Rmu_sc0002259.1_g000004

Sister chromatid cohesion protein PDS5 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002259.1
OG0000057
Physical Location & Seq
Reverse (-)
12817 .. 14488
1672 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002259.1_g000004.1.cds

Sequence Viewer

Length: 1407 bp
atggaggccatctcgagccaagccaagcatattgcatcagagttggcaactcttcgcaatgaagggtctaacctcacgacccagattgccatgcaaagaactgaattggaccaggctaaaaaggttatgaataaggctctgggagatcctactgccatccttggttcgctgggccaaccctcgggctctggcaaatacatacctctgaatgctagggaaaaggctagcagcaacaccgctacgctgtctgcaatggtcgctgcctcgtcaactaaaaacagggacaaagctctagtaatcggcgacaaagagaagtctacaccctctgtagtgcagaagagtaaaactttgaagttcggccaaggcactcctacagatcctgtcgtatttgttcaatatgacagcgatggagcagagaatgtatatcaagagcttccaggaaattactatggactcaatcaggtaggcaatctaatcaagataacggctctggtaaaggatgtgtccacactagcgctgactcttcagcaatccactattccccagatcattcatctggaggaaggaaaaacgaccactacccagaccgcacctctccatacggctagccagaccgtggtgatacctccgcctcctggcccaaattatgtgagacgcgaggagattgaagagatgatcaggttggctaaccctagggcccaccctgatggagagatgatactgagaatgtggcaactcatctggccaggttcagggtgcaatgcggccagatcagtggcagattgtccagcaatggaaaaacttttccgagaaactttcggggctatcgagcctgaggttgacttggcttctctcactcagatggcccaacagcccatcgagtctgctgttgcttatcttcaatgcttccagattcagaaggccaaactgagtatggtattgcctgagaaagaactagttaaagaaaccgacgctagaaagaatgcgcccaaagggacatatgtccccggaaaacatagtacaatggctaccttgaagtatcaaccggccacctatgatccttattatcaaggtgatgaggtttaccaggatgaagatgatgaagaggagaatgaagtctccgtatttgagctgacagggaggaagaactcaaccttgaagcagttgaaaatatctaaggaacctgttaagctcaaatctgtagctttcaccaaacctgagttcgcgacgtatacatatgaagccaataaggcacatgagattttagatgagatgatagttgtgaacatggtgaagacatatttcgaacctttcccttggccagatcagttaaaagggaaaaagtactgcaaatttcacaattacacggctgactgtgtgaagctgaaggaccagattcaagtatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

468

Amino Acids

51.86

Weight (kDa)

6.08

Isoelectric Point (pI)

34.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000057)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00341 FvH4_2g18201 FvH4_2g24491 FvH4_2g24511 FvH4_3g22961 FvH4_3g33532 FvH4_3g33534 FvH4_4g05275 FvH4_4g12372 FvH4_5g20143 FvH4_7g12392
pyrus_communis pycom12g16120
rosa_chinensis RchiOBHm_Chr5g0023531 RchiOBHm_Chr6g0271201
rosa_laevigata RLG00000030639
rosa_multiflora Rmu_co8016136.1_g000001 Rmu_co8027180.1_g000001 Rmu_co8041016.1_g000001 Rmu_co8052812.1_g000001 Rmu_co8152468.1_g000001 Rmu_co8165796.1_g000001 Rmu_co8170214.1_g000001 Rmu_co8227433.1_g000001 Rmu_co8241379.1_g000001 Rmu_co8254305.1_g000001 Rmu_co8258647.1_g000001 Rmu_co8265535.1_g000002 Rmu_co8276845.1_g000001 Rmu_co8296303.1_g000001 Rmu_co8304827.1_g000001 Rmu_co8308345.1_g000001 Rmu_co8320493.1_g000002 Rmu_co8326955.1_g000001 Rmu_co8331007.1_g000001 Rmu_co8335625.1_g000001 Rmu_co8354465.1_g000001 Rmu_co8360201.1_g000001 Rmu_co8362075.1_g000002 Rmu_co8362991.1_g000001 Rmu_co8364567.1_g000001 Rmu_co8365273.1_g000001 Rmu_co8387267.1_g000001 Rmu_co8395251.1_g000002 Rmu_co8396677.1_g000001 Rmu_co8457659.1_g000001 Rmu_co8478117.1_g000001 Rmu_co8487163.1_g000001 Rmu_co8498169.1_g000001 Rmu_sc0000029.1_g000022 Rmu_sc0000063.1_g000007 Rmu_sc0000112.1_g000020 Rmu_sc0000146.1_g000006 Rmu_sc0000245.1_g000015 Rmu_sc0000276.1_g000036 Rmu_sc0000334.1_g000033 Rmu_sc0000334.1_g000034 Rmu_sc0000434.1_g000019 Rmu_sc0000441.1_g000118 Rmu_sc0000533.1_g000054 Rmu_sc0000533.1_g000055 Rmu_sc0000595.1_g000041 Rmu_sc0000663.1_g000019 Rmu_sc0000673.1_g000002 Rmu_sc0000698.1_g000102 Rmu_sc0000745.1_g000007 Rmu_sc0000768.1_g000018 Rmu_sc0000811.1_g000012 Rmu_sc0000826.1_g000009 Rmu_sc0000826.1_g000011 Rmu_sc0001051.1_g000042 Rmu_sc0001051.1_g000043 Rmu_sc0001148.1_g000014 Rmu_sc0001198.1_g000021 Rmu_sc0001227.1_g000008 Rmu_sc0001250.1_g000028 Rmu_sc0001395.1_g000019 Rmu_sc0001395.1_g000020 Rmu_sc0001396.1_g000002 Rmu_sc0001424.1_g000007 Rmu_sc0001455.1_g000025 Rmu_sc0001455.1_g000029 Rmu_sc0001499.1_g000036 Rmu_sc0001539.1_g000001 Rmu_sc0001562.1_g000027 Rmu_sc0001563.1_g000024 Rmu_sc0001719.1_g000022 Rmu_sc0001796.1_g000008 Rmu_sc0001884.1_g000022 Rmu_sc0001903.1_g000018 Rmu_sc0002041.1_g000012 Rmu_sc0002096.1_g000002 Rmu_sc0002126.1_g000027 Rmu_sc0002181.1_g000010 Rmu_sc0002259.1_g000004 Rmu_sc0002279.1_g000018 Rmu_sc0002312.1_g000060 Rmu_sc0002383.1_g000011 Rmu_sc0002401.1_g000012 Rmu_sc0002509.1_g000028 Rmu_sc0002569.1_g000008 Rmu_sc0002587.1_g000037 Rmu_sc0002665.1_g000006 Rmu_sc0002698.1_g000018 Rmu_sc0002724.1_g000002 Rmu_sc0002727.1_g000011 Rmu_sc0002927.1_g000055 Rmu_sc0002927.1_g000056 Rmu_sc0002943.1_g000009 Rmu_sc0002943.1_g000023 Rmu_sc0002998.1_g000001 Rmu_sc0003089.1_g000036 Rmu_sc0003127.1_g000022 Rmu_sc0003127.1_g000040 Rmu_sc0003207.1_g000010 Rmu_sc0003207.1_g000011 Rmu_sc0003275.1_g000034 Rmu_sc0003275.1_g000036 Rmu_sc0003337.1_g000047 Rmu_sc0003376.1_g000004 Rmu_sc0003522.1_g000024 Rmu_sc0003613.1_g000007 Rmu_sc0003708.1_g000026 Rmu_sc0003784.1_g000018 Rmu_sc0004079.1_g000005 Rmu_sc0004092.1_g000017 Rmu_sc0004168.1_g000058 Rmu_sc0004174.1_g000019 Rmu_sc0004199.1_g000049 Rmu_sc0004230.1_g000005 Rmu_sc0004283.1_g000021 Rmu_sc0004283.1_g000022 Rmu_sc0004314.1_g000017 Rmu_sc0004538.1_g000006 Rmu_sc0004542.1_g000011 Rmu_sc0004602.1_g000024 Rmu_sc0004641.1_g000006 Rmu_sc0004862.1_g000011 Rmu_sc0004941.1_g000043 Rmu_sc0005003.1_g000003 Rmu_sc0005112.1_g000018 Rmu_sc0005144.1_g000014 Rmu_sc0005266.1_g000014 Rmu_sc0005418.1_g000004 Rmu_sc0005627.1_g000006 Rmu_sc0005652.1_g000022 Rmu_sc0005747.1_g000032 Rmu_sc0005982.1_g000013 Rmu_sc0006050.1_g000017 Rmu_sc0006059.1_g000035 Rmu_sc0006128.1_g000002 Rmu_sc0006228.1_g000009 Rmu_sc0006243.1_g000009 Rmu_sc0006300.1_g000004 