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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 57 |
| AciI | CCGC | 1 cut(s) | 411 |
| AclWI | GGATC | 3 cut(s) | 49, 210, 223 |
| AcoI | YGGCCR | 2 cut(s) | 144, 322 |
| AfaI | GTAC | 1 cut(s) | 347 |
| AgeI | ACCGGT | 1 cut(s) | 475 |
| AjnI | CCWGG | 2 cut(s) | 77, 120 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 272, 304 |
| AluBI | AGCT | 3 cut(s) | 139, 200, 251 |
| AluI | AGCT | 3 cut(s) | 139, 200, 251 |
| Alw21I | GWGCWC | 1 cut(s) | 88 |
| Alw26I | GTCTC | 2 cut(s) | 3, 55 |
| AlwI | GGATC | 3 cut(s) | 49, 210, 223 |
| Aor13HI | TCCGGA | 1 cut(s) | 57 |
| AoxI | GGCC | 3 cut(s) | 144, 322, 372 |
| ApeKI | GCWGC | 6 cut(s) | 22, 136, 197, 378, 381, 413 |
| AsiGI | ACCGGT | 1 cut(s) | 475 |
| AspLEI | GCGC | 1 cut(s) | 484 |
| AsuC2I | CCSGG | 1 cut(s) | 334 |
| AsuHPI | GGTGA | 1 cut(s) | 305 |
| BalI | TGGCCA | 2 cut(s) | 146, 324 |
| BamHI | GGATCC | 1 cut(s) | 215 |
| BanII | GRGCYC | 1 cut(s) | 317 |
| BauI | CACGAG | 1 cut(s) | 131 |
| Bbv12I | GWGCWC | 1 cut(s) | 88 |
| BbvI | GCAGC | 6 cut(s) | 34, 148, 209, 390, 393, 400 |
| BccI | CCATC | 2 cut(s) | 173, 206 |
| BciT130I | CCWGG | 2 cut(s) | 79, 122 |
| BclI | TGATCA | 1 cut(s) | 67 |
| BcnI | CCSGG | 1 cut(s) | 334 |
| BcoDI | GTCTC | 2 cut(s) | 3, 55 |
| BfaI | CTAG | 2 cut(s) | 224, 339 |
| BisI | GCNGC | 6 cut(s) | 23, 137, 198, 379, 382, 414 |
| BlsI | GCNGC | 6 cut(s) | 24, 138, 199, 380, 383, 415 |
| Bme1390I | CCNGG | 3 cut(s) | 79, 122, 334 |
| BmiI | GGNNCC | 1 cut(s) | 217 |
| BmrFI | CCNGG | 3 cut(s) | 79, 122, 334 |
| BmsI | GCATC | 2 cut(s) | 99, 425 |
| BpuEI | CTTGAG | 1 cut(s) | 348 |
| BpuMI | CCSGG | 1 cut(s) | 334 |
| BsaI | GGTCTC | 1 cut(s) | 3 |
| BsaJI | CCNNGG | 3 cut(s) | 120, 147, 441 |
| BsaWI | WCCGGW | 2 cut(s) | 57, 475 |
| Bse118I | RCCGGY | 1 cut(s) | 475 |
| Bse3DI | GCAATG | 2 cut(s) | 180, 214 |
| BseAI | TCCGGA | 1 cut(s) | 57 |
| BseBI | CCWGG | 2 cut(s) | 79, 122 |
| BseDI | CCNNGG | 3 cut(s) | 120, 147, 441 |
| BseGI | GGATG | 1 cut(s) | 165 |
| BseMI | GCAATG | 2 cut(s) | 180, 214 |
| BseXI | GCAGC | 6 cut(s) | 34, 148, 209, 390, 393, 400 |
| BshFI | GGCC | 3 cut(s) | 146, 324, 374 |
| BshTI | ACCGGT | 1 cut(s) | 475 |
| BsiHKAI | GWGCWC | 1 cut(s) | 88 |
| BsiSI | CCGG | 3 cut(s) | 58, 333, 476 |
| BsmAI | GTCTC | 2 cut(s) | 3, 55 |
| BsnI | GGCC | 3 cut(s) | 146, 324, 374 |
| Bso31I | GGTCTC | 1 cut(s) | 3 |
| Bsp1286I | GDGCHC | 2 cut(s) | 88, 317 |
| Bsp13I | TCCGGA | 1 cut(s) | 57 |
| Bsp143I | GATC | 4 cut(s) | 54, 67, 215, 259 |
| Bsp19I | CCATGG | 1 cut(s) | 147 |
| BspACI | CCGC | 1 cut(s) | 411 |
| BspANI | GGCC | 3 cut(s) | 146, 324, 374 |
| BspEI | TCCGGA | 1 cut(s) | 57 |
| BspHI | TCATGA | 1 cut(s) | 88 |
| BspLI | GGNNCC | 1 cut(s) | 217 |
| BspPI | GGATC | 3 cut(s) | 49, 210, 223 |
| BspTNI | GGTCTC | 1 cut(s) | 3 |
| BsrDI | GCAATG | 2 cut(s) | 180, 214 |
| BsrFI | RCCGGY | 1 cut(s) | 475 |
| BssAI | RCCGGY | 1 cut(s) | 475 |
| BssECI | CCNNGG | 3 cut(s) | 120, 147, 441 |
| BssMI | GATC | 4 cut(s) | 54, 67, 215, 259 |
| BssSI | CACGAG | 1 cut(s) | 131 |
| BssT1I | CCWWGG | 2 cut(s) | 147, 441 |
| Bst2BI | CACGAG | 1 cut(s) | 131 |
| Bst2UI | CCWGG | 2 cut(s) | 79, 122 |
| BstC8I | GCNNGC | 5 cut(s) | 84, 176, 326, 330, 376 |
| BstDSI | CCRYGG | 1 cut(s) | 147 |
| BstEII | GGTNACC | 1 cut(s) | 293 |
| BstF5I | GGATG | 1 cut(s) | 165 |
| BstHHI | GCGC | 1 cut(s) | 484 |
| BstKTI | GATC | 4 cut(s) | 57, 70, 218, 262 |
| BstMAI | GTCTC | 2 cut(s) | 3, 55 |
| BstMBI | GATC | 4 cut(s) | 54, 67, 215, 259 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 321 |
| BstNI | CCWGG | 2 cut(s) | 79, 122 |
| BstNSI | RCATGY | 1 cut(s) | 352 |
| BstPI | GGTNACC | 1 cut(s) | 293 |
| BstSCI | CCNGG | 3 cut(s) | 77, 120, 332 |
| BstV1I | GCAGC | 6 cut(s) | 34, 148, 209, 390, 393, 400 |
| BstX2I | RGATCY | 1 cut(s) | 215 |
| BstYI | RGATCY | 1 cut(s) | 215 |
| BsuRI | GGCC | 3 cut(s) | 146, 324, 374 |
| BtgI | CCRYGG | 1 cut(s) | 147 |
| BtsCI | GGATG | 1 cut(s) | 165 |
| BtsI | GCAGTG | 1 cut(s) | 384 |
| BtsIMutI | CAGTG | 1 cut(s) | 384 |
| Cac8I | GCNNGC | 5 cut(s) | 84, 176, 326, 330, 376 |
| CciI | TCATGA | 1 cut(s) | 88 |
| CfoI | GCGC | 1 cut(s) | 484 |
| Cfr10I | RCCGGY | 1 cut(s) | 475 |
| Csp6I | GTAC | 1 cut(s) | 346 |
| CspAI | ACCGGT | 1 cut(s) | 475 |
| CviAII | CATG | 4 cut(s) | 89, 148, 241, 349 |
| CviQI | GTAC | 1 cut(s) | 346 |
| DpnI | GATC | 4 cut(s) | 56, 69, 217, 261 |
| DpnII | GATC | 4 cut(s) | 54, 67, 215, 259 |
