Rmu_sc0018537.1_g000003

Retrotransposon gag protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0018537.1
OG0000057
Physical Location & Seq
Forward (+)
18732 .. 21153
2422 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0018537.1_g000003.1.cds

Sequence Viewer

Length: 1635 bp
atgatcctcagtcctagtctctctaagagccgattgtcagcatcactagatcaacccggcgaccgtgcttccagtcctagtctctccgagagccgactgctagtgctactgccaccgatacaaccagcgaagcaaggaacactagagaagaaccttgtgacgaggttggtgctctcctcgtccacaaagcttgaagaagaagtcaggtcaagggactccctcgacgactgcaccccgcgcaaaaacccttaccaaaaggtttacgctaactgctcaaagcataagaccttcagttacagaccgcattctcgcacggactgtcgtggtctttctgaagaacaagtgacccaaagattttctcgtcattcgcaaccacccaacatgtcaactgatcgggatgagaatcacccgaccactactgagggtcagagtgtcactattaatcaggccgctaagcctattgtcactacagctgtctccaatacagtgggaagtggagagagagaggcttttgttgcgaagcctattctagagggagcgacctccgaggtaaggttctcgatcatcatgaagaatattgaaaatcatcgtaagaagatagccgctgattttgaaagggaaaccgcgaaaacagatcagctcatacgcgaactagaccagcgcattacccgacatgcagaggatactaaacaacagatcgcacaatcagagaatgcagtaagggcctatgccgcaggtatcgctagcgagcagaatcagtgccagagagaaatcatggaggctatcacgaaccaaaccaagcagactgcgtcagatatggcaggtcttatcaaggatggcgctaacctcgcaaccgagccatctggtgcgggcaagtacgtgccgccgaatcagcaagagaaggttagcagcaataccgctacttcttccgcaaccgttgctgctacaccactgaaaaataaagagcaagctctggttatcggcgacagcaaagaaaaggccacctcgccatgccgacagaccaccagacagaagcatcaggcctcgaaagttgttgaaactacatccaactctgctacattcgttcagtacgacagcgatggggcagaaaaaatataccaggaactgccaggaagttattacgagatttaccagaccagcaacccgattaagataacagccttgtcaaaagagacgcctatgacagcagtgactcttcagcaacaagctacaacccgcgttgtacatgtaggagaggggccggcgactgtaaaccaagcaatacctttgcaggctactagccagactgtggcgacaccacctcctcctccgggtccagaatatgtaagacgtgaagaggtagaggagatgctcaggttggctaatcctagggcccaactggatggggtttatgagggacctttcccaccgcatatcatgctcgcgccctttcctaggggctataaaaatatcatattttctactttttcaggggaagacaacgaggatgcggcaacccatttggccaggtttagggtgcaatgcggccaataccagaatgataatatcctcaaatgcagaatcttcggtacttatctttctggagctgccttcagatggttttccaagctttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotrans_gag

Protein Analysis

544

Amino Acids

60.0

Weight (kDa)

8.49

Isoelectric Point (pI)

45.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000057)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00341 FvH4_2g18201 FvH4_2g24491 FvH4_2g24511 FvH4_3g22961 FvH4_3g33532 FvH4_3g33534 FvH4_4g05275 FvH4_4g12372 FvH4_5g20143 FvH4_7g12392
pyrus_communis pycom12g16120
rosa_chinensis RchiOBHm_Chr5g0023531 RchiOBHm_Chr6g0271201
rosa_laevigata RLG00000030639
rosa_multiflora Rmu_co8016136.1_g000001 Rmu_co8027180.1_g000001 Rmu_co8041016.1_g000001 Rmu_co8052812.1_g000001 Rmu_co8152468.1_g000001 Rmu_co8165796.1_g000001 Rmu_co8170214.1_g000001 Rmu_co8227433.1_g000001 Rmu_co8241379.1_g000001 Rmu_co8254305.1_g000001 Rmu_co8258647.1_g000001 Rmu_co8265535.1_g000002 Rmu_co8276845.1_g000001 Rmu_co8296303.1_g000001 Rmu_co8304827.1_g000001 Rmu_co8308345.1_g000001 Rmu_co8320493.1_g000002 Rmu_co8326955.1_g000001 