Rmu_sc0006463.1_g000007 Rmu_sc0006579.1_g000016 Rmu_sc0006595.1_g000011 Rmu_sc0006624.1_g000006 Rmu_sc0006624.1_g000007 Rmu_sc0006624.1_g000008 Rmu_sc0006674.1_g000025 Rmu_sc0006792.1_g000013 Rmu_sc0006872.1_g000022 Rmu_sc0006984.1_g000009 Rmu_sc0006984.1_g000010 Rmu_sc0006986.1_g000011 Rmu_sc0007016.1_g000001 Rmu_sc0007221.1_g000006 Rmu_sc0007222.1_g000005 Rmu_sc0007222.1_g000006 Rmu_sc0007251.1_g000001 Rmu_sc0007777.1_g000037 Rmu_sc0007826.1_g000018 Rmu_sc0008053.1_g000015 Rmu_sc0008502.1_g000006 Rmu_sc0008659.1_g000009 Rmu_sc0009045.1_g000009 Rmu_sc0009045.1_g000010 Rmu_sc0009060.1_g000012 Rmu_sc0009360.1_g000024 Rmu_sc0009431.1_g000001 Rmu_sc0009606.1_g000014 Rmu_sc0009774.1_g000001 Rmu_sc0009844.1_g000014 Rmu_sc0010313.1_g000001 Rmu_sc0010454.1_g000008 Rmu_sc0010543.1_g000016 Rmu_sc0010900.1_g000002 Rmu_sc0010925.1_g000009 Rmu_sc0011136.1_g000012 Rmu_sc0011534.1_g000004 Rmu_sc0011809.1_g000007 Rmu_sc0011917.1_g000005 Rmu_sc0012103.1_g000001 Rmu_sc0012287.1_g000001 Rmu_sc0012303.1_g000007 Rmu_sc0012344.1_g000009 Rmu_sc0012674.1_g000007 Rmu_sc0012686.1_g000001 Rmu_sc0012742.1_g000005 Rmu_sc0012746.1_g000026 Rmu_sc0012746.1_g000027 Rmu_sc0013419.1_g000008 Rmu_sc0014866.1_g000004 Rmu_sc0015325.1_g000011 Rmu_sc0015486.1_g000005 Rmu_sc0015651.1_g000002 Rmu_sc0015783.1_g000001 Rmu_sc0016387.1_g000009 Rmu_sc0017518.1_g000005 Rmu_sc0018480.1_g000001 Rmu_sc0018537.1_g000003 Rmu_sc0019200.1_g000002 Rmu_sc0019544.1_g000014 Rmu_sc0019544.1_g000015 Rmu_sc0019873.1_g000001 Rmu_sc0020392.1_g000001 Rmu_sc0020466.1_g000001 Rmu_sc0022008.1_g000001 Rmu_sc0022008.1_g000002 Rmu_sc0022274.1_g000001 Rmu_sc0023644.1_g000005 Rmu_sc0024657.1_g000001 Rmu_sc0024721.1_g000003 Rmu_sc0025790.1_g000001 Rmu_sc0026866.1_g000001 Rmu_sc0027363.1_g000002 Rmu_sc0027485.1_g000001 Rmu_sc0028394.1_g000001 Rmu_sc0033121.1_g000002 Rmu_sc0033838.1_g000001 Rmu_sc0035536.1_g000001 Rmu_sc0036296.1_g000001 Rmu_sc0036297.1_g000001 Rmu_sc0036298.1_g000001 Rmu_sc0036797.1_g000001 Rmu_sc0037010.1_g000001 Rmu_sc0037444.1_g000002 Rmu_sc0039012.1_g000002 Rmu_sc0040172.1_g000001 Rmu_sc0042083.1_g000001 Rmu_ssc0000018.1_g000001 Rmu_ssc0000171.1_g000032 Rmu_ssc0000213.1_g000064 Rmu_ssc0000213.1_g000096 Rmu_ssc0000262.1_g000017 Rmu_ssc0000295.1_g000036 Rmu_ssc0000343.1_g000008 Rmu_ssc0000398.1_g000003 Rmu_ssc0000400.1_g000085 Rmu_ssc0000438.1_g000007 Rmu_ssc0000478.1_g000003