| EaeI | YGGCCR | 2 cut(s) | 144, 322 |
| Eco130I | CCWWGG | 2 cut(s) | 147, 441 |
| Eco24I | GRGCYC | 1 cut(s) | 317 |
| Eco31I | GGTCTC | 1 cut(s) | 3 |
| Eco91I | GGTNACC | 1 cut(s) | 293 |
| EcoO65I | GGTNACC | 1 cut(s) | 293 |
| EcoRII | CCWGG | 2 cut(s) | 77, 120 |
| EcoT14I | CCWWGG | 2 cut(s) | 147, 441 |
| EcoT38I | GRGCYC | 1 cut(s) | 317 |
| ErhI | CCWWGG | 2 cut(s) | 147, 441 |
| FaeI | CATG | 4 cut(s) | 92, 151, 244, 352 |
| FaiI | YATR | 6 cut(s) | 36, 90, 149, 242, 350, 500 |
| FatI | CATG | 4 cut(s) | 88, 147, 240, 348 |
| FbaI | TGATCA | 1 cut(s) | 67 |
| Fnu4HI | GCNGC | 6 cut(s) | 23, 137, 198, 379, 382, 414 |
| FokI | GGATG | 1 cut(s) | 152 |
| FriOI | GRGCYC | 1 cut(s) | 317 |
| Fsp4HI | GCNGC | 6 cut(s) | 23, 137, 198, 379, 382, 414 |
| FspBI | CTAG | 2 cut(s) | 224, 339 |
| GlaI | GCGC | 1 cut(s) | 483 |
| GluI | GCNGC | 6 cut(s) | 23, 137, 198, 379, 382, 414 |
| HaeIII | GGCC | 3 cut(s) | 146, 324, 374 |
| HapII | CCGG | 3 cut(s) | 58, 333, 476 |
| HhaI | GCGC | 1 cut(s) | 484 |
| Hin1II | CATG | 4 cut(s) | 92, 151, 244, 352 |
| Hin6I | GCGC | 1 cut(s) | 482 |
| HinP1I | GCGC | 1 cut(s) | 482 |
| HinfI | GANTC | 1 cut(s) | 74 |
| HpaII | CCGG | 3 cut(s) | 58, 333, 476 |
| HphI | GGTGA | 1 cut(s) | 305 |
| Hpy188I | TCNGA | 1 cut(s) | 279 |
| Hpy188III | TCNNGA | 5 cut(s) | 58, 71, 89, 263, 365 |
| HpyCH4V | TGCA | 4 cut(s) | 112, 185, 244, 416 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 321 |
| Hsp92II | CATG | 4 cut(s) | 92, 151, 244, 352 |
| HspAI | GCGC | 1 cut(s) | 482 |
| Kpn2I | TCCGGA | 1 cut(s) | 57 |
| Ksp22I | TGATCA | 1 cut(s) | 67 |
| Kzo9I | GATC | 4 cut(s) | 54, 67, 215, 259 |
| Lsp1109I | GCAGC | 6 cut(s) | 34, 148, 209, 390, 393, 400 |
| LweI | GCATC | 2 cut(s) | 99, 425 |
| MaeI | CTAG | 2 cut(s) | 224, 339 |
| MaeIII | GTNAC | 2 cut(s) | 293, 403 |
| MalI | GATC | 4 cut(s) | 56, 69, 217, 261 |
| MboI | GATC | 4 cut(s) | 54, 67, 215, 259 |
| MflI | RGATCY | 1 cut(s) | 215 |
| MhlI | GDGCHC | 2 cut(s) | 88, 317 |
| MlsI | TGGCCA | 2 cut(s) | 146, 324 |
| MluCI | AATT | 1 cut(s) | 447 |
| MluNI | TGGCCA | 2 cut(s) | 146, 324 |
| MlyI | GAGTC | 1 cut(s) | 83 |
| MnlI | CCTC | 4 cut(s) | 24, 31, 184, 265 |
| Mox20I | TGGCCA | 2 cut(s) | 146, 324 |
| MroI | TCCGGA | 1 cut(s) | 57 |
| MscI | TGGCCA | 2 cut(s) | 146, 324 |
| MseI | TTAA | 1 cut(s) | 153 |
| Msp20I | TGGCCA | 2 cut(s) | 146, 324 |
| MspA1I | CMGCKG | 1 cut(s) | 413 |
| MspI | CCGG | 3 cut(s) | 58, 333, 476 |
| MspR9I | CCNGG | 3 cut(s) | 79, 122, 334 |
| MvaI | CCWGG | 2 cut(s) | 79, 122 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 321 |
| NciI | CCSGG | 1 cut(s) | 334 |
| NcoI | CCATGG | 1 cut(s) | 147 |
| NdeII | GATC | 4 cut(s) | 54, 67, 215, 259 |
| NlaIII | CATG | 4 cut(s) | 92, 151, 244, 352 |
| NlaIV | GGNNCC | 1 cut(s) | 217 |
| NmuCI | GTSAC | 2 cut(s) | 293, 403 |
| NspI | RCATGY | 1 cut(s) | 352 |
| PagI | TCATGA | 1 cut(s) | 88 |
| PinAI | ACCGGT | 1 cut(s) | 475 |
| PkrI | GCNGC | 6 cut(s) | 24, 138, 199, 380, 383, 415 |
| PleI | GAGTC | 1 cut(s) | 82 |
| PpsI | GAGTC | 1 cut(s) | 82 |
| Psp6I | CCWGG | 2 cut(s) | 77, 120 |
| PspEI | GGTNACC | 1 cut(s) | 293 |
| PspGI | CCWGG | 2 cut(s) | 77, 120 |
| PspN4I | GGNNCC | 1 cut(s) | 217 |
| PsuI | RGATCY | 1 cut(s) | 215 |
| RsaI | GTAC | 1 cut(s) | 347 |
| RsaNI | GTAC | 1 cut(s) | 346 |
| SaqAI | TTAA | 1 cut(s) | 153 |
| SatI | GCNGC | 6 cut(s) | 23, 137, 198, 379, 382, 414 |
| Sau3AI | GATC | 4 cut(s) | 54, 67, 215, 259 |
| SchI | GAGTC | 1 cut(s) | 83 |
| ScrFI | CCNGG | 3 cut(s) | 79, 122, 334 |
| SduI | GDGCHC | 2 cut(s) | 88, 317 |
| SetI | ASST | 6 cut(s) | 35, 141, 195, 202, 253, 276 |
| SfaNI | GCATC | 2 cut(s) | 99, 425 |
| SmlI | CTYRAG | 1 cut(s) | 363 |
| SmoI | CTYRAG | 1 cut(s) | 363 |
| Sse9I | AATT | 1 cut(s) | 447 |
| SsiI | CCGC | 1 cut(s) | 411 |
| SspMI | CTAG | 2 cut(s) | 224, 339 |
| StyD4I | CCNGG | 3 cut(s) | 77, 120, 332 |
| StyI | CCWWGG | 2 cut(s) | 147, 441 |
| TaqI | TCGA | 2 cut(s) | 47, 258 |
| TasI | AATT | 1 cut(s) | 447 |
| TatI | WGTACW | 1 cut(s) | 345 |
| Tru1I | TTAA | 1 cut(s) | 153 |
| Tru9I | TTAA | 1 cut(s) | 153 |
| TscAI | CASTG | 1 cut(s) | 391 |
| TseFI | GTSAC | 2 cut(s) | 293, 403 |
| TseI | GCWGC | 6 cut(s) | 22, 136, 197, 378, 381, 413 |
| Tsp45I | GTSAC | 2 cut(s) | 293, 403 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| TspRI | CASTG | 1 cut(s) | 391 |
| XceI | RCATGY | 1 cut(s) | 352 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 307 |
| XspI | CTAG | 2 cut(s) | 224, 339 |