Rmu_sc0012746.1_g000027

Sister chromatid cohesion protein PDS5 homolog

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012746.1
Physical Location & Seq
Forward (+)
74926 .. 76314
1389 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012746.1_g000027.1.cds

Sequence Viewer

Length: 1389 bp
atgatccagtcaataggagaactgatcacagaggtgggtaggtttaagcatctcctcagagagactgatgctagaaaaaatgcgtccaaaggaacatatgttccagggaaacaccgcacagtggcagctcttggatacctacagccaacctatgatccttactatcaccatcaagaggaagaggttttccagggtgaagatgaagctgaagaagaagagaacgacgtctccgcgctagagttgacaggtaggaagaattcaaccctcaagcagttaaagatatctaaggagcttgtcaagctcaagtctgtggctttcaccaaacctgagttcacgacatatacatatgatgccaataaggcacatgagattctggatgagatgattgccatgaagatggtgaaaacagactttggccatttccctcgaccgaatcagttgaaagggaagaagtacagcaagttccacaacttgtggaaccataacacagctgattgtgtgaagctaaatgaccaaattcaggtatggctcaataatggcagtttgcaggtagaagcttcaactgccgcggcagcactagtagacttgaactcttttccggataccggagtcagtatggttgatgtgaactggcccaagaaaaaccagaggaaaccaaccctggatttgactacaaaggggaaagaagagagggatgaaggggaggaaacccctgtaaagaagaaagctaagcccatcgacgaagcctcaccattggtcccttgctcgcgatgcaaagaagaatgcagcatccaagtgtcgcacgcagaagtagagcagacatttcattttggttccctcccgccaatcaaatgggcttcaccgtcacgaaactacgagccttctagcccaaaggcgaaagatgaggtaaagtcaccaccatccccaaacaattccaacttgttcaaaaaactgaaagcggtcgcggccaatcagaaacaagaaggaagggcttggaatgagcacaaagatgccgtgatcaaacgttacgttcctcctgcttcaacgtttgccatcaaggaaggcaaatggtataccaaagagaaggggaaagtagtggagatcagcccttccaagaaaaggaaactgcagcgcaggttcggagaagccaagcgcgccttagaagctctggatcagggcctgatcaagccatcgcaactggttaaatctcctgagcaatatcagaaggagatggaagctgttaacattagtgatccgtggggatctctagttagctttagagagagagagagagtgacacaagcaaagtatagtggttcacctcccgccttagctggagactacgtccacttgaaagcttatactagtgtgtcgagccttgcggcctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

462

Amino Acids

52.07

Weight (kDa)

9.05

Isoelectric Point (pI)