Rmu_co8331007.1_g000001 Rmu_co8335625.1_g000001 Rmu_co8354465.1_g000001 Rmu_co8360201.1_g000001 Rmu_co8362075.1_g000002 Rmu_co8362991.1_g000001 Rmu_co8364567.1_g000001 Rmu_co8365273.1_g000001 Rmu_co8387267.1_g000001 Rmu_co8395251.1_g000002 Rmu_co8396677.1_g000001 Rmu_co8457659.1_g000001 Rmu_co8478117.1_g000001 Rmu_co8487163.1_g000001 Rmu_co8498169.1_g000001 Rmu_sc0000029.1_g000022 Rmu_sc0000063.1_g000007 Rmu_sc0000112.1_g000020 Rmu_sc0000146.1_g000006 Rmu_sc0000245.1_g000015 Rmu_sc0000276.1_g000036 Rmu_sc0000334.1_g000033 Rmu_sc0000334.1_g000034 Rmu_sc0000434.1_g000019 Rmu_sc0000441.1_g000118 Rmu_sc0000533.1_g000054 Rmu_sc0000533.1_g000055 Rmu_sc0000595.1_g000041 Rmu_sc0000663.1_g000019 Rmu_sc0000673.1_g000002 Rmu_sc0000698.1_g000102 Rmu_sc0000745.1_g000007 Rmu_sc0000768.1_g000018 Rmu_sc0000811.1_g000012 Rmu_sc0000826.1_g000009 Rmu_sc0000826.1_g000011 Rmu_sc0001051.1_g000042 Rmu_sc0001051.1_g000043 Rmu_sc0001148.1_g000014 Rmu_sc0001198.1_g000021 Rmu_sc0001227.1_g000008 Rmu_sc0001250.1_g000028 Rmu_sc0001395.1_g000019 Rmu_sc0001395.1_g000020 Rmu_sc0001396.1_g000002 Rmu_sc0001424.1_g000007 Rmu_sc0001455.1_g000025 Rmu_sc0001455.1_g000029 Rmu_sc0001499.1_g000036 Rmu_sc0001539.1_g000001 Rmu_sc0001562.1_g000027 Rmu_sc0001563.1_g000024 Rmu_sc0001719.1_g000022 Rmu_sc0001796.1_g000008 Rmu_sc0001884.1_g000022 Rmu_sc0001903.1_g000018 Rmu_sc0002041.1_g000012 Rmu_sc0002096.1_g000002 Rmu_sc0002126.1_g000027 Rmu_sc0002181.1_g000010 Rmu_sc0002259.1_g000004 Rmu_sc0002279.1_g000018 Rmu_sc0002312.1_g000060 Rmu_sc0002383.1_g000011 Rmu_sc0002401.1_g000012 Rmu_sc0002509.1_g000028 Rmu_sc0002569.1_g000008 Rmu_sc0002587.1_g000037 Rmu_sc0002665.1_g000006 Rmu_sc0002698.1_g000018 Rmu_sc0002724.1_g000002 Rmu_sc0002727.1_g000011 Rmu_sc0002927.1_g000055 Rmu_sc0002927.1_g000056 Rmu_sc0002943.1_g000009 Rmu_sc0002943.1_g000023 Rmu_sc0002998.1_g000001 Rmu_sc0003089.1_g000036 Rmu_sc0003127.1_g000022 Rmu_sc0003127.1_g000040 Rmu_sc0003207.1_g000010 Rmu_sc0003207.1_g000011 Rmu_sc0003275.1_g000034 Rmu_sc0003275.1_g000036 Rmu_sc0003337.1_g000047 Rmu_sc0003376.1_g000004 Rmu_sc0003522.1_g000024 Rmu_sc0003613.1_g000007 Rmu_sc0003708.1_g000026 Rmu_sc0003784.1_g000018 Rmu_sc0004079.1_g000005 Rmu_sc0004092.1_g000017 Rmu_sc0004168.1_g000058 Rmu_sc0004174.1_g000019 Rmu_sc0004199.1_g000049 Rmu_sc0004230.1_g000005 Rmu_sc0004283.1_g000021 Rmu_sc0004283.1_g000022 Rmu_sc0004314.1_g000017 Rmu_sc0004538.1_g000006 Rmu_sc0004542.1_g000011 Rmu_sc0004602.1_g000024 Rmu_sc0004641.1_g000006 Rmu_sc0004862.1_g000011 Rmu_sc0004941.1_g000043 Rmu_sc0005003.1_g000003 Rmu_sc0005112.1_g000018 Rmu_sc0005144.1_g000014 Rmu_sc0005266.1_g000014 Rmu_sc0005418.1_g000004 Rmu_sc0005627.1_g000006 Rmu_sc0005652.1_g000022 Rmu_sc0005747.1_g000032 Rmu_sc0005982.1_g000013 Rmu_sc0006050.1_g000017 Rmu_sc0006059.1_g000035 Rmu_sc0006128.1_g000002 Rmu_sc0006228.1_g000009 Rmu_sc0006243.1_g000009 Rmu_sc0006300.1_g000004 