rosa_roxburghii Rroxscaffold_166G00440710 Rroxscaffold_166G00440720 Rroxscaffold_174G00435300 Rroxscaffold_174G00435310 Rroxscaffold_177G00434290 Rroxscaffold_177G00434300 Rroxscaffold_177G00434310 Rroxscaffold_178G00437310 Rroxscaffold_1G00002500 Rroxscaffold_1G00004730 Rroxscaffold_1G00008660 Rroxscaffold_1G00008670 Rroxscaffold_1G00008680 Rroxscaffold_1G00008690 Rroxscaffold_1G00010260 Rroxscaffold_1G00015670 Rroxscaffold_1G00021140 Rroxscaffold_1G00024380 Rroxscaffold_1G00032420 Rroxscaffold_1G00050600 Rroxscaffold_1G00050610 Rroxscaffold_1G00055970 Rroxscaffold_1G00066220 Rroxscaffold_2G00085370 Rroxscaffold_2G00092350 Rroxscaffold_2G00092360 Rroxscaffold_2G00093350 Rroxscaffold_2G00097090 Rroxscaffold_2G00108040 Rroxscaffold_2G00109970 Rroxscaffold_2G00111470 Rroxscaffold_2G00111480 Rroxscaffold_2G00112000 Rroxscaffold_2G00112060 Rroxscaffold_2G00129160 Rroxscaffold_2G00132340 Rroxscaffold_2G00136720 Rroxscaffold_2G00152910 Rroxscaffold_3G00223160 Rroxscaffold_3G00223170 Rroxscaffold_3G00223520 Rroxscaffold_3G00230980 Rroxscaffold_3G00245030 Rroxscaffold_3G00259050 Rroxscaffold_3G00259060 Rroxscaffold_3G00259070 Rroxscaffold_3G00267470 Rroxscaffold_3G00272040 Rroxscaffold_3G00272440 Rroxscaffold_3G00272450 Rroxscaffold_4G00285860 Rroxscaffold_4G00285870 Rroxscaffold_4G00294380 Rroxscaffold_4G00294390 Rroxscaffold_4G00297890 Rroxscaffold_4G00298150 Rroxscaffold_4G00303090 Rroxscaffold_4G00306480 Rroxscaffold_4G00306680 Rroxscaffold_4G00310490 Rroxscaffold_4G00310630 Rroxscaffold_4G00310670 Rroxscaffold_4G00310680 Rroxscaffold_4G00310690 Rroxscaffold_4G00317930 Rroxscaffold_4G00320190 Rroxscaffold_4G00323370 Rroxscaffold_4G00323380 Rroxscaffold_4G00324200 Rroxscaffold_4G00331220 Rroxscaffold_5G00339230 Rroxscaffold_5G00341260 Rroxscaffold_5G00343120 Rroxscaffold_5G00345440 Rroxscaffold_5G00345450 Rroxscaffold_5G00353190 Rroxscaffold_5G00353420 Rroxscaffold_5G00356560 Rroxscaffold_5G00359790 Rroxscaffold_5G00381710 Rroxscaffold_5G00381720 Rroxscaffold_5G00386250 Rroxscaffold_5G00387520 Rroxscaffold_6G00390180 Rroxscaffold_6G00392810 Rroxscaffold_6G00401230 Rroxscaffold_6G00402640 Rroxscaffold_6G00405640 Rroxscaffold_6G00405650 Rroxscaffold_6G00405850 Rroxscaffold_6G00405860 Rroxscaffold_6G00412020 Rroxscaffold_6G00415690 Rroxscaffold_6G00415700 Rroxscaffold_7G00168110 Rroxscaffold_7G00178950 Rroxscaffold_7G00178960 Rroxscaffold_7G00193670 Rroxscaffold_7G00203020 Rroxscaffold_7G00203340 Rroxscaffold_7G00203550 Rroxscaffold_7G00207220 Rroxscaffold_7G00207250 Rroxscaffold_7G00207430 Rroxscaffold_7G00209310 Rroxscaffold_7G00211530 Rroxscaffold_7G00211540 Rroxscaffold_7G00214160 Rroxscaffold_7G00216040 Rroxscaffold_7G00216800
rosa_samantha Rh1AG276800 Rh1CG260400 Rh3CG366700
rosa_wichuraiana Rw1G001440 Rw3G029210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 616
AccI GTMKAC 2 cut(s) 317, 1232
AccII CGCG 2 cut(s) 657, 1226
AciI CCGC 4 cut(s) 237, 588, 629, 764
AclWI GGATC 3 cut(s) 140, 371, 1052
AcoI YGGCCR 5 cut(s) 358, 743, 765, 1047, 1319
AcsI RAATTY 1 cut(s) 1352
AcuI CTGAAG 2 cut(s) 509, 1406
AfaI GTAC 2 cut(s) 1021, 1346
AfeI AGCGCT 1 cut(s) 516
AfiI CCNNNNNNNGG 4 cut(s) 181, 616, 635, 752
AgsI TTSAA 8 cut(s) 352, 395, 668, 902, 1036, 1159, 1168, 1400
AhlI ACTAGT 1 cut(s) 955
AjnI CCWGG 5 cut(s) 111, 436, 634, 745, 1086
AjuI GAANNNNNNNTTGG 2 cut(s) 1205, 1237
AluBI AGCT 6 cut(s) 290, 433, 1132, 1192, 1205, 1384
AluI AGCT 6 cut(s) 290, 433, 1132, 1192, 1205, 1384
Alw26I GTCTC 2 cut(s) 646, 1123
AlwI GGATC 3 cut(s) 140, 371, 1052
AlwNI CAGNNNCTG 1 cut(s) 380
Ama87I CYCGRG 2 cut(s) 13, 181
Aor51HI AGCGCT 1 cut(s) 516
ApaI GGGCCC 1 cut(s) 700
ApeKI GCWGC 2 cut(s) 228, 260
ApoI RAATTY 1 cut(s) 1352
AspA2I CCTAGG 1 cut(s) 692
AspLEI GCGC 2 cut(s) 517, 988
AspS9I GGNCC 7 cut(s) 109, 172, 638, 696, 697, 865, 1390
AsuC2I CCSGG 1 cut(s) 1008
AsuHPI GGTGA 4 cut(s) 631, 1085, 1201, 1303
AsuII TTCGAA 1 cut(s) 1305
AsuNHI GCTAGC 2 cut(s) 224, 605
AvaI CYCGRG 2 cut(s) 13, 181
AvaII GGWCC 2 cut(s) 109, 1390
AvrII CCTAGG 1 cut(s) 692
AxyI CCTNAGG 1 cut(s) 834
BaeGI GKGCMC 1 cut(s) 700
BalI TGGCCA 2 cut(s) 745, 1321
BanII GRGCYC 2 cut(s) 188, 700
BbsI GAAGAC 1 cut(s) 1301
BbvI GCAGC 2 cut(s) 240, 247
BccI CCATC 6 cut(s) 17, 164, 401, 701, 856, 884
BceAI ACGGC 3 cut(s) 501, 618, 1383
BciT130I CCWGG 5 cut(s) 113, 438, 636, 747, 1088
BclI TGATCA 1 cut(s) 675
BcnI CCSGG 1 cut(s) 1008
BcoDI GTCTC 2 cut(s) 646, 1123
BcuI ACTAGT 1 cut(s) 955
BfaI CTAG 8 cut(s) 213, 225, 293, 512, 606, 693, 956, 975
BfmI CTRYAG 3 cut(s) 327, 372, 1200
BfoI RGCGCY 1 cut(s) 518
BglI GCCNNNNNGGC 1 cut(s) 1250
BisI GCNGC 3 cut(s) 229, 261, 765
BlnI CCTAGG 1 cut(s) 692
BlsI GCNGC 3 cut(s) 230, 262, 766
BmcAI AGTACT 1 cut(s) 1346
Bme1390I CCNGG 6 cut(s) 113, 438, 636, 747, 1008, 1088
Bme18I GGWCC 2 cut(s) 109, 1390
BmeT110I CYCGRG 2 cut(s) 13, 181
BmgT120I GGNCC 7 cut(s) 109, 172, 638, 696, 697, 865, 1390
BmiI GGNNCC 2 cut(s) 698, 1182
BmrFI CCNGG 6 cut(s) 113, 438, 636, 747, 1008, 1088
BmsI GCATC 1 cut(s) 44
BmtI GCTAGC 2 cut(s) 228, 609
BoxI GACNNNNGTC 1 cut(s) 1001
BpiI GAAGAC 1 cut(s) 1301
BplI GAGNNNNNCTC 1 cut(s) 28
BpmI CTGGAG 1 cut(s) 578
Bpu14I TTCGAA 1 cut(s) 1305
BpuMI CCSGG 1 cut(s) 1008
BsaJI CCNNGG 7 cut(s) 160, 180, 361, 615, 692, 1006, 1316
Bsc4I CCNNNNNNNGG 4 cut(s) 181, 616, 635, 752
Bse118I RCCGGY 1 cut(s) 1045
Bse21I CCTNAGG 1 cut(s) 834
Bse3DI GCAATG 4 cut(s) 64, 258, 766, 798
BseBI CCWGG 5 cut(s) 113, 438, 636, 747, 1088
BseDI CCNNGG 7 cut(s) 160, 180, 361, 615, 692, 1006, 1316
BseGI GGATG 3 cut(s) 156, 505, 1096
BseLI CCNNNNNNNGG 4 cut(s) 181, 616, 635, 752
BseMI GCAATG 4 cut(s) 64, 258, 766, 798
BseMII CTCAG 6 cut(s) 713, 825, 872, 920, 936, 1209
BseRI GAGGAG 2 cut(s) 674, 1121
BseSI GKGCMC 1 cut(s) 700
BseXI GCAGC 2 cut(s) 240, 247
BseYI CCCAGC 1 cut(s) 169
BsgI GTGCAG 1 cut(s) 353
Bsh1236I CGCG 2 cut(s) 657, 1226
BsiHKCI CYCGRG 2 cut(s) 13, 181
BsiSI CCGG 2 cut(s) 1008, 1046
BslFI GGGAC 3 cut(s) 296, 989, 1009
BslI CCNNNNNNNGG 4 cut(s) 181, 616, 635, 752
BsmAI GTCTC 2 cut(s) 646, 1123
BsmBI CGTCTC 1 cut(s) 646
BsmFI GGGAC 3 cut(s) 296, 989, 1009
BsmI GAATGC 2 cut(s) 214, 988
BsoBI CYCGRG 2 cut(s) 13, 181
Bsp119I TTCGAA 1 cut(s) 1305
Bsp120I GGGCCC 1 cut(s) 696
Bsp1286I GDGCHC 2 cut(s) 188, 700
Bsp143I GATC 7 cut(s) 145, 376, 546, 675, 770, 1057, 1324
Bsp68I TCGCGA 1 cut(s) 1226
BspACI CCGC 4 cut(s) 237, 588, 629, 764
BspCNI CTCAG 6 cut(s) 714, 826, 871, 921, 937, 1210
BspFNI CGCG 2 cut(s) 657, 1226
BspLI GGNNCC 2 cut(s) 698, 1182
BspOI GCTAGC 2 cut(s) 228, 609
BspPI GGATC 3 cut(s) 140, 371, 1052
BspT104I TTCGAA 1 cut(s) 1305
BsrDI GCAATG 4 cut(s) 64, 258, 766, 798
BsrFI RCCGGY 1 cut(s) 1045
BssAI RCCGGY 1 cut(s) 1045
BssECI CCNNGG 7 cut(s) 160, 180, 361, 615, 692, 1006, 1316
BssMI GATC 7 cut(s) 145, 376, 546, 675, 770, 1057, 1324
BssNAI GTATAC 1 cut(s) 1233
BssT1I CCWWGG 4 cut(s) 160, 361, 692, 1316
Bst1107I GTATAC 1 cut(s) 1233
Bst2UI CCWGG 5 cut(s) 113, 438, 636, 747, 1088
Bst4CI ACNGT 2 cut(s) 616, 1376
Bst6I CTCTTC 5 cut(s) 57, 332, 528, 663, 1098
BstBI TTCGAA 1 cut(s) 1305
BstC8I GCNNGC 2 cut(s) 226, 607
BstDEI CTNAG 7 cut(s) 722, 834, 858, 929, 945, 1176, 1218
BstDSI CCRYGG 1 cut(s) 615
BstF5I GGATG 3 cut(s) 156, 505, 1096
BstFNI CGCG 2 cut(s) 657, 1226
BstH2I RGCGCY 1 cut(s) 518
BstHHI GCGC 2 cut(s) 517, 988
BstKTI GATC 7 cut(s) 148, 379, 549, 678, 773, 1060, 1327
BstMAI GTCTC 2 cut(s) 646, 1123
BstMBI GATC 7 cut(s) 145, 376, 546, 675, 770, 1057, 1324
BstMWI GCNNNNNNNGC 2 cut(s) 257, 1250
BstNI CCWGG 5 cut(s) 113, 438, 636, 747, 1088
BstPAI GACNNNNGTC 1 cut(s) 1001
BstSCI CCNGG 6 cut(s) 111, 436, 634, 745, 1006, 1086
BstSFI CTRYAG 3 cut(s) 327, 372, 1200
BstSLI GKGCMC 1 cut(s) 700
BstUI CGCG 2 cut(s) 657, 1226
BstV1I GCAGC 2 cut(s) 240, 247
BstV2I GAAGAC 1 cut(s) 1301
BstX2I RGATCY 2 cut(s) 145, 376
BstXI CCANNNNNNTGG 2 cut(s) 707, 775
BstYI RGATCY 2 cut(s) 145, 376
BstZ17I GTATAC 1 cut(s) 1233
Bsu36I CCTNAGG 1 cut(s) 834
BtgI CCRYGG 1 cut(s) 615
BtgZI GCGATG 1 cut(s) 420
BtsCI GGATG 3 cut(s) 156, 505, 1096
BtsIMutI CAGTG 1 cut(s) 780
BtuMI TCGCGA 1 cut(s) 1226
Cac8I GCNNGC 2 cut(s) 226, 607
CaiI CAGNNNCTG 1 cut(s) 380
CfoI GCGC 2 cut(s) 517, 988
Cfr10I RCCGGY 1 cut(s) 1045
Cfr13I GGNCC 7 cut(s) 109, 172, 638, 696, 697, 865, 1390
CseI GACGC 2 cut(s) 663, 980
Csp6I GTAC 2 cut(s) 1020, 1345
CviAII CATG 3 cut(s) 91, 1256, 1288
CviQI GTAC 2 cut(s) 1020, 1345
DdeI CTNAG 7 cut(s) 722, 834, 858, 929, 945, 1176, 1218
DpnI GATC 7 cut(s) 147, 378, 548, 677, 772, 1059, 1326
DpnII GATC 7 cut(s) 145, 376, 546, 675, 770, 1057, 1324
EaeI YGGCCR 5 cut(s) 358, 743, 765, 1047, 1319
Eam1104I CTCTTC 5 cut(s) 57, 332, 528, 663, 1098
EarI CTCTTC 5 cut(s) 57, 332, 528, 663, 1098
EciI GGCGGA 1 cut(s) 618
Eco130I CCWWGG 4 cut(s) 160, 361, 692, 1316
Eco24I GRGCYC 2 cut(s) 188, 700
Eco47I GGWCC 2 cut(s) 109, 1390
Eco47III AGCGCT 1 cut(s) 516
Eco57I CTGAAG 2 cut(s) 509, 1406
Eco81I CCTNAGG 1 cut(s) 834
Eco88I CYCGRG 2 cut(s) 13, 181
EcoO109I RGGNCCY 1 cut(s) 696
EcoRII CCWGG 5 cut(s) 111, 436, 634, 745, 1086
EcoT14I CCWWGG 4 cut(s) 160, 361, 692, 1316
EcoT38I GRGCYC 2 cut(s) 188, 700
ErhI CCWWGG 4 cut(s) 160, 361, 692, 1316
Esp3I CGTCTC 1 cut(s) 646
FaeI CATG 3 cut(s) 94, 1259, 1291
FaqI GGGAC 3 cut(s) 296, 989, 1009
FatI CATG 3 cut(s) 90, 1255, 1287
FauNDI CATATG 2 cut(s) 1000, 1237
FbaI TGATCA 1 cut(s) 675
FblI GTMKAC 2 cut(s) 317, 1232
Fnu4HI GCNGC 3 cut(s) 229, 261, 765
FokI GGATG 3 cut(s) 143, 512, 1103
FriOI GRGCYC 2 cut(s) 188, 700
Fsp4HI GCNGC 3 cut(s) 229, 261, 765
FspBI CTAG 8 cut(s) 213, 225, 293, 512, 606, 693, 956, 975
GlaI GCGC 2 cut(s) 516, 987
GluI GCNGC 3 cut(s) 229, 261, 765
GsaI CCCAGC 1 cut(s) 173
GsuI CTGGAG 1 cut(s) 578
HaeII RGCGCY 1 cut(s) 518
HapII CCGG 2 cut(s) 1008, 1046
HgaI GACGC 2 cut(s) 663, 980
HhaI GCGC 2 cut(s) 517, 988
Hin1II CATG 3 cut(s) 94, 1259, 1291
Hin6I GCGC 2 cut(s) 515, 986
HinP1I GCGC 2 cut(s) 515, 986
HincII GTYRAC 2 cut(s) 270, 841
HindII GTYRAC 2 cut(s) 270, 841
HinfI GANTC 5 cut(s) 453, 520, 881, 913, 1396
HpaII CCGG 2 cut(s) 1008, 1046
HphI GGTGA 4 cut(s) 631, 1085, 1201, 1303
Hpy166II GTNNAC 7 cut(s) 270, 318, 507, 841, 1084, 1233, 1285
Hpy188I TCNGA 5 cut(s) 40, 207, 809, 861, 918
Hpy188III TCNNGA 7 cut(s) 13, 76, 428, 478, 557, 910, 1225
Hpy8I GTNNAC 7 cut(s) 270, 318, 507, 841, 1084, 1233, 1285
Hpy99I CGWCG 2 cut(s) 974, 1231
HpyAV CCTTC 4 cut(s) 56, 557, 913, 1381
HpyCH4III ACNGT 2 cut(s) 616, 1376
HpyCH4IV ACGT 1 cut(s) 1229
HpyCH4V TGCA 6 cut(s) 35, 94, 251, 334, 759, 1350
HpyF10VI GCNNNNNNNGC 2 cut(s) 257, 1250
HpyF3I CTNAG 7 cut(s) 722, 834, 858, 929, 945, 1176, 1218
HpySE526I ACGT 1 cut(s) 1229
Hsp92II CATG 3 cut(s) 94, 1259, 1291
HspAI GCGC 2 cut(s) 515, 986
Ksp22I TGATCA 1 cut(s) 675
Kzo9I GATC 7 cut(s) 145, 376, 546, 675, 770, 1057, 1324
LmnI GCTCC 1 cut(s) 410
Lsp1109I GCAGC 2 cut(s) 240, 247
LweI GCATC 1 cut(s) 44
MaeI CTAG 8 cut(s) 213, 225, 293, 512, 606, 693, 956, 975
MaeII ACGT 1 cut(s) 1229
MalI GATC 7 cut(s) 147, 378, 548, 677, 772, 1059, 1326
MboI GATC 7 cut(s) 145, 376, 546, 675, 770, 1057, 1324
MboII GAAGA 9 cut(s) 44, 349, 515, 680, 890, 1106, 1115, 1156, 1306
MflI RGATCY 2 cut(s) 145, 376
MhlI GDGCHC 2 cut(s) 188, 700
MlsI TGGCCA 2 cut(s) 745, 1321
MluCI AATT 5 cut(s) 104, 442, 643, 1352, 1360
MluNI TGGCCA 2 cut(s) 745, 1321
MlyI GAGTC 3 cut(s) 447, 514, 890
Mox20I TGGCCA 2 cut(s) 745, 1321
MscI TGGCCA 2 cut(s) 745, 1321
MseI TTAA 3 cut(s) 960, 1188, 1331
MslI CAYNNNNRTG 2 cut(s) 705, 860
Msp20I TGGCCA 2 cut(s) 745, 1321
MspI CCGG 2 cut(s) 1008, 1046
MspR9I CCNGG 6 cut(s) 113, 438, 636, 747, 1008, 1088
Mva1269I GAATGC 2 cut(s) 214, 988
MvaI CCWGG 5 cut(s) 113, 438, 636, 747, 1088
MvnI CGCG 2 cut(s) 657, 1226
MwoI GCNNNNNNNGC 2 cut(s) 257, 1250
NciI CCSGG 1 cut(s) 1008
NdeI CATATG 2 cut(s) 1000, 1237
NdeII GATC 7 cut(s) 145, 376, 546, 675, 770, 1057, 1324
NheI GCTAGC 2 cut(s) 224, 605
NlaIII CATG 3 cut(s) 94, 1259, 1291
NlaIV GGNNCC 2 cut(s) 698, 1182
NruI TCGCGA 1 cut(s) 1226
NspV TTCGAA 1 cut(s) 1305
PaeR7I CTCGAG 1 cut(s) 13
PcsI WCGNNNNNNNCGW 1 cut(s) 825
PctI GAATGC 2 cut(s) 214, 988
PfeI GAWTC 2 cut(s) 913, 1396
PflMI CCANNNNNTGG 1 cut(s) 616
PfoI TCCNGGA 1 cut(s) 436
PkrI GCNGC 3 cut(s) 230, 262, 766
PleI GAGTC 3 cut(s) 447, 514, 889
PpsI GAGTC 3 cut(s) 447, 514, 889
PshAI GACNNNNGTC 1 cut(s) 1001
Psp6I CCWGG 5 cut(s) 111, 436, 634, 745, 1086
PspFI CCCAGC 1 cut(s) 169
PspGI CCWGG 5 cut(s) 111, 436, 634, 745, 1086
PspN4I GGNNCC 2 cut(s) 698, 1182
PspOMI GGGCCC 1 cut(s) 696
PspPI GGNCC 7 cut(s) 109, 172, 638, 696, 697, 865, 1390
PstNI CAGNNNCTG 1 cut(s) 380
PsuI RGATCY 2 cut(s) 145, 376
RruI TCGCGA 1 cut(s) 1226
RsaI GTAC 2 cut(s) 1021, 1346
RsaNI GTAC 2 cut(s) 1020, 1345
RseI CAYNNNNRTG 2 cut(s) 705, 860
SaqAI TTAA 3 cut(s) 960, 1188, 1331
SatI GCNGC 3 cut(s) 229, 261, 765
Sau3AI GATC 7 cut(s) 145, 376, 546, 675, 770, 1057, 1324
Sau96I GGNCC 7 cut(s) 109, 172, 638, 696, 697, 865, 1390
ScaI AGTACT 1 cut(s) 1346
SchI GAGTC 3 cut(s) 447, 514, 890
ScrFI CCNGG 6 cut(s) 113, 438, 636, 747, 1008, 1088
SduI GDGCHC 2 cut(s) 188, 700
SfaNI GCATC 1 cut(s) 44
SfcI CTRYAG 3 cut(s) 327, 372, 1200
Sfr274I CTCGAG 1 cut(s) 13
SfuI TTCGAA 1 cut(s) 1305
SinI GGWCC 2 cut(s) 109, 1390
SlaI CTCGAG 1 cut(s) 13
SmiMI CAYNNNNRTG 2 cut(s) 705, 860
SmlI CTYRAG 1 cut(s) 13
SmoI CTYRAG 1 cut(s) 13
SpeI ACTAGT 1 cut(s) 955
Sse9I AATT 5 cut(s) 104, 442, 643, 1352, 1360
SsiI CCGC 4 cut(s) 237, 588, 629, 764
SspMI CTAG 8 cut(s) 213, 225, 293, 512, 606, 693, 956, 975
StyD4I CCNGG 6 cut(s) 111, 436, 634, 745, 1006, 1086
StyI CCWWGG 4 cut(s) 160, 361, 692, 1316
TaaI ACNGT 2 cut(s) 616, 1376
TaiI ACGT 1 cut(s) 1232
TaqI TCGA 4 cut(s) 14, 828, 879, 1305
TasI AATT 5 cut(s) 104, 442, 643, 1352, 1360
TatI WGTACW 2 cut(s) 1019, 1344
TauI GCSGC 1 cut(s) 767
TfiI GAWTC 2 cut(s) 913, 1396
Tru1I TTAA 3 cut(s) 960, 1188, 1331
Tru9I TTAA 3 cut(s) 960, 1188, 1331
TscAI CASTG 1 cut(s) 780
TseI GCWGC 2 cut(s) 228, 260
TspDTI ATGAA 7 cut(s) 75, 143, 542, 1107, 1116, 1128, 1254
TspGWI ACGGA 1 cut(s) 1111
TspRI CASTG 1 cut(s) 780
Van91I CCANNNNNTGG 1 cut(s) 616
VpaK11BI GGWCC 2 cut(s) 109, 1390
XapI RAATTY 1 cut(s) 1352
XcmI CCANNNNNNNNNTGG 1 cut(s) 931
XhoI CTCGAG 1 cut(s) 13
XmaJI CCTAGG 1 cut(s) 692
XmiI GTMKAC 2 cut(s) 317, 1232
XspI CTAG 8 cut(s) 213, 225, 293, 512, 606, 693, 956, 975
ZrmI AGTACT 1 cut(s) 1346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.