40.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000057)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00341 FvH4_2g18201 FvH4_2g24491 FvH4_2g24511 FvH4_3g22961 FvH4_3g33532 FvH4_3g33534 FvH4_4g05275 FvH4_4g12372 FvH4_5g20143 FvH4_7g12392
pyrus_communis pycom12g16120
rosa_chinensis RchiOBHm_Chr5g0023531 RchiOBHm_Chr6g0271201
rosa_laevigata RLG00000030639
rosa_multiflora Rmu_co8016136.1_g000001 Rmu_co8027180.1_g000001 Rmu_co8041016.1_g000001 Rmu_co8052812.1_g000001 Rmu_co8152468.1_g000001 Rmu_co8165796.1_g000001 Rmu_co8170214.1_g000001 Rmu_co8227433.1_g000001 Rmu_co8241379.1_g000001 Rmu_co8254305.1_g000001 Rmu_co8258647.1_g000001 Rmu_co8265535.1_g000002 Rmu_co8276845.1_g000001 Rmu_co8296303.1_g000001 Rmu_co8304827.1_g000001 Rmu_co8308345.1_g000001 Rmu_co8320493.1_g000002 Rmu_co8326955.1_g000001 Rmu_co8331007.1_g000001 Rmu_co8335625.1_g000001 Rmu_co8354465.1_g000001 Rmu_co8360201.1_g000001 Rmu_co8362075.1_g000002 Rmu_co8362991.1_g000001 Rmu_co8364567.1_g000001 Rmu_co8365273.1_g000001 Rmu_co8387267.1_g000001 Rmu_co8395251.1_g000002 Rmu_co8396677.1_g000001 Rmu_co8457659.1_g000001 Rmu_co8478117.1_g000001 Rmu_co8487163.1_g000001 Rmu_co8498169.1_g000001 Rmu_sc0000029.1_g000022 Rmu_sc0000063.1_g000007 Rmu_sc0000112.1_g000020 Rmu_sc0000146.1_g000006 Rmu_sc0000245.1_g000015 Rmu_sc0000276.1_g000036 Rmu_sc0000334.1_g000033 Rmu_sc0000334.1_g000034 Rmu_sc0000434.1_g000019 Rmu_sc0000441.1_g000118 Rmu_sc0000533.1_g000054 Rmu_sc0000533.1_g000055 Rmu_sc0000595.1_g000041 Rmu_sc0000663.1_g000019 Rmu_sc0000673.1_g000002 Rmu_sc0000698.1_g000102 Rmu_sc0000745.1_g000007 Rmu_sc0000768.1_g000018 Rmu_sc0000811.1_g000012 Rmu_sc0000826.1_g000009 Rmu_sc0000826.1_g000011 Rmu_sc0001051.1_g000042 Rmu_sc0001051.1_g000043 Rmu_sc0001148.1_g000014 Rmu_sc0001198.1_g000021 Rmu_sc0001227.1_g000008 Rmu_sc0001250.1_g000028 Rmu_sc0001395.1_g000019 Rmu_sc0001395.1_g000020 Rmu_sc0001396.1_g000002 Rmu_sc0001424.1_g000007 Rmu_sc0001455.1_g000025 Rmu_sc0001455.1_g000029 Rmu_sc0001499.1_g000036 Rmu_sc0001539.1_g000001 Rmu_sc0001562.1_g000027 Rmu_sc0001563.1_g000024 Rmu_sc0001719.1_g000022 Rmu_sc0001796.1_g000008 Rmu_sc0001884.1_g000022 Rmu_sc0001903.1_g000018 Rmu_sc0002041.1_g000012 Rmu_sc0002096.1_g000002 Rmu_sc0002126.1_g000027 Rmu_sc0002181.1_g000010 Rmu_sc0002259.1_g000004 Rmu_sc0002279.1_g000018 Rmu_sc0002312.1_g000060 Rmu_sc0002383.1_g000011 Rmu_sc0002401.1_g000012 Rmu_sc0002509.1_g000028 Rmu_sc0002569.1_g000008 Rmu_sc0002587.1_g000037 Rmu_sc0002665.1_g000006 Rmu_sc0002698.1_g000018 Rmu_sc0002724.1_g000002 Rmu_sc0002727.1_g000011 Rmu_sc0002927.1_g000055 Rmu_sc0002927.1_g000056 