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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 562 |
| AccBSI | CCGCTC | 1 cut(s) | 736 |
| AccI | GTMKAC | 2 cut(s) | 336, 808 |
| AccII | CGCG | 2 cut(s) | 312, 671 |
| AciI | CCGC | 8 cut(s) | 91, 154, 228, 310, 618, 621, 669, 736 |
| AcsI | RAATTY | 1 cut(s) | 757 |
| AcuI | CTGAAG | 2 cut(s) | 534, 621 |
| AfaI | GTAC | 2 cut(s) | 8, 190 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 316, 799, 840 |
| AgsI | TTSAA | 3 cut(s) | 58, 752, 887 |
| AjnI | CCWGG | 1 cut(s) | 660 |
| AluBI | AGCT | 2 cut(s) | 215, 273 |
| AluI | AGCT | 2 cut(s) | 215, 273 |
| Alw21I | GWGCWC | 3 cut(s) | 37, 328, 829 |
| Alw26I | GTCTC | 1 cut(s) | 208 |
| Ama87I | CYCGRG | 1 cut(s) | 208 |
| ApoI | RAATTY | 1 cut(s) | 757 |
| AspLEI | GCGC | 2 cut(s) | 422, 677 |
| AspS9I | GGNCC | 2 cut(s) | 196, 802 |
| AsuHPI | GGTGA | 2 cut(s) | 649, 874 |
| AsuNHI | GCTAGC | 1 cut(s) | 638 |
| AvaI | CYCGRG | 1 cut(s) | 208 |
| AvaII | GGWCC | 2 cut(s) | 196, 802 |
| BauI | CACGAG | 2 cut(s) | 292, 857 |
| Bbv12I | GWGCWC | 3 cut(s) | 37, 328, 829 |
| BccI | CCATC | 2 cut(s) | 559, 775 |
| BceAI | ACGGC | 1 cut(s) | 827 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 14, 48, 305, 339, 816, 850 |
| BciT130I | CCWGG | 1 cut(s) | 662 |
| BcoDI | GTCTC | 1 cut(s) | 208 |
| BfaI | CTAG | 3 cut(s) | 200, 398, 639 |
| BisI | GCNGC | 4 cut(s) | 228, 621, 669, 737 |
| BlpI | GCTNAGC | 1 cut(s) | 274 |
| BlsI | GCNGC | 4 cut(s) | 229, 622, 670, 738 |
| Bme1390I | CCNGG | 1 cut(s) | 662 |
| Bme18I | GGWCC | 2 cut(s) | 196, 802 |
| BmeT110I | CYCGRG | 1 cut(s) | 208 |
| BmgT120I | GGNCC | 2 cut(s) | 196, 802 |
| BmrFI | CCNGG | 1 cut(s) | 662 |
| BmtI | GCTAGC | 1 cut(s) | 642 |
| BoxI | GACNNNNGTC | 1 cut(s) | 353 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 523, 555 |
| BpmI | CTGGAG | 1 cut(s) | 454 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 274 |
| Bsa29I | ATCGAT | 1 cut(s) | 898 |
| BsaJI | CCNNGG | 2 cut(s) | 207, 660 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 316, 799, 840 |
| Bse1I | ACTGG | 1 cut(s) | 471 |
| BseBI | CCWGG | 1 cut(s) | 662 |
| BseCI | ATCGAT | 1 cut(s) | 898 |
| BseDI | CCNNGG | 2 cut(s) | 207, 660 |
| BseGI | GGATG | 2 cut(s) | 121, 589 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 316, 799, 840 |
| BseMII | CTCAG | 2 cut(s) | 288, 867 |
| BseNI | ACTGG | 1 cut(s) | 471 |
| BseRI | GAGGAG | 4 cut(s) | 29, 196, 320, 591 |
| BseYI | CCCAGC | 1 cut(s) | 624 |
| BsgI | GTGCAG | 2 cut(s) | 367, 467 |
| Bsh1236I | CGCG | 2 cut(s) | 312, 671 |
| Bsh1285I | CGRYCG | 2 cut(s) | 91, 154 |
| BshVI | ATCGAT | 1 cut(s) | 898 |
| BsiEI | CGRYCG | 2 cut(s) | 91, 154 |
| BsiHKAI | GWGCWC | 3 cut(s) | 37, 328, 829 |
| BsiHKCI | CYCGRG | 1 cut(s) | 208 |
| BslFI | GGGAC | 3 cut(s) | 89, 152, 380 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 316, 799, 840 |
| BsmAI | GTCTC | 1 cut(s) | 208 |
| BsmFI | GGGAC | 3 cut(s) | 89, 152, 380 |
| BsoBI | CYCGRG | 1 cut(s) | 208 |
| Bsp1286I | GDGCHC | 3 cut(s) | 37, 328, 829 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 274 |
| BspACI | CCGC | 8 cut(s) | 91, 154, 228, 310, 618, 621, 669, 736 |
| BspCNI | CTCAG | 2 cut(s) | 287, 868 |
| BspDI | ATCGAT | 1 cut(s) | 898 |
| BspFNI | CGCG | 2 cut(s) | 312, 671 |
| BspOI | GCTAGC | 1 cut(s) | 642 |
| BspQI | GCTCTTC | 1 cut(s) | 726 |
| BsrBI | CCGCTC | 1 cut(s) | 736 |
| BsrI | ACTGG | 1 cut(s) | 471 |
| BssECI | CCNNGG | 2 cut(s) | 207, 660 |
| BssSI | CACGAG | 2 cut(s) | 292, 857 |
| Bst2BI | CACGAG | 2 cut(s) | 292, 857 |
| Bst2UI | CCWGG | 1 cut(s) | 662 |
| Bst4CI | ACNGT | 3 cut(s) | 221, 247, 806 |
| Bst6I | CTCTTC | 1 cut(s) | 726 |
| BstC8I | GCNNGC | 3 cut(s) | 492, 640, 673 |
| BstDEI | CTNAG | 2 cut(s) | 274, 876 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 797 |
| BstF5I | GGATG | 2 cut(s) | 121, 589 |
| BstFNI | CGCG | 2 cut(s) | 312, 671 |
| BstHHI | GCGC | 2 cut(s) | 422, 677 |
| BstMAI | GTCTC | 1 cut(s) | 208 |
| BstMCI | CGRYCG | 2 cut(s) | 91, 154 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 674 |
| BstNI | CCWGG | 1 cut(s) | 662 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 353 |
| BstSCI | CCNGG | 1 cut(s) | 660 |
| BstUI | CGCG | 2 cut(s) | 312, 671 |
| Bsu15I | ATCGAT | 1 cut(s) | 898 |
| BsuTUI | ATCGAT | 1 cut(s) | 898 |
| BtsCI | GGATG | 2 cut(s) | 121, 589 |
| BtsIMutI | CAGTG | 1 cut(s) | 117 |
| Cac8I | GCNNGC | 3 cut(s) | 492, 640, 673 |
| CfoI | GCGC | 2 cut(s) | 422, 677 |
| Cfr13I | GGNCC | 2 cut(s) | 196, 802 |
| ClaI | ATCGAT | 1 cut(s) | 898 |
| Csp6I | GTAC | 2 cut(s) | 7, 189 |
| CviAII | CATG | 1 cut(s) | 773 |
| CviQI | GTAC | 2 cut(s) | 7, 189 |
| DdeI | CTNAG | 2 cut(s) | 274, 876 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 562 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 562 |
| Eam1104I | CTCTTC | 1 cut(s) | 726 |
| EarI | CTCTTC | 1 cut(s) | 726 |
| Eco47I | GGWCC | 2 cut(s) | 196, 802 |
| Eco57I | CTGAAG | 2 cut(s) | 534, 621 |
| Eco88I | CYCGRG | 1 cut(s) | 208 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 797 |
| EcoRI | GAATTC | 1 cut(s) | 757 |
| EcoRII | CCWGG | 1 cut(s) | 660 |
| FaeI | CATG | 1 cut(s) | 776 |
| FaiI | YATR | 4 cut(s) | 462, 728, 769, 774 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 723, 755 |
| FaqI | GGGAC | 3 cut(s) | 89, 152, 380 |
| FatI | CATG | 1 cut(s) | 772 |
| FauI | CCCGC | 2 cut(s) | 317, 625 |
| FblI | GTMKAC | 2 cut(s) | 336, 808 |
| Fnu4HI | GCNGC | 4 cut(s) | 228, 621, 669, 737 |
| FokI | GGATG | 2 cut(s) | 128, 576 |
| Fsp4HI | GCNGC | 4 cut(s) | 228, 621, 669, 737 |
| FspBI | CTAG | 3 cut(s) | 200, 398, 639 |
| GlaI | GCGC | 2 cut(s) | 421, 676 |
| GluI | GCNGC | 4 cut(s) | 228, 621, 669, 737 |
| GsaI | CCCAGC | 1 cut(s) | 628 |
| GsuI | CTGGAG | 1 cut(s) | 454 |
| HhaI | GCGC | 2 cut(s) | 422, 677 |
| Hin1II | CATG | 1 cut(s) | 776 |
| Hin6I | GCGC | 2 cut(s) | 420, 675 |
| HinP1I | GCGC | 2 cut(s) | 420, 675 |
| HincII | GTYRAC | 3 cut(s) | 448, 567, 809 |
| HindII | GTYRAC | 3 cut(s) | 448, 567, 809 |
| HinfI | GANTC | 4 cut(s) | 14, 305, 845, 880 |
| HpaI | GTTAAC | 1 cut(s) | 448 |
| HphI | GGTGA | 2 cut(s) | 649, 874 |
| Hpy166II | GTNNAC | 6 cut(s) | 46, 337, 442, 448, 567, 809 |
| Hpy188I | TCNGA | 1 cut(s) | 514 |
| Hpy188III | TCNNGA | 6 cut(s) | 20, 55, 210, 398, 529, 713 |
| Hpy8I | GTNNAC | 6 cut(s) | 46, 337, 442, 448, 567, 809 |
| Hpy99I | CGWCG | 9 cut(s) | 26, 89, 152, 317, 380, 393, 810, 813, 841 |
| HpyAV | CCTTC | 2 cut(s) | 596, 758 |
| HpyCH4III | ACNGT | 3 cut(s) | 221, 247, 806 |
| HpyCH4IV | ACGT | 3 cut(s) | 164, 187, 444 |
| HpyCH4V | TGCA | 4 cut(s) | 384, 484, 494, 797 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 674 |
| HpyF3I | CTNAG | 2 cut(s) | 274, 876 |
| HpySE526I | ACGT | 3 cut(s) | 164, 187, 444 |
| Hsp92II | CATG | 1 cut(s) | 776 |
| HspAI | GCGC | 2 cut(s) | 420, 675 |
| KspAI | GTTAAC | 1 cut(s) | 448 |
| LguI | GCTCTTC | 1 cut(s) | 726 |
| LmnI | GCTCC | 1 cut(s) | 212 |
| MaeI | CTAG | 3 cut(s) | 200, 398, 639 |
| MaeII | ACGT | 3 cut(s) | 164, 187, 444 |
| MaeIII | GTNAC | 3 cut(s) | 247, 473, 679 |
| MbiI | CCGCTC | 1 cut(s) | 736 |
| MboII | GAAGA | 5 cut(s) | 527, 530, 743, 790, 875 |
| MhlI | GDGCHC | 3 cut(s) | 37, 328, 829 |
| MluCI | AATT | 1 cut(s) | 757 |
| MseI | TTAA | 2 cut(s) | 447, 741 |
| MspR9I | CCNGG | 1 cut(s) | 662 |
| MvaI | CCWGG | 1 cut(s) | 662 |
| MvnI | CGCG | 2 cut(s) | 312, 671 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 674 |
| NheI | GCTAGC | 1 cut(s) | 638 |
| NlaIII | CATG | 1 cut(s) | 776 |
| PciSI | GCTCTTC | 1 cut(s) | 726 |
| PfeI | GAWTC | 4 cut(s) | 14, 305, 845, 880 |
| PkrI | GCNGC | 4 cut(s) | 229, 622, 670, 738 |
| PshAI | GACNNNNGTC | 1 cut(s) | 353 |
| Psp6I | CCWGG | 1 cut(s) | 660 |
| PspFI | CCCAGC | 1 cut(s) | 624 |
| PspGI | CCWGG | 1 cut(s) | 660 |
| PspPI | GGNCC | 2 cut(s) | 196, 802 |
| RsaI | GTAC | 2 cut(s) | 8, 190 |
| RsaNI | GTAC | 2 cut(s) | 7, 189 |
| SalI | GTCGAC | 1 cut(s) | 807 |
| SapI | GCTCTTC | 1 cut(s) | 726 |
| SaqAI | TTAA | 2 cut(s) | 447, 741 |
| SatI | GCNGC | 4 cut(s) | 228, 621, 669, 737 |
| Sau96I | GGNCC | 2 cut(s) | 196, 802 |
| ScrFI | CCNGG | 1 cut(s) | 662 |
| SduI | GDGCHC | 3 cut(s) | 37, 328, 829 |
| SgrDI | CGTCGACG | 1 cut(s) | 807 |
| SinI | GGWCC | 2 cut(s) | 196, 802 |
| Sse9I | AATT | 1 cut(s) | 757 |
| SsiI | CCGC | 8 cut(s) | 91, 154, 228, 310, 618, 621, 669, 736 |
| SspMI | CTAG | 3 cut(s) | 200, 398, 639 |
| StyD4I | CCNGG | 1 cut(s) | 660 |
| TaaI | ACNGT | 3 cut(s) | 221, 247, 806 |
| TaiI | ACGT | 3 cut(s) | 167, 190, 447 |
| TaqI | TCGA | 3 cut(s) | 554, 808, 898 |
| TaqII | GACCGA | 1 cut(s) | 184 |
| TasI | AATT | 1 cut(s) | 757 |
| TauI | GCSGC | 4 cut(s) | 230, 623, 671, 739 |
| TfiI | GAWTC | 4 cut(s) | 14, 305, 845, 880 |
| Tru1I | TTAA | 2 cut(s) | 447, 741 |
| Tru9I | TTAA | 2 cut(s) | 447, 741 |
| TscAI | CASTG | 1 cut(s) | 117 |
| TspDTI | ATGAA | 1 cut(s) | 756 |
| TspRI | CASTG | 1 cut(s) | 117 |
| VpaK11BI | GGWCC | 2 cut(s) | 196, 802 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 797 |
| XapI | RAATTY | 1 cut(s) | 757 |
| XbaI | TCTAGA | 1 cut(s) | 397 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 837 |
| XmiI | GTMKAC | 2 cut(s) | 336, 808 |
| XspI | CTAG | 3 cut(s) | 200, 398, 639 |