Rmu_sc0006463.1_g000007 Rmu_sc0006579.1_g000016 Rmu_sc0006595.1_g000011 Rmu_sc0006624.1_g000006 Rmu_sc0006624.1_g000007 Rmu_sc0006624.1_g000008 Rmu_sc0006674.1_g000025 Rmu_sc0006792.1_g000013 Rmu_sc0006872.1_g000022 Rmu_sc0006984.1_g000009 Rmu_sc0006984.1_g000010 Rmu_sc0006986.1_g000011 Rmu_sc0007016.1_g000001 Rmu_sc0007221.1_g000006 Rmu_sc0007222.1_g000005 Rmu_sc0007222.1_g000006 Rmu_sc0007251.1_g000001 Rmu_sc0007777.1_g000037 Rmu_sc0007826.1_g000018 Rmu_sc0008053.1_g000015 Rmu_sc0008502.1_g000006 Rmu_sc0008659.1_g000009 Rmu_sc0009045.1_g000009 Rmu_sc0009045.1_g000010 Rmu_sc0009060.1_g000012 Rmu_sc0009360.1_g000024 Rmu_sc0009431.1_g000001 Rmu_sc0009606.1_g000014 Rmu_sc0009774.1_g000001 Rmu_sc0009844.1_g000014 Rmu_sc0010313.1_g000001 Rmu_sc0010454.1_g000008 Rmu_sc0010543.1_g000016 Rmu_sc0010900.1_g000002 Rmu_sc0010925.1_g000009 Rmu_sc0011136.1_g000012 Rmu_sc0011534.1_g000004 Rmu_sc0011809.1_g000007 Rmu_sc0011917.1_g000005 Rmu_sc0012103.1_g000001 Rmu_sc0012287.1_g000001 Rmu_sc0012303.1_g000007 Rmu_sc0012344.1_g000009 Rmu_sc0012674.1_g000007 Rmu_sc0012686.1_g000001 Rmu_sc0012742.1_g000005 Rmu_sc0012746.1_g000026 Rmu_sc0012746.1_g000027 Rmu_sc0013419.1_g000008 Rmu_sc0014866.1_g000004 Rmu_sc0015325.1_g000011 Rmu_sc0015486.1_g000005 Rmu_sc0015651.1_g000002 Rmu_sc0015783.1_g000001 Rmu_sc0016387.1_g000009 Rmu_sc0017518.1_g000005 Rmu_sc0018480.1_g000001 Rmu_sc0018537.1_g000003 Rmu_sc0019200.1_g000002 Rmu_sc0019544.1_g000014 Rmu_sc0019544.1_g000015 Rmu_sc0019873.1_g000001 Rmu_sc0020392.1_g000001 Rmu_sc0020466.1_g000001 Rmu_sc0022008.1_g000001 Rmu_sc0022008.1_g000002 Rmu_sc0022274.1_g000001 Rmu_sc0023644.1_g000005 Rmu_sc0024657.1_g000001 Rmu_sc0024721.1_g000003 Rmu_sc0025790.1_g000001 Rmu_sc0026866.1_g000001 Rmu_sc0027363.1_g000002 Rmu_sc0027485.1_g000001 Rmu_sc0028394.1_g000001 Rmu_sc0033121.1_g000002 Rmu_sc0033838.1_g000001 Rmu_sc0035536.1_g000001 Rmu_sc0036296.1_g000001 Rmu_sc0036297.1_g000001 Rmu_sc0036298.1_g000001 Rmu_sc0036797.1_g000001 Rmu_sc0037010.1_g000001 Rmu_sc0037444.1_g000002 Rmu_sc0039012.1_g000002 Rmu_sc0040172.1_g000001 Rmu_sc0042083.1_g000001 Rmu_ssc0000018.1_g000001 Rmu_ssc0000171.1_g000032 Rmu_ssc0000213.1_g000064 Rmu_ssc0000213.1_g000096 Rmu_ssc0000262.1_g000017 Rmu_ssc0000295.1_g000036 Rmu_ssc0000343.1_g000008 Rmu_ssc0000398.1_g000003 Rmu_ssc0000400.1_g000085 Rmu_ssc0000438.1_g000007 Rmu_ssc0000478.1_g000003
rosa_roxburghii Rroxscaffold_166G00440710 Rroxscaffold_166G00440720 Rroxscaffold_174G00435300 Rroxscaffold_174G00435310 Rroxscaffold_177G00434290 Rroxscaffold_177G00434300 Rroxscaffold_177G00434310 Rroxscaffold_178G00437310 Rroxscaffold_1G00002500 Rroxscaffold_1G00004730 Rroxscaffold_1G00008660 Rroxscaffold_1G00008670 Rroxscaffold_1G00008680 Rroxscaffold_1G00008690 Rroxscaffold_1G00010260 Rroxscaffold_1G00015670 Rroxscaffold_1G00021140 Rroxscaffold_1G00024380 Rroxscaffold_1G00032420 Rroxscaffold_1G00050600 Rroxscaffold_1G00050610 Rroxscaffold_1G00055970 Rroxscaffold_1G00066220 Rroxscaffold_2G00085370 Rroxscaffold_2G00092350 Rroxscaffold_2G00092360 Rroxscaffold_2G00093350 Rroxscaffold_2G00097090 Rroxscaffold_2G00108040 Rroxscaffold_2G00109970 Rroxscaffold_2G00111470 Rroxscaffold_2G00111480 Rroxscaffold_2G00112000 Rroxscaffold_2G00112060 Rroxscaffold_2G00129160 Rroxscaffold_2G00132340 Rroxscaffold_2G00136720 Rroxscaffold_2G00152910 Rroxscaffold_3G00223160 Rroxscaffold_3G00223170 Rroxscaffold_3G00223520 Rroxscaffold_3G00230980 Rroxscaffold_3G00245030 Rroxscaffold_3G00259050 Rroxscaffold_3G00259060 Rroxscaffold_3G00259070 Rroxscaffold_3G00267470 Rroxscaffold_3G00272040 Rroxscaffold_3G00272440 Rroxscaffold_3G00272450 Rroxscaffold_4G00285860 Rroxscaffold_4G00285870 Rroxscaffold_4G00294380 Rroxscaffold_4G00294390 Rroxscaffold_4G00297890 Rroxscaffold_4G00298150 Rroxscaffold_4G00303090 Rroxscaffold_4G00306480 Rroxscaffold_4G00306680 Rroxscaffold_4G00310490 Rroxscaffold_4G00310630 Rroxscaffold_4G00310670 Rroxscaffold_4G00310680 Rroxscaffold_4G00310690 Rroxscaffold_4G00317930 Rroxscaffold_4G00320190 Rroxscaffold_4G00323370 Rroxscaffold_4G00323380 Rroxscaffold_4G00324200 Rroxscaffold_4G00331220 Rroxscaffold_5G00339230 Rroxscaffold_5G00341260 Rroxscaffold_5G00343120 Rroxscaffold_5G00345440 Rroxscaffold_5G00345450 Rroxscaffold_5G00353190 Rroxscaffold_5G00353420 Rroxscaffold_5G00356560 Rroxscaffold_5G00359790 Rroxscaffold_5G00381710 Rroxscaffold_5G00381720 Rroxscaffold_5G00386250 Rroxscaffold_5G00387520 Rroxscaffold_6G00390180 Rroxscaffold_6G00392810 Rroxscaffold_6G00401230 Rroxscaffold_6G00402640 Rroxscaffold_6G00405640 Rroxscaffold_6G00405650 Rroxscaffold_6G00405850 Rroxscaffold_6G00405860 Rroxscaffold_6G00412020 Rroxscaffold_6G00415690 Rroxscaffold_6G00415700 Rroxscaffold_7G00168110 Rroxscaffold_7G00178950 Rroxscaffold_7G00178960 Rroxscaffold_7G00193670 Rroxscaffold_7G00203020 Rroxscaffold_7G00203340 Rroxscaffold_7G00203550 Rroxscaffold_7G00207220 Rroxscaffold_7G00207250 Rroxscaffold_7G00207430 Rroxscaffold_7G00209310 Rroxscaffold_7G00211530 Rroxscaffold_7G00211540 Rroxscaffold_7G00214160 Rroxscaffold_7G00216040 Rroxscaffold_7G00216800
rosa_samantha Rh1AG276800 Rh1CG260400 Rh3CG366700
rosa_wichuraiana Rw1G001440 Rw3G029210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 725, 812
AccB7I CCANNNNNTGG 1 cut(s) 1309
AccII CGCG 5 cut(s) 238, 626, 648, 1239, 1445
AcoI YGGCCR 2 cut(s) 1524, 1546
AcuI CTGAAG 4 cut(s) 274, 354, 1202, 1597
AcyI GRCGYC 1 cut(s) 1196
AfaI GTAC 4 cut(s) 878, 1091, 1245, 1591
AfiI CCNNNNNNNGG 6 cut(s) 552, 1309, 1331, 1455, 1533, 1617
AflIII ACRYGT 2 cut(s) 381, 1246
AgsI TTSAA 4 cut(s) 194, 581, 614, 1058
AjiI CACGTC 1 cut(s) 1352
AjnI CCWGG 3 cut(s) 1119, 1129, 1526
AluBI AGCT 7 cut(s) 190, 473, 640, 971, 1229, 1607, 1630
AluI AGCT 7 cut(s) 190, 473, 640, 971, 1229, 1607, 1630
Alw21I GWGCWC 1 cut(s) 174
Alw26I GTCTC 4 cut(s) 23, 86, 481, 1187
AlwNI CAGNNNCTG 1 cut(s) 1126
AoxI GGCC 8 cut(s) 447, 723, 999, 1041, 1259, 1392, 1524, 1546
ApaI GGGCCC 1 cut(s) 1396
ApeKI GCWGC 3 cut(s) 909, 941, 1607
AseI ATTAAT 1 cut(s) 441
AspA2I CCTAGG 2 cut(s) 1388, 1454
AspLEI GCGC 4 cut(s) 240, 663, 842, 1447
AspS9I GGNCC 6 cut(s) 723, 1259, 1334, 1392, 1393, 1418
AsuC2I CCSGG 2 cut(s) 57, 1332
AsuHPI GGTGA 1 cut(s) 398
AsuNHI GCTAGC 1 cut(s) 743
AvaII GGWCC 2 cut(s) 1334, 1418
AvrII CCTAGG 2 cut(s) 1388, 1454
BaeGI GKGCMC 1 cut(s) 1396
BalI TGGCCA 1 cut(s) 1526
BanII GRGCYC 1 cut(s) 1396
BbsI GAAGAC 1 cut(s) 1503
Bbv12I GWGCWC 1 cut(s) 174
BbvI GCAGC 3 cut(s) 921, 928, 1594
BccI CCATC 5 cut(s) 830, 868, 1094, 1397, 1611
BcgI CGANNNNNNTGC 4 cut(s) 151, 185, 1567, 1601
BciT130I CCWGG 3 cut(s) 1121, 1131, 1528
BciVI GTATCC 1 cut(s) 676
BcnI CCSGG 2 cut(s) 57, 1332
BcoDI GTCTC 4 cut(s) 23, 86, 481, 1187
BfmI CTRYAG 1 cut(s) 468
BfoI RGCGCY 1 cut(s) 843
BfuAI ACCTGC 2 cut(s) 725, 812
BfuI GTATCC 1 cut(s) 676
BisI GCNGC 9 cut(s) 450, 603, 732, 884, 910, 942, 1512, 1546, 1608
BlnI CCTAGG 2 cut(s) 1388, 1454
BlpI GCTNAGC 1 cut(s) 453
BlsI GCNGC 9 cut(s) 451, 604, 733, 885, 911, 943, 1513, 1547, 1609
Bme1390I CCNGG 5 cut(s) 57, 1121, 1131, 1332, 1528
Bme18I GGWCC 2 cut(s) 1334, 1418
BmgBI CACGTC 1 cut(s) 1352
BmgT120I GGNCC 6 cut(s) 723, 1259, 1334, 1392, 1393, 1418
BmiI GGNNCC 4 cut(s) 1260, 1335, 1394, 1419
BmrFI CCNGG 5 cut(s) 57, 1121, 1131, 1332, 1528
BmsI GCATC 4 cut(s) 50, 1045, 1359, 1498
BmtI GCTAGC 1 cut(s) 747
BpiI GAAGAC 1 cut(s) 1503
BpmI CTGGAG 1 cut(s) 1623
Bpu10I CCTNAGC 1 cut(s) 1373
Bpu1102I GCTNAGC 1 cut(s) 453
BpuMI CCSGG 2 cut(s) 57, 1332
BsaAI YACGTR 1 cut(s) 880
BsaBI GATNNNNATC 1 cut(s) 402
BsaHI GRCGYC 1 cut(s) 1196
BsaJI CCNNGG 3 cut(s) 546, 1388, 1454
BsaXI ACNNNNNCTCC 2 cut(s) 1306, 1336
Bsc4I CCNNNNNNNGG 6 cut(s) 552, 1309, 1331, 1455, 1533, 1617
Bse118I RCCGGY 1 cut(s) 1261
Bse1I ACTGG 2 cut(s) 72, 1404
Bse3DI GCAATG 1 cut(s) 1547
Bse8I GATNNNNATC 1 cut(s) 402
BseBI CCWGG 3 cut(s) 1121, 1131, 1528
BseDI CCNNGG 3 cut(s) 546, 1388, 1454
BseGI GGATG 5 cut(s) 403, 841, 1064, 1408, 1513
BseJI GATNNNNATC 1 cut(s) 402
BseLI CCNNNNNNNGG 6 cut(s) 552, 1309, 1331, 1455, 1533, 1617
BseMI GCAATG 1 cut(s) 1547
BseMII CTCAG 3 cut(s) 22, 411, 1387
BseNI ACTGG 2 cut(s) 72, 1404
BseRI GAGGAG 4 cut(s) 166, 1314, 1317, 1379
BseSI GKGCMC 1 cut(s) 1396
BseXI GCAGC 3 cut(s) 921, 928, 1594
BsgI GTGCAG 1 cut(s) 214
Bsh1236I CGCG 5 cut(s) 238, 626, 648, 1239, 1445
Bsh1285I CGRYCG 1 cut(s) 64
BshFI GGCC 8 cut(s) 449, 725, 1001, 1043, 1261, 1394, 1526, 1548
BsiEI CGRYCG 1 cut(s) 64
BsiHKAI GWGCWC 1 cut(s) 174
BsiSI CCGG 3 cut(s) 57, 1262, 1331
BslFI GGGAC 2 cut(s) 227, 1431
BslI CCNNNNNNNGG 6 cut(s) 552, 1309, 1331, 1455, 1533, 1617
BsmAI GTCTC 4 cut(s) 23, 86, 481, 1187
BsmBI CGTCTC 1 cut(s) 1187
BsmFI GGGAC 2 cut(s) 227, 1431
BsmI GAATGC 2 cut(s) 304, 718
BsnI GGCC 8 cut(s) 449, 725, 1001, 1043, 1261, 1394, 1526, 1548
Bsp120I GGGCCC 1 cut(s) 1392
Bsp1286I GDGCHC 2 cut(s) 174, 1396
Bsp1407I TGTACA 1 cut(s) 1243
Bsp143I GATC 6 cut(s) 3, 49, 391, 561, 634, 696
Bsp1720I GCTNAGC 1 cut(s) 453
BspANI GGCC 8 cut(s) 449, 725, 1001, 1043, 1261, 1394, 1526, 1548
BspCNI CTCAG 3 cut(s) 21, 412, 1386
BspFNI CGCG 5 cut(s) 238, 626, 648, 1239, 1445
BspHI TCATGA 1 cut(s) 567
BspLI GGNNCC 4 cut(s) 1260, 1335, 1394, 1419
BspMI ACCTGC 2 cut(s) 725, 812
BspOI GCTAGC 1 cut(s) 747
BsrDI GCAATG 1 cut(s) 1547
BsrFI RCCGGY 1 cut(s) 1261
BsrGI TGTACA 1 cut(s) 1243
BsrI ACTGG 2 cut(s) 72, 1404
BssAI RCCGGY 1 cut(s) 1261
BssECI CCNNGG 3 cut(s) 546, 1388, 1454
BssMI GATC 6 cut(s) 3, 49, 391, 561, 634, 696
BssNI GRCGYC 1 cut(s) 1196
BssT1I CCWWGG 2 cut(s) 1388, 1454
Bst2UI CCWGG 3 cut(s) 1121, 1131, 1528
Bst4CI ACNGT 6 cut(s) 65, 320, 487, 937, 1270, 1309
Bst6I CTCTTC 2 cut(s) 1221, 1350
BstACI GRCGYC 1 cut(s) 1196
BstAPI GCANNNNNTGC 2 cut(s) 938, 1438
BstAUI TGTACA 1 cut(s) 1243
BstBAI YACGTR 1 cut(s) 880
BstC8I GCNNGC 7 cut(s) 745, 749, 871, 969, 1263, 1293, 1443
BstDEI CTNAG 5 cut(s) 8, 24, 420, 453, 1373
BstENI CCTNNNNNAGG 1 cut(s) 1453
BstF5I GGATG 5 cut(s) 403, 841, 1064, 1408, 1513
BstFNI CGCG 5 cut(s) 238, 626, 648, 1239, 1445
BstH2I RGCGCY 1 cut(s) 843
BstHHI GCGC 4 cut(s) 240, 663, 842, 1447
BstKTI GATC 6 cut(s) 6, 52, 394, 564, 637, 699
BstMAI GTCTC 4 cut(s) 23, 86, 481, 1187
BstMBI GATC 6 cut(s) 3, 49, 391, 561, 634, 696
BstMCI CGRYCG 1 cut(s) 64
BstMWI GCNNNNNNNGC 9 cut(s) 237, 515, 722, 731, 740, 848, 892, 938, 1438
BstNI CCWGG 3 cut(s) 1121, 1131, 1528
BstNSI RCATGY 3 cut(s) 385, 677, 1250
BstSCI CCNGG 5 cut(s) 55, 1119, 1129, 1330, 1526
BstSFI CTRYAG 1 cut(s) 468
BstSLI GKGCMC 1 cut(s) 1396
BstUI CGCG 5 cut(s) 238, 626, 648, 1239, 1445
BstV1I GCAGC 3 cut(s) 921, 928, 1594
BstV2I GAAGAC 1 cut(s) 1503
BstXI CCANNNNNNTGG 2 cut(s) 487, 1403
BsuI GTATCC 1 cut(s) 676
BsuRI GGCC 8 cut(s) 449, 725, 1001, 1043, 1261, 1394, 1526, 1548
BtgZI GCGATG 1 cut(s) 1113
BtrI CACGTC 1 cut(s) 1352
BtsCI GGATG 5 cut(s) 403, 841, 1064, 1408, 1513
BtsI GCAGTG 1 cut(s) 1215
BtsIMutI CAGTG 4 cut(s) 492, 764, 950, 1215
BveI ACCTGC 2 cut(s) 725, 812
Cac8I GCNNGC 7 cut(s) 745, 749, 871, 969, 1263, 1293, 1443
CaiI CAGNNNCTG 1 cut(s) 1126
CciI TCATGA 1 cut(s) 567
CfoI GCGC 4 cut(s) 240, 663, 842, 1447
Cfr10I RCCGGY 1 cut(s) 1261
Cfr13I GGNCC 6 cut(s) 723, 1259, 1334, 1392, 1393, 1418
CseI GACGC 2 cut(s) 798, 1204
Csp6I GTAC 4 cut(s) 877, 1090, 1244, 1590
CspCI CAANNNNNGTGG 2 cut(s) 172, 207
CviAII CATG 7 cut(s) 382, 568, 674, 775, 1011, 1247, 1438
CviQI GTAC 4 cut(s) 877, 1090, 1244, 1590
DdeI CTNAG 5 cut(s) 8, 24, 420, 453, 1373
DpnI GATC 6 cut(s) 5, 51, 393, 563, 636, 698
DpnII GATC 6 cut(s) 3, 49, 391, 561, 634, 696
EaeI YGGCCR 2 cut(s) 1524, 1546
Eam1104I CTCTTC 2 cut(s) 1221, 1350
EarI CTCTTC 2 cut(s) 1221, 1350
Eco130I CCWWGG 2 cut(s) 1388, 1454
Eco147I AGGCCT 1 cut(s) 1043
