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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 172 |
| AccII | CGCG | 1 cut(s) | 436 |
| AclWI | GGATC | 3 cut(s) | 70, 244, 600 |
| AcoI | YGGCCR | 1 cut(s) | 392 |
| AcuI | CTGAAG | 2 cut(s) | 148, 322 |
| AfaI | GTAC | 2 cut(s) | 417, 627 |
| AgsI | TTSAA | 5 cut(s) | 50, 155, 224, 329, 494 |
| AjnI | CCWGG | 2 cut(s) | 157, 331 |
| AluBI | AGCT | 5 cut(s) | 3, 177, 642, 673, 765 |
| AluI | AGCT | 5 cut(s) | 3, 177, 642, 673, 765 |
| AlwI | GGATC | 3 cut(s) | 70, 244, 600 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 597, 609 |
| AoxI | GGCC | 3 cut(s) | 112, 286, 392 |
| ApeKI | GCWGC | 5 cut(s) | 15, 189, 480, 526, 758 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 17, 49, 191, 223 |
| AseI | ATTAAT | 1 cut(s) | 520 |
| AspLEI | GCGC | 4 cut(s) | 173, 436, 683, 699 |
| AspS9I | GGNCC | 3 cut(s) | 112, 286, 366 |
| AsuC2I | CCSGG | 2 cut(s) | 667, 788 |
| AsuHPI | GGTGA | 1 cut(s) | 758 |
| AvaII | GGWCC | 1 cut(s) | 366 |
| BbvCI | CCTCAGC | 1 cut(s) | 643 |
| BbvI | GCAGC | 5 cut(s) | 2, 176, 467, 538, 770 |
| BccI | CCATC | 7 cut(s) | 18, 51, 102, 192, 225, 276, 407 |
| BceAI | ACGGC | 1 cut(s) | 556 |
| BciT130I | CCWGG | 2 cut(s) | 159, 333 |
| BcnI | CCSGG | 2 cut(s) | 667, 788 |
| BfaI | CTAG | 1 cut(s) | 565 |
| BfmI | CTRYAG | 2 cut(s) | 55, 229 |
| BfoI | RGCGCY | 1 cut(s) | 700 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 120, 294 |
| BglII | AGATCT | 2 cut(s) | 95, 269 |
| BisI | GCNGC | 8 cut(s) | 16, 19, 190, 193, 458, 481, 527, 759 |
| BlsI | GCNGC | 8 cut(s) | 17, 20, 191, 194, 459, 482, 528, 760 |
| Bme1390I | CCNGG | 4 cut(s) | 159, 333, 667, 788 |
| Bme18I | GGWCC | 1 cut(s) | 366 |
| BmgT120I | GGNCC | 3 cut(s) | 112, 286, 366 |
| BmiI | GGNNCC | 3 cut(s) | 113, 287, 367 |
| BmrFI | CCNGG | 4 cut(s) | 159, 333, 667, 788 |
| BmsI | GCATC | 3 cut(s) | 90, 158, 264 |
| BpmI | CTGGAG | 1 cut(s) | 738 |
| Bpu10I | CCTNAGC | 1 cut(s) | 643 |
| BpuMI | CCSGG | 2 cut(s) | 667, 788 |
| BsaAI | YACGTR | 1 cut(s) | 419 |
| BsaJI | CCNNGG | 3 cut(s) | 380, 511, 787 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 631, 661 |
| Bse1I | ACTGG | 2 cut(s) | 623, 698 |
| BseBI | CCWGG | 2 cut(s) | 159, 333 |
| BseDI | CCNNGG | 3 cut(s) | 380, 511, 787 |
| BseGI | GGATG | 2 cut(s) | 113, 287 |
| BseMII | CTCAG | 1 cut(s) | 634 |
| BseNI | ACTGG | 2 cut(s) | 623, 698 |
| BseXI | GCAGC | 5 cut(s) | 2, 176, 467, 538, 770 |
| BsgI | GTGCAG | 1 cut(s) | 610 |
| Bsh1236I | CGCG | 1 cut(s) | 436 |
| BshFI | GGCC | 3 cut(s) | 114, 288, 394 |
| BsiSI | CCGG | 2 cut(s) | 666, 787 |
| BsmI | GAATGC | 2 cut(s) | 56, 230 |
| BsnI | GGCC | 3 cut(s) | 114, 288, 394 |
| Bsp143I | GATC | 6 cut(s) | 62, 95, 236, 269, 605, 703 |
| BspANI | GGCC | 3 cut(s) | 114, 288, 394 |
| BspCNI | CTCAG | 1 cut(s) | 635 |
| BspFNI | CGCG | 1 cut(s) | 436 |
| BspHI | TCATGA | 1 cut(s) | 656 |
| BspLI | GGNNCC | 3 cut(s) | 113, 287, 367 |
| BspPI | GGATC | 3 cut(s) | 70, 244, 600 |
| BspQI | GCTCTTC | 1 cut(s) | 467 |
| BsrI | ACTGG | 2 cut(s) | 623, 698 |
| BssECI | CCNNGG | 3 cut(s) | 380, 511, 787 |
| BssMI | GATC | 6 cut(s) | 62, 95, 236, 269, 605, 703 |
| BssT1I | CCWWGG | 2 cut(s) | 380, 511 |
| Bst2UI | CCWGG | 2 cut(s) | 159, 333 |
| Bst6I | CTCTTC | 2 cut(s) | 467, 724 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 168, 597 |
| BstBAI | YACGTR | 1 cut(s) | 419 |
| BstC8I | GCNNGC | 5 cut(s) | 175, 396, 508, 763, 784 |
| BstDEI | CTNAG | 1 cut(s) | 643 |
| BstEII | GGTNACC | 1 cut(s) | 746 |
| BstF5I | GGATG | 2 cut(s) | 113, 287 |
| BstFNI | CGCG | 1 cut(s) | 436 |
| BstH2I | RGCGCY | 1 cut(s) | 700 |
| BstHHI | GCGC | 4 cut(s) | 173, 436, 683, 699 |
| BstKTI | GATC | 6 cut(s) | 65, 98, 239, 272, 608, 706 |
| BstMBI | GATC | 6 cut(s) | 62, 95, 236, 269, 605, 703 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 120, 168, 294, 391, 597 |
| BstNI | CCWGG | 2 cut(s) | 159, 333 |
| BstNSI | RCATGY | 1 cut(s) | 786 |
| BstPI | GGTNACC | 1 cut(s) | 746 |
| BstSCI | CCNGG | 4 cut(s) | 157, 331, 665, 786 |
| BstSFI | CTRYAG | 2 cut(s) | 55, 229 |
| BstUI | CGCG | 1 cut(s) | 436 |
| BstV1I | GCAGC | 5 cut(s) | 2, 176, 467, 538, 770 |
| BstX2I | RGATCY | 3 cut(s) | 95, 269, 605 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 402 |
| BstYI | RGATCY | 3 cut(s) | 95, 269, 605 |
| BsuRI | GGCC | 3 cut(s) | 114, 288, 394 |
| BtgZI | GCGATG | 1 cut(s) | 170 |
| BtsCI | GGATG | 2 cut(s) | 113, 287 |
| Cac8I | GCNNGC | 5 cut(s) | 175, 396, 508, 763, 784 |
| CaiI | CAGNNNCTG | 2 cut(s) | 597, 609 |
| CciI | TCATGA | 1 cut(s) | 656 |
| CfoI | GCGC | 4 cut(s) | 173, 436, 683, 699 |
| Cfr13I | GGNCC | 3 cut(s) | 112, 286, 366 |
| CseI | GACGC | 3 cut(s) | 21, 195, 589 |
| Csp6I | GTAC | 2 cut(s) | 416, 626 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 112, 147, 286, 321 |
| CviAII | CATG | 2 cut(s) | 657, 783 |
| CviQI | GTAC | 2 cut(s) | 416, 626 |
| DdeI | CTNAG | 1 cut(s) | 643 |
| DpnI | GATC | 6 cut(s) | 64, 97, 238, 271, 607, 705 |
| DpnII | GATC | 6 cut(s) | 62, 95, 236, 269, 605, 703 |
| EaeI | YGGCCR | 1 cut(s) | 392 |
| Eam1104I | CTCTTC | 2 cut(s) | 467, 724 |
| EarI | CTCTTC | 2 cut(s) | 467, 724 |
| Eco130I | CCWWGG | 2 cut(s) | 380, 511 |
| Eco47I | GGWCC | 1 cut(s) | 366 |
| Eco57I | CTGAAG | 2 cut(s) | 148, 322 |
| Eco91I | GGTNACC | 1 cut(s) | 746 |
| EcoO109I | RGGNCCY | 1 cut(s) | 366 |
| EcoO65I | GGTNACC | 1 cut(s) | 746 |
| EcoRII | CCWGG | 2 cut(s) | 157, 331 |
| EcoT14I | CCWWGG | 2 cut(s) | 380, 511 |
| ErhI | CCWWGG | 2 cut(s) | 380, 511 |
| FaeI | CATG | 2 cut(s) | 660, 786 |
| FatI | CATG | 2 cut(s) | 656, 782 |
| FauI | CCCGC | 1 cut(s) | 780 |
| Fnu4HI | GCNGC | 8 cut(s) | 16, 19, 190, 193, 458, 481, 527, 759 |
| FokI | GGATG | 2 cut(s) | 120, 294 |
| Fsp4HI | GCNGC | 8 cut(s) | 16, 19, 190, 193, 458, 481, 527, 759 |
| FspBI | CTAG | 1 cut(s) | 565 |
| FspI | TGCGCA | 1 cut(s) | 172 |
| GlaI | GCGC | 4 cut(s) | 172, 435, 682, 698 |
| GluI | GCNGC | 8 cut(s) | 16, 19, 190, 193, 458, 481, 527, 759 |
| GsuI | CTGGAG | 1 cut(s) | 738 |
| HaeII | RGCGCY | 1 cut(s) | 700 |
| HaeIII | GGCC | 3 cut(s) | 114, 288, 394 |
| HapII | CCGG | 2 cut(s) | 666, 787 |
| HgaI | GACGC | 3 cut(s) | 21, 195, 589 |
| HhaI | GCGC | 4 cut(s) | 173, 436, 683, 699 |
| Hin1II | CATG | 2 cut(s) | 660, 786 |
| Hin6I | GCGC | 4 cut(s) | 171, 434, 681, 697 |
| HinP1I | GCGC | 4 cut(s) | 171, 434, 681, 697 |
| HpaII | CCGG | 2 cut(s) | 666, 787 |
| HphI | GGTGA | 1 cut(s) | 758 |
| Hpy166II | GTNNAC | 1 cut(s) | 555 |
| Hpy188I | TCNGA | 1 cut(s) | 605 |
| Hpy188III | TCNNGA | 5 cut(s) | 47, 221, 581, 657, 707 |
| Hpy8I | GTNNAC | 1 cut(s) | 555 |
| Hpy99I | CGWCG | 1 cut(s) | 639 |
| HpyCH4IV | ACGT | 1 cut(s) | 418 |
| HpyCH4V | TGCA | 5 cut(s) | 140, 314, 591, 612, 782 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 120, 168, 294, 391, 597 |
| HpyF3I | CTNAG | 1 cut(s) | 643 |
| HpySE526I | ACGT | 1 cut(s) | 418 |
| Hsp92II | CATG | 2 cut(s) | 660, 786 |
| HspAI | GCGC | 4 cut(s) | 171, 434, 681, 697 |
| Kzo9I | GATC | 6 cut(s) | 62, 95, 236, 269, 605, 703 |
| LguI | GCTCTTC | 1 cut(s) | 467 |
| LmnI | GCTCC | 1 cut(s) | 639 |
| Lsp1109I | GCAGC | 5 cut(s) | 2, 176, 467, 538, 770 |
| LweI | GCATC | 3 cut(s) | 90, 158, 264 |
| MaeI | CTAG | 1 cut(s) | 565 |
| MaeII | ACGT | 1 cut(s) | 418 |
| MaeIII | GTNAC | 1 cut(s) | 746 |
| MalI | GATC | 6 cut(s) | 64, 97, 238, 271, 607, 705 |
| MboI | GATC | 6 cut(s) | 62, 95, 236, 269, 605, 703 |
| MboII | GAAGA | 3 cut(s) | 454, 506, 741 |
| MflI | RGATCY | 3 cut(s) | 95, 269, 605 |
| MluCI | AATT | 1 cut(s) | 660 |
| MnlI | CCTC | 4 cut(s) | 577, 638, 762, 785 |
| MseI | TTAA | 2 cut(s) | 472, 520 |
| MspI | CCGG | 2 cut(s) | 666, 787 |
