
| TasI | AATT | 2 cut(s) | 352, 377 |
| Tru1I | TTAA | 3 cut(s) | 68, 380, 392 |
| Tru9I | TTAA | 3 cut(s) | 68, 380, 392 |
| TscAI | CASTG | 2 cut(s) | 112, 477 |
| TseFI | GTSAC | 1 cut(s) | 516 |
| TseI | GCWGC | 2 cut(s) | 62, 79 |
| Tsp45I | GTSAC | 1 cut(s) | 516 |
| TspDTI | ATGAA | 2 cut(s) | 365, 537 |
| TspRI | CASTG | 2 cut(s) | 112, 477 |
| VpaK11BI | GGWCC | 4 cut(s) | 30, 357, 427, 475 |
| XmiI | GTMKAC | 1 cut(s) | 266 |
| XspI | CTAG | 2 cut(s) | 386, 399 |