Rmu_sc0002943.1_g000009 Rmu_sc0002943.1_g000023 Rmu_sc0002998.1_g000001 Rmu_sc0003089.1_g000036 Rmu_sc0003127.1_g000022 Rmu_sc0003127.1_g000040 Rmu_sc0003207.1_g000010 Rmu_sc0003207.1_g000011 Rmu_sc0003275.1_g000034 Rmu_sc0003275.1_g000036 Rmu_sc0003337.1_g000047 Rmu_sc0003376.1_g000004 Rmu_sc0003522.1_g000024 Rmu_sc0003613.1_g000007 Rmu_sc0003708.1_g000026 Rmu_sc0003784.1_g000018 Rmu_sc0004079.1_g000005 Rmu_sc0004092.1_g000017 Rmu_sc0004168.1_g000058 Rmu_sc0004174.1_g000019 Rmu_sc0004199.1_g000049 Rmu_sc0004230.1_g000005 Rmu_sc0004283.1_g000021 Rmu_sc0004283.1_g000022 Rmu_sc0004314.1_g000017 Rmu_sc0004538.1_g000006 Rmu_sc0004542.1_g000011 Rmu_sc0004602.1_g000024 Rmu_sc0004641.1_g000006 Rmu_sc0004862.1_g000011 Rmu_sc0004941.1_g000043 Rmu_sc0005003.1_g000003 Rmu_sc0005112.1_g000018 Rmu_sc0005144.1_g000014 Rmu_sc0005266.1_g000014 Rmu_sc0005418.1_g000004 Rmu_sc0005627.1_g000006 Rmu_sc0005652.1_g000022 Rmu_sc0005747.1_g000032 Rmu_sc0005982.1_g000013 Rmu_sc0006050.1_g000017 Rmu_sc0006059.1_g000035 Rmu_sc0006128.1_g000002 Rmu_sc0006228.1_g000009 Rmu_sc0006243.1_g000009 Rmu_sc0006300.1_g000004 Rmu_sc0006463.1_g000007 Rmu_sc0006579.1_g000016 Rmu_sc0006595.1_g000011 Rmu_sc0006624.1_g000006 Rmu_sc0006624.1_g000007 Rmu_sc0006624.1_g000008 Rmu_sc0006674.1_g000025 Rmu_sc0006792.1_g000013 Rmu_sc0006872.1_g000022 Rmu_sc0006984.1_g000009 Rmu_sc0006984.1_g000010 Rmu_sc0006986.1_g000011 Rmu_sc0007016.1_g000001 Rmu_sc0007221.1_g000006 Rmu_sc0007222.1_g000005 Rmu_sc0007222.1_g000006 Rmu_sc0007251.1_g000001 Rmu_sc0007777.1_g000037 Rmu_sc0007826.1_g000018 Rmu_sc0008053.1_g000015 Rmu_sc0008502.1_g000006 Rmu_sc0008659.1_g000009 Rmu_sc0009045.1_g000009 Rmu_sc0009045.1_g000010 Rmu_sc0009060.1_g000012 Rmu_sc0009360.1_g000024 Rmu_sc0009431.1_g000001 Rmu_sc0009606.1_g000014 Rmu_sc0009774.1_g000001 Rmu_sc0009844.1_g000014 Rmu_sc0010313.1_g000001 Rmu_sc0010454.1_g000008 Rmu_sc0010543.1_g000016 Rmu_sc0010900.1_g000002 Rmu_sc0010925.1_g000009 Rmu_sc0011136.1_g000012 Rmu_sc0011534.1_g000004 Rmu_sc0011809.1_g000007 Rmu_sc0011917.1_g000005 Rmu_sc0012103.1_g000001 Rmu_sc0012287.1_g000001 Rmu_sc0012303.1_g000007 Rmu_sc0012344.1_g000009 Rmu_sc0012674.1_g000007 Rmu_sc0012686.1_g000001 Rmu_sc0012742.1_g000005 Rmu_sc0012746.1_g000026 Rmu_sc0012746.1_g000027 Rmu_sc0013419.1_g000008 Rmu_sc0014866.1_g000004 Rmu_sc0015325.1_g000011 Rmu_sc0015486.1_g000005 Rmu_sc0015651.1_g000002 Rmu_sc0015783.1_g000001 Rmu_sc0016387.1_g000009 Rmu_sc0017518.1_g000005 Rmu_sc0018480.1_g000001 Rmu_sc0018537.1_g000003 Rmu_sc0019200.1_g000002 Rmu_sc0019544.1_g000014 Rmu_sc0019544.1_g000015 Rmu_sc0019873.1_g000001 