| MspR9I | CCNGG | 4 cut(s) | 159, 333, 667, 788 |
| Mva1269I | GAATGC | 2 cut(s) | 56, 230 |
| MvaI | CCWGG | 2 cut(s) | 159, 333 |
| MvnI | CGCG | 1 cut(s) | 436 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 120, 168, 294, 391, 597 |
| NciI | CCSGG | 2 cut(s) | 667, 788 |
| NdeII | GATC | 6 cut(s) | 62, 95, 236, 269, 605, 703 |
| NlaIII | CATG | 2 cut(s) | 660, 786 |
| NlaIV | GGNNCC | 3 cut(s) | 113, 287, 367 |
| NmeAIII | GCCGAG | 3 cut(s) | 173, 347, 370 |
| NmuCI | GTSAC | 1 cut(s) | 746 |
| NsbI | TGCGCA | 1 cut(s) | 172 |
| NspI | RCATGY | 1 cut(s) | 786 |
| PaeI | GCATGC | 1 cut(s) | 786 |
| PagI | TCATGA | 1 cut(s) | 656 |
| PciSI | GCTCTTC | 1 cut(s) | 467 |
| PctI | GAATGC | 2 cut(s) | 56, 230 |
| PkrI | GCNGC | 8 cut(s) | 17, 20, 191, 194, 459, 482, 528, 760 |
| Ppu21I | YACGTR | 1 cut(s) | 419 |
| PpuMI | RGGWCCY | 1 cut(s) | 366 |
| PshBI | ATTAAT | 1 cut(s) | 520 |
| Psp5II | RGGWCCY | 1 cut(s) | 366 |
| Psp6I | CCWGG | 2 cut(s) | 157, 331 |
| PspEI | GGTNACC | 1 cut(s) | 746 |
| PspGI | CCWGG | 2 cut(s) | 157, 331 |
| PspN4I | GGNNCC | 3 cut(s) | 113, 287, 367 |
| PspPI | GGNCC | 3 cut(s) | 112, 286, 366 |
| PspPPI | RGGWCCY | 1 cut(s) | 366 |
| PstNI | CAGNNNCTG | 2 cut(s) | 597, 609 |
| PsuI | RGATCY | 3 cut(s) | 95, 269, 605 |
| RsaI | GTAC | 2 cut(s) | 417, 627 |
| RsaNI | GTAC | 2 cut(s) | 416, 626 |
| SapI | GCTCTTC | 1 cut(s) | 467 |
| SaqAI | TTAA | 2 cut(s) | 472, 520 |
| SatI | GCNGC | 8 cut(s) | 16, 19, 190, 193, 458, 481, 527, 759 |
| Sau3AI | GATC | 6 cut(s) | 62, 95, 236, 269, 605, 703 |
| Sau96I | GGNCC | 3 cut(s) | 112, 286, 366 |
| ScrFI | CCNGG | 4 cut(s) | 159, 333, 667, 788 |
| SetI | ASST | 7 cut(s) | 179, 413, 421, 644, 649, 675, 767 |
| SfaNI | GCATC | 3 cut(s) | 90, 158, 264 |
| SfcI | CTRYAG | 2 cut(s) | 55, 229 |
| SinI | GGWCC | 1 cut(s) | 366 |
| SphI | GCATGC | 1 cut(s) | 786 |
| Sse9I | AATT | 1 cut(s) | 660 |
| SspMI | CTAG | 1 cut(s) | 565 |
| StyD4I | CCNGG | 4 cut(s) | 157, 331, 665, 786 |
| StyI | CCWWGG | 2 cut(s) | 380, 511 |
| TaiI | ACGT | 1 cut(s) | 421 |
| TaqI | TCGA | 3 cut(s) | 84, 685, 702 |
| TasI | AATT | 1 cut(s) | 660 |
| TauI | GCSGC | 3 cut(s) | 21, 195, 460 |
| Tru1I | TTAA | 2 cut(s) | 472, 520 |
| Tru9I | TTAA | 2 cut(s) | 472, 520 |
| TseFI | GTSAC | 1 cut(s) | 746 |
| TseI | GCWGC | 5 cut(s) | 15, 189, 480, 526, 758 |
| Tsp45I | GTSAC | 1 cut(s) | 746 |
| TspDTI | ATGAA | 3 cut(s) | 363, 535, 673 |
| TspGWI | ACGGA | 1 cut(s) | 652 |
| VpaK11BI | GGWCC | 1 cut(s) | 366 |
| VspI | ATTAAT | 1 cut(s) | 520 |
| XceI | RCATGY | 1 cut(s) | 786 |
| XspI | CTAG | 1 cut(s) | 565 |