Eco24I GRGCYC 1 cut(s) 1396
Eco47I GGWCC 2 cut(s) 1334, 1418
Eco57I CTGAAG 4 cut(s) 274, 354, 1202, 1597
EcoNI CCTNNNNNAGG 1 cut(s) 1453
EcoO109I RGGNCCY 3 cut(s) 723, 1392, 1418
EcoRII CCWGG 3 cut(s) 1119, 1129, 1526
EcoT14I CCWWGG 2 cut(s) 1388, 1454
EcoT38I GRGCYC 1 cut(s) 1396
ErhI CCWWGG 2 cut(s) 1388, 1454
Esp3I CGTCTC 1 cut(s) 1187
FaeI CATG 7 cut(s) 385, 571, 677, 778, 1014, 1250, 1441
FaqI GGGAC 2 cut(s) 227, 1431
FatI CATG 7 cut(s) 381, 567, 673, 774, 1010, 1246, 1437
FauI CCCGC 3 cut(s) 243, 862, 1244
Fnu4HI GCNGC 9 cut(s) 450, 603, 732, 884, 910, 942, 1512, 1546, 1608
FokI GGATG 5 cut(s) 410, 848, 1051, 1415, 1520
FriOI GRGCYC 1 cut(s) 1396
Fsp4HI GCNGC 9 cut(s) 450, 603, 732, 884, 910, 942, 1512, 1546, 1608
GlaI GCGC 4 cut(s) 239, 662, 841, 1446
GluI GCNGC 9 cut(s) 450, 603, 732, 884, 910, 942, 1512, 1546, 1608
GsuI CTGGAG 1 cut(s) 1623
HaeII RGCGCY 1 cut(s) 843
HaeIII GGCC 8 cut(s) 449, 725, 1001, 1043, 1261, 1394, 1526, 1548
HapII CCGG 3 cut(s) 57, 1262, 1331
HgaI GACGC 2 cut(s) 798, 1204
HhaI GCGC 4 cut(s) 240, 663, 842, 1447
Hin1I GRCGYC 1 cut(s) 1196
Hin1II CATG 7 cut(s) 385, 571, 677, 778, 1014, 1250, 1441
Hin6I GCGC 4 cut(s) 238, 661, 840, 1445
HinP1I GCGC 4 cut(s) 238, 661, 840, 1445
HincII GTYRAC 1 cut(s) 387
HindII GTYRAC 1 cut(s) 387
HindIII AAGCTT 2 cut(s) 188, 1628
HinfI GANTC 6 cut(s) 215, 403, 754, 889, 1213, 1581
HpaII CCGG 3 cut(s) 57, 1262, 1331
HphI GGTGA 1 cut(s) 398
Hpy166II GTNNAC 4 cut(s) 183, 262, 387, 1273
Hpy188I TCNGA 7 cut(s) 88, 334, 429, 547, 709, 814, 1616
Hpy188III TCNNGA 7 cut(s) 395, 530, 559, 568, 787, 1337, 1602
Hpy8I GTNNAC 4 cut(s) 183, 262, 387, 1273
Hpy99I CGWCG 1 cut(s) 227
HpyAV CCTTC 3 cut(s) 298, 895, 1621
HpyCH4III ACNGT 6 cut(s) 65, 320, 487, 937, 1270, 1309
HpyCH4IV ACGT 2 cut(s) 879, 1351
HpyCH4V TGCA 6 cut(s) 231, 677, 716, 1291, 1540, 1578
HpyF10VI GCNNNNNNNGC 9 cut(s) 237, 515, 722, 731, 740, 848, 892, 938, 1438
HpyF3I CTNAG 5 cut(s) 8, 24, 420, 453, 1373
HpySE526I ACGT 2 cut(s) 879, 1351
Hsp92I GRCGYC 1 cut(s) 1196
Hsp92II CATG 7 cut(s) 385, 571, 677, 778, 1014, 1250, 1441
HspAI GCGC 4 cut(s) 238, 661, 840, 1445
KroI GCCGGC 1 cut(s) 1261
KroNI GCCGGC 1 cut(s) 1263
Kzo9I GATC 6 cut(s) 3, 49, 391, 561, 634, 696
LmnI GCTCC 2 cut(s) 536, 1604
Lsp1109I GCAGC 3 cut(s) 921, 928, 1594
LweI GCATC 4 cut(s) 50, 1045, 1359, 1498
MaeII ACGT 2 cut(s) 879, 1351
MaeIII GTNAC 6 cut(s) 157, 293, 343, 433, 463, 1210
MalI GATC 6 cut(s) 5, 51, 393, 563, 636, 698
MboI GATC 6 cut(s) 3, 49, 391, 561, 634, 696
MhlI GDGCHC 2 cut(s) 174, 1396
MlsI TGGCCA 1 cut(s) 1526
MluNI TGGCCA 1 cut(s) 1526
MlyI GAGTC 2 cut(s) 209, 1207
MmeI TCCRAC 1 cut(s) 1092
Mox20I TGGCCA 1 cut(s) 1526
MroNI GCCGGC 1 cut(s) 1261
MscI TGGCCA 1 cut(s) 1526
MseI TTAA 2 cut(s) 441, 1170
Msp20I TGGCCA 1 cut(s) 1526
MspA1I CMGCKG 2 cut(s) 473, 605
MspI CCGG 3 cut(s) 57, 1262, 1331
MspR9I CCNGG 5 cut(s) 57, 1121, 1131, 1332, 1528