Rmu_sc0020392.1_g000001 Rmu_sc0020466.1_g000001 Rmu_sc0022008.1_g000001 Rmu_sc0022008.1_g000002 Rmu_sc0022274.1_g000001 Rmu_sc0023644.1_g000005 Rmu_sc0024657.1_g000001 Rmu_sc0024721.1_g000003 Rmu_sc0025790.1_g000001 Rmu_sc0026866.1_g000001 Rmu_sc0027363.1_g000002 Rmu_sc0027485.1_g000001 Rmu_sc0028394.1_g000001 Rmu_sc0033121.1_g000002 Rmu_sc0033838.1_g000001 Rmu_sc0035536.1_g000001 Rmu_sc0036296.1_g000001 Rmu_sc0036297.1_g000001 Rmu_sc0036298.1_g000001 Rmu_sc0036797.1_g000001 Rmu_sc0037010.1_g000001 Rmu_sc0037444.1_g000002 Rmu_sc0039012.1_g000002 Rmu_sc0040172.1_g000001 Rmu_sc0042083.1_g000001 Rmu_ssc0000018.1_g000001 Rmu_ssc0000171.1_g000032 Rmu_ssc0000213.1_g000064 Rmu_ssc0000213.1_g000096 Rmu_ssc0000262.1_g000017 Rmu_ssc0000295.1_g000036 Rmu_ssc0000343.1_g000008 Rmu_ssc0000398.1_g000003 Rmu_ssc0000400.1_g000085 Rmu_ssc0000438.1_g000007 Rmu_ssc0000478.1_g000003
rosa_roxburghii Rroxscaffold_166G00440710 Rroxscaffold_166G00440720 Rroxscaffold_174G00435300 Rroxscaffold_174G00435310 Rroxscaffold_177G00434290 Rroxscaffold_177G00434300 Rroxscaffold_177G00434310 Rroxscaffold_178G00437310 Rroxscaffold_1G00002500 Rroxscaffold_1G00004730 Rroxscaffold_1G00008660 Rroxscaffold_1G00008670 Rroxscaffold_1G00008680 Rroxscaffold_1G00008690 Rroxscaffold_1G00010260 Rroxscaffold_1G00015670 Rroxscaffold_1G00021140 Rroxscaffold_1G00024380 Rroxscaffold_1G00032420 Rroxscaffold_1G00050600 Rroxscaffold_1G00050610 Rroxscaffold_1G00055970 Rroxscaffold_1G00066220 Rroxscaffold_2G00085370 Rroxscaffold_2G00092350 Rroxscaffold_2G00092360 Rroxscaffold_2G00093350 Rroxscaffold_2G00097090 Rroxscaffold_2G00108040 Rroxscaffold_2G00109970 Rroxscaffold_2G00111470 Rroxscaffold_2G00111480 Rroxscaffold_2G00112000 Rroxscaffold_2G00112060 Rroxscaffold_2G00129160 Rroxscaffold_2G00132340 Rroxscaffold_2G00136720 Rroxscaffold_2G00152910 Rroxscaffold_3G00223160 Rroxscaffold_3G00223170 Rroxscaffold_3G00223520 Rroxscaffold_3G00230980 Rroxscaffold_3G00245030 Rroxscaffold_3G00259050 Rroxscaffold_3G00259060 Rroxscaffold_3G00259070 Rroxscaffold_3G00267470 Rroxscaffold_3G00272040 Rroxscaffold_3G00272440 Rroxscaffold_3G00272450 Rroxscaffold_4G00285860 Rroxscaffold_4G00285870 Rroxscaffold_4G00294380 Rroxscaffold_4G00294390 Rroxscaffold_4G00297890 Rroxscaffold_4G00298150 Rroxscaffold_4G00303090 Rroxscaffold_4G00306480 Rroxscaffold_4G00306680 Rroxscaffold_4G00310490 Rroxscaffold_4G00310630 Rroxscaffold_4G00310670 Rroxscaffold_4G00310680 Rroxscaffold_4G00310690 Rroxscaffold_4G00317930 Rroxscaffold_4G00320190 Rroxscaffold_4G00323370 Rroxscaffold_4G00323380 Rroxscaffold_4G00324200 Rroxscaffold_4G00331220 Rