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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 749 |
| AccII | CGCG | 4 cut(s) | 318, 497, 563, 585 |
| AciI | CCGC | 8 cut(s) | 316, 408, 540, 561, 899, 914, 948, 960 |
| AclI | AACGTT | 1 cut(s) | 251 |
| AclWI | GGATC | 2 cut(s) | 851, 864 |
| AcoI | YGGCCR | 2 cut(s) | 798, 883 |
| AfaI | GTAC | 3 cut(s) | 143, 908, 912 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 489 |
| AgsI | TTSAA | 5 cut(s) | 257, 518, 551, 820, 841 |
| AjnI | CCWGG | 2 cut(s) | 4, 822 |
| AluBI | AGCT | 4 cut(s) | 228, 577, 848, 1001 |
| AluI | AGCT | 4 cut(s) | 228, 577, 848, 1001 |
| Alw21I | GWGCWC | 1 cut(s) | 237 |
| Alw26I | GTCTC | 2 cut(s) | 418, 804 |
| AlwI | GGATC | 2 cut(s) | 851, 864 |
| AoxI | GGCC | 2 cut(s) | 798, 883 |
| ApeKI | GCWGC | 3 cut(s) | 52, 939, 971 |
| AspLEI | GCGC | 3 cut(s) | 320, 600, 779 |
| AsuC2I | CCSGG | 1 cut(s) | 90 |
| AsuHPI | GGTGA | 1 cut(s) | 104 |
| BalI | TGGCCA | 2 cut(s) | 800, 885 |
| BamHI | GGATCC | 1 cut(s) | 856 |
| BanII | GRGCYC | 1 cut(s) | 664 |
| BbsI | GAAGAC | 1 cut(s) | 755 |
| Bbv12I | GWGCWC | 1 cut(s) | 237 |
| BbvI | GCAGC | 3 cut(s) | 39, 951, 958 |
| BccI | CCATC | 1 cut(s) | 767 |
| BceAI | ACGGC | 1 cut(s) | 874 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 214, 248 |
| BciT130I | CCWGG | 2 cut(s) | 6, 824 |
| BciVI | GTATCC | 1 cut(s) | 613 |
| BcnI | CCSGG | 1 cut(s) | 90 |
| BcoDI | GTCTC | 2 cut(s) | 418, 804 |
| BfaI | CTAG | 5 cut(s) | 56, 111, 206, 590, 1004 |
| BfoI | RGCGCY | 1 cut(s) | 780 |
| BfuAI | ACCTGC | 1 cut(s) | 749 |
| BfuI | GTATCC | 1 cut(s) | 613 |
| BisI | GCNGC | 4 cut(s) | 53, 540, 940, 972 |
| BlsI | GCNGC | 4 cut(s) | 54, 541, 941, 973 |
| Bme1390I | CCNGG | 3 cut(s) | 6, 90, 824 |
| BmiI | GGNNCC | 2 cut(s) | 363, 858 |
| BmrFI | CCNGG | 3 cut(s) | 6, 90, 824 |
| BpiI | GAAGAC | 1 cut(s) | 755 |
| BpuEI | CTTGAG | 1 cut(s) | 512 |
| BpuMI | CCSGG | 1 cut(s) | 90 |
| BsaAI | YACGTR | 1 cut(s) | 910 |
| BsaJI | CCNNGG | 5 cut(s) | 5, 299, 483, 792, 871 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 489 |
| Bse1I | ACTGG | 5 cut(s) | 14, 105, 139, 357, 387 |
| Bse3DI | GCAATG | 2 cut(s) | 145, 966 |
| BseBI | CCWGG | 2 cut(s) | 6, 824 |
| BseDI | CCNNGG | 5 cut(s) | 5, 299, 483, 792, 871 |
| BseGI | GGATG | 2 cut(s) | 46, 778 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 489 |
| BseMI | GCAATG | 2 cut(s) | 145, 966 |
| BseNI | ACTGG | 5 cut(s) | 14, 105, 139, 357, 387 |
| BseRI | GAGGAG | 1 cut(s) | 229 |
| BseXI | GCAGC | 3 cut(s) | 39, 951, 958 |
| BseYI | CCCAGC | 1 cut(s) | 382 |
| Bsh1236I | CGCG | 4 cut(s) | 318, 497, 563, 585 |
| BshFI | GGCC | 2 cut(s) | 800, 885 |
| BsiHKAI | GWGCWC | 1 cut(s) | 237 |
| BsiSI | CCGG | 1 cut(s) | 90 |
| BslFI | GGGAC | 1 cut(s) | 290 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 489 |
| BsmAI | GTCTC | 2 cut(s) | 418, 804 |
| BsmBI | CGTCTC | 1 cut(s) | 804 |
| BsmFI | GGGAC | 1 cut(s) | 290 |
| BsmI | GAATGC | 1 cut(s) | 655 |
| BsnI | GGCC | 2 cut(s) | 800, 885 |
| Bsp1286I | GDGCHC | 2 cut(s) | 237, 664 |
| Bsp143I | GATC | 2 cut(s) | 498, 856 |
| Bsp68I | TCGCGA | 1 cut(s) | 497 |
| BspACI | CCGC | 8 cut(s) | 316, 408, 540, 561, 899, 914, 948, 960 |
| BspANI | GGCC | 2 cut(s) | 800, 885 |
| BspFNI | CGCG | 4 cut(s) | 318, 497, 563, 585 |
| BspLI | GGNNCC | 2 cut(s) | 363, 858 |
| BspMI | ACCTGC | 1 cut(s) | 749 |
| BspPI | GGATC | 2 cut(s) | 851, 864 |
| BsrDI | GCAATG | 2 cut(s) | 145, 966 |
| BsrI | ACTGG | 5 cut(s) | 14, 105, 139, 357, 387 |
| BssECI | CCNNGG | 5 cut(s) | 5, 299, 483, 792, 871 |
| BssMI | GATC | 2 cut(s) | 498, 856 |
| BssT1I | CCWWGG | 1 cut(s) | 871 |
| Bst2UI | CCWGG | 2 cut(s) | 6, 824 |
| Bst4CI | ACNGT | 2 cut(s) | 303, 339 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 968 |
| BstBAI | YACGTR | 1 cut(s) | 910 |
| BstC8I | GCNNGC | 9 cut(s) | 226, 308, 312, 316, 346, 379, 887, 901, 999 |
| BstDEI | CTNAG | 2 cut(s) | 78, 624 |
| BstDSI | CCRYGG | 1 cut(s) | 299 |
| BstEII | GGTNACC | 1 cut(s) | 92 |
| BstF5I | GGATG | 2 cut(s) | 46, 778 |
| BstFNI | CGCG | 4 cut(s) | 318, 497, 563, 585 |
| BstH2I | RGCGCY | 1 cut(s) | 780 |
| BstHHI | GCGC | 3 cut(s) | 320, 600, 779 |
| BstKTI | GATC | 2 cut(s) | 501, 859 |
| BstMAI | GTCTC | 2 cut(s) | 418, 804 |
| BstMBI | GATC | 2 cut(s) | 498, 856 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 10, 383, 452, 659, 774, 785, 882, 922, 968 |
| BstNI | CCWGG | 2 cut(s) | 6, 824 |
| BstNSI | RCATGY | 2 cut(s) | 326, 614 |
| BstPI | GGTNACC | 1 cut(s) | 92 |
| BstSCI | CCNGG | 3 cut(s) | 4, 88, 822 |
| BstSNI | TACGTA | 1 cut(s) | 910 |
| BstUI | CGCG | 4 cut(s) | 318, 497, 563, 585 |
| BstV1I | GCAGC | 3 cut(s) | 39, 951, 958 |
| BstV2I | GAAGAC | 1 cut(s) | 755 |
| BstX2I | RGATCY | 1 cut(s) | 856 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 306, 424, 893 |
| BstYI | RGATCY | 1 cut(s) | 856 |
| BsuI | GTATCC | 1 cut(s) | 613 |
| BsuRI | GGCC | 2 cut(s) | 800, 885 |
| BtgI | CCRYGG | 1 cut(s) | 299 |
| BtsCI | GGATG | 2 cut(s) | 46, 778 |
| BtsIMutI | CAGTG | 3 cut(s) | 394, 701, 980 |
| BtuMI | TCGCGA | 1 cut(s) | 497 |
| BveI | ACCTGC | 1 cut(s) | 749 |
| Cac8I | GCNNGC | 9 cut(s) | 226, 308, 312, 316, 346, 379, 887, 901, 999 |
| CfoI | GCGC | 3 cut(s) | 320, 600, 779 |
| CseI | GACGC | 1 cut(s) | 735 |
| Csp6I | GTAC | 3 cut(s) | 142, 907, 911 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 235, 270, 777, 812 |
| CviAII | CATG | 7 cut(s) | 121, 323, 505, 611, 665, 712, 802 |
| CviQI | GTAC | 3 cut(s) | 142, 907, 911 |
| DdeI | CTNAG | 2 cut(s) | 78, 624 |
| DpnI | GATC | 2 cut(s) | 500, 858 |
| DpnII | GATC | 2 cut(s) | 498, 856 |
| EaeI | YGGCCR | 2 cut(s) | 798, 883 |
| Eco105I | TACGTA | 1 cut(s) | 910 |
| Eco130I | CCWWGG | 1 cut(s) | 871 |
| Eco24I | GRGCYC | 1 cut(s) | 664 |
| Eco91I | GGTNACC | 1 cut(s) | 92 |
| EcoO65I | GGTNACC | 1 cut(s) | 92 |
| EcoRII | CCWGG | 2 cut(s) | 4, 822 |
| EcoT14I | CCWWGG | 1 cut(s) | 871 |
| EcoT38I | GRGCYC | 1 cut(s) | 664 |
| ErhI | CCWWGG | 1 cut(s) | 871 |
| Esp3I | CGTCTC | 1 cut(s) | 804 |
| FaeI | CATG | 7 cut(s) | 124, 326, 508, 614, 668, 715, 805 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 176, 208, 430, 462 |
| FaqI | GGGAC | 1 cut(s) | 290 |
| FatI | CATG | 7 cut(s) | 120, 322, 504, 610, 664, 711, 801 |
| FauI | CCCGC | 2 cut(s) | 323, 892 |
| Fnu4HI | GCNGC | 4 cut(s) | 53, 540, 940, 972 |
| FokI | GGATG | 2 cut(s) | 53, 785 |
| FriOI | GRGCYC | 1 cut(s) | 664 |
| Fsp4HI | GCNGC | 4 cut(s) | 53, 540, 940, 972 |
| FspBI | CTAG | 5 cut(s) | 56, 111, 206, 590, 1004 |
| GlaI | GCGC | 3 cut(s) | 319, 599, 778 |
| GluI | GCNGC | 4 cut(s) | 53, 540, 940, 972 |
| GsaI | CCCAGC | 1 cut(s) | 386 |
| HaeII | RGCGCY | 1 cut(s) | 780 |
| HaeIII | GGCC | 2 cut(s) | 800, 885 |
| HapII | CCGG | 1 cut(s) | 90 |
| HgaI | GACGC | 1 cut(s) | 735 |
| HhaI | GCGC | 3 cut(s) | 320, 600, 779 |
| Hin1II | CATG | 7 cut(s) | 124, 326, 508, 614, 668, 715, 805 |
| Hin6I | GCGC | 3 cut(s) | 318, 598, 777 |
| HinP1I | GCGC | 3 cut(s) | 318, 598, 777 |
| HindIII | AAGCTT | 1 cut(s) | 846 |
| HinfI | GANTC | 4 cut(s) | 114, 278, 691, 919 |
| HpaII | CCGG | 1 cut(s) | 90 |
| HphI | GGTGA | 1 cut(s) | 104 |
| Hpy166II | GTNNAC | 1 cut(s) | 246 |
| Hpy188I | TCNGA | 3 cut(s) | 484, 646, 751 |
| Hpy188III | TCNNGA | 4 cut(s) | 467, 496, 529, 724 |
| Hpy8I | GTNNAC | 1 cut(s) | 246 |
| Hpy99I | CGWCG | 1 cut(s) | 290 |
| HpyAV | CCTTC | 2 cut(s) | 195, 925 |
| HpyCH4III | ACNGT | 2 cut(s) | 303, 339 |
| HpyCH4IV | ACGT | 2 cut(s) | 251, 909 |
| HpyCH4V | TGCA | 5 cut(s) | 344, 455, 614, 653, 805 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 10, 383, 452, 659, 774, 785, 882, 922, 968 |
| HpyF3I | CTNAG | 2 cut(s) | 78, 624 |
| HpySE526I | ACGT | 2 cut(s) | 251, 909 |
| Hsp92II | CATG | 7 cut(s) | 124, 326, 508, 614, 668, 715, 805 |
| HspAI | GCGC | 3 cut(s) | 318, 598, 777 |
| Kzo9I | GATC | 2 cut(s) | 498, 856 |
| LmnI | GCTCC | 1 cut(s) | 473 |
| Lsp1109I | GCAGC | 3 cut(s) | 39, 951, 958 |
| MaeI | CTAG | 5 cut(s) | 56, 111, 206, 590, 1004 |
| MaeII | ACGT | 2 cut(s) | 251, 909 |
| MaeIII | GTNAC | 1 cut(s) | 92 |
| MalI | GATC | 2 cut(s) | 500, 858 |
| MboI | GATC | 2 cut(s) | 498, 856 |
| MboII | GAAGA | 6 cut(s) | 223, 269, 272, 544, 755, 948 |
| MflI | RGATCY | 1 cut(s) | 856 |
| MhlI | GDGCHC | 2 cut(s) | 237, 664 |
| MlsI | TGGCCA | 2 cut(s) | 800, 885 |
| MluCI | AATT | 1 cut(s) | 815 |
| MluNI | TGGCCA | 2 cut(s) | 800, 885 |
| MlyI | GAGTC | 2 cut(s) | 108, 272 |
| Mox20I | TGGCCA | 2 cut(s) | 800, 885 |
| MscI | TGGCCA | 2 cut(s) | 800, 885 |
| Msp20I | TGGCCA | 2 cut(s) | 800, 885 |
| MspA1I | CMGCKG | 3 cut(s) | 410, 542, 916 |
| MspI | CCGG | 1 cut(s) | 90 |
| MspR9I | CCNGG | 3 cut(s) | 6, 90, 824 |
| Mva1269I | GAATGC | 1 cut(s) | 655 |
| MvaI | CCWGG | 2 cut(s) | 6, 824 |
| MvnI | CGCG | 4 cut(s) | 318, 497, 563, 585 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 10, 383, 452, 659, 774, 785, 882, 922, 968 |
| NciI | CCSGG | 1 cut(s) | 90 |
| NdeII | GATC | 2 cut(s) | 498, 856 |
| NlaIII | CATG | 7 cut(s) | 124, 326, 508, 614, 668, 715, 805 |
| NlaIV | GGNNCC | 2 cut(s) | 363, 858 |
| NmuCI | GTSAC | 1 cut(s) | 92 |
| NruI | TCGCGA | 1 cut(s) | 497 |
| NspI | RCATGY | 2 cut(s) | 326, 614 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 248 |
| PctI | GAATGC | 1 cut(s) | 655 |
| PfeI | GAWTC | 2 cut(s) | 691, 919 |
| PflFI | GACNNNGTC | 1 cut(s) | 745 |
| PkrI | GCNGC | 4 cut(s) | 54, 541, 941, 973 |
| PleI | GAGTC | 2 cut(s) | 108, 272 |
| PpsI | GAGTC | 2 cut(s) | 108, 272 |
| Ppu21I | YACGTR | 1 cut(s) | 910 |
| Psp1406I | AACGTT | 1 cut(s) | 251 |
| Psp6I | CCWGG | 2 cut(s) | 4, 822 |
| PspEI | GGTNACC | 1 cut(s) | 92 |
| PspFI | CCCAGC | 1 cut(s) | 382 |
| PspGI | CCWGG | 2 cut(s) | 4, 822 |
| PspN4I | GGNNCC | 2 cut(s) | 363, 858 |
| PsuI | RGATCY | 1 cut(s) | 856 |
| PsyI | GACNNNGTC | 1 cut(s) | 745 |
| RruI | TCGCGA | 1 cut(s) | 497 |
| RsaI | GTAC | 3 cut(s) | 143, 908, 912 |
| RsaNI | GTAC | 3 cut(s) | 142, 907, 911 |
| SatI | GCNGC | 4 cut(s) | 53, 540, 940, 972 |
| Sau3AI | GATC | 2 cut(s) | 498, 856 |
| SchI | GAGTC | 2 cut(s) | 108, 272 |
| ScrFI | CCNGG | 3 cut(s) | 6, 90, 824 |
| SduI | GDGCHC | 2 cut(s) | 237, 664 |
| SmlI | CTYRAG | 1 cut(s) | 527 |
| SmoI | CTYRAG | 1 cut(s) | 527 |
| SnaBI | TACGTA | 1 cut(s) | 910 |
| Sse9I | AATT | 1 cut(s) | 815 |
| SsiI | CCGC | 8 cut(s) | 316, 408, 540, 561, 899, 914, 948, 960 |
| SspI | AATATT | 1 cut(s) | 514 |
| SspMI | CTAG | 5 cut(s) | 56, 111, 206, 590, 1004 |
| StyD4I | CCNGG | 3 cut(s) | 4, 88, 822 |
| StyI | CCWWGG | 1 cut(s) | 871 |
| TaaI | ACNGT | 2 cut(s) | 303, 339 |
| TaiI | ACGT | 2 cut(s) | 254, 912 |
| TaqI | TCGA | 1 cut(s) | 1011 |
| TasI | AATT | 1 cut(s) | 815 |
| TauI | GCSGC | 1 cut(s) | 542 |
| TfiI | GAWTC | 2 cut(s) | 691, 919 |
| TscAI | CASTG | 3 cut(s) | 394, 701, 987 |
| TseFI | GTSAC | 1 cut(s) | 92 |
| TseI | GCWGC | 3 cut(s) | 52, 939, 971 |
| Tsp45I | GTSAC | 1 cut(s) | 92 |
| TspDTI | ATGAA | 1 cut(s) | 57 |
| TspRI | CASTG | 3 cut(s) | 394, 701, 987 |
| Tth111I | GACNNNGTC | 1 cut(s) | 745 |
| XceI | RCATGY | 2 cut(s) | 326, 614 |
| XspI | CTAG | 5 cut(s) | 56, 111, 206, 590, 1004 |