Mva1269I GAATGC 2 cut(s) 304, 718
MvaI CCWGG 3 cut(s) 1121, 1131, 1528
MvnI CGCG 5 cut(s) 238, 626, 648, 1239, 1445
MwoI GCNNNNNNNGC 9 cut(s) 237, 515, 722, 731, 740, 848, 892, 938, 1438
NaeI GCCGGC 1 cut(s) 1263
NciI CCSGG 2 cut(s) 57, 1332
NdeII GATC 6 cut(s) 3, 49, 391, 561, 634, 696
NgoMIV GCCGGC 1 cut(s) 1261
NheI GCTAGC 1 cut(s) 743
NlaIII CATG 7 cut(s) 385, 571, 677, 778, 1014, 1250, 1441
NlaIV GGNNCC 4 cut(s) 1260, 1335, 1394, 1419
NmuCI GTSAC 5 cut(s) 157, 343, 433, 463, 1210
NspI RCATGY 3 cut(s) 385, 677, 1250
PagI TCATGA 1 cut(s) 567
PceI AGGCCT 1 cut(s) 1043
PciI ACATGT 2 cut(s) 381, 1246
PcsI WCGNNNNNNNCGW 1 cut(s) 1089
PctI GAATGC 2 cut(s) 304, 718
PdiI GCCGGC 1 cut(s) 1263
PfeI GAWTC 4 cut(s) 403, 754, 889, 1581
PflFI GACNNNGTC 1 cut(s) 808
PflMI CCANNNNNTGG 1 cut(s) 1309
PkrI GCNGC 9 cut(s) 451, 604, 733, 885, 911, 943, 1513, 1547, 1609
PleI GAGTC 2 cut(s) 209, 1207
PpsI GAGTC 2 cut(s) 209, 1207
Ppu21I YACGTR 1 cut(s) 880
PpuMI RGGWCCY 1 cut(s) 1418
PscI ACATGT 2 cut(s) 381, 1246
PshBI ATTAAT 1 cut(s) 441
Psp5II RGGWCCY 1 cut(s) 1418
Psp6I CCWGG 3 cut(s) 1119, 1129, 1526
PspGI CCWGG 3 cut(s) 1119, 1129, 1526
PspN4I GGNNCC 4 cut(s) 1260, 1335, 1394, 1419
PspOMI GGGCCC 1 cut(s) 1392
PspPI GGNCC 6 cut(s) 723, 1259, 1334, 1392, 1393, 1418
PspPPI RGGWCCY 1 cut(s) 1418
PstNI CAGNNNCTG 1 cut(s) 1126
PsyI GACNNNGTC 1 cut(s) 808
PvuII CAGCTG 1 cut(s) 473
RsaI GTAC 4 cut(s) 878, 1091, 1245, 1591
RsaNI GTAC 4 cut(s) 877, 1090, 1244, 1590
SaqAI TTAA 2 cut(s) 441, 1170
SatI GCNGC 9 cut(s) 450, 603, 732, 884, 910, 942, 1512, 1546, 1608
Sau3AI GATC 6 cut(s) 3, 49, 391, 561, 634, 696
Sau96I GGNCC 6 cut(s) 723, 1259, 1334, 1392, 1393, 1418
SchI GAGTC 2 cut(s) 209, 1207
ScrFI CCNGG 5 cut(s) 57, 1121, 1131, 1332, 1528
SduI GDGCHC 2 cut(s) 174, 1396
SfaNI GCATC 4 cut(s) 50, 1045, 1359, 1498
SfcI CTRYAG 1 cut(s) 468
SinI GGWCC 2 cut(s) 1334, 1418
SseBI AGGCCT 1 cut(s) 1043
SspI AATATT 1 cut(s) 577
StuI AGGCCT 1 cut(s) 1043
StyD4I CCNGG 5 cut(s) 55, 1119, 1129, 1330, 1526
StyI CCWWGG 2 cut(s) 1388, 1454
TaaI ACNGT 6 cut(s) 65, 320, 487, 937, 1270, 1309
TaiI ACGT 2 cut(s) 882, 1354
TaqI TCGA 3 cut(s) 222, 560, 1046
TatI WGTACW 1 cut(s) 1243
TauI GCSGC 6 cut(s) 452, 605, 734, 886, 1514, 1548
TfiI GAWTC 4 cut(s) 403, 754, 889, 1581
Tru1I TTAA 2 cut(s) 441, 1170
Tru9I TTAA 2 cut(s) 441, 1170
TscAI CASTG 4 cut(s) 492, 764, 957, 1215
TseFI GTSAC 5 cut(s) 157, 343, 433, 463, 1210
TseI GCWGC 3 cut(s) 909, 941, 1607
Tsp45I GTSAC 5 cut(s) 157, 343, 433, 463, 1210
TspDTI ATGAA 1 cut(s) 584
TspGWI ACGGA 1 cut(s) 329
TspRI CASTG 4 cut(s) 492, 764, 957, 1215
Tth111I GACNNNGTC 1 cut(s) 808
Van91I CCANNNNNTGG 1 cut(s) 1309
VpaK11BI GGWCC 2 cut(s) 1334, 1418
VspI ATTAAT 1 cut(s) 441
XagI CCTNNNNNAGG 1 cut(s) 1453
XbaI TCTAGA 1 cut(s) 529
XceI RCATGY 3 cut(s) 385, 677, 1250
XmaJI CCTAGG 2 cut(s) 1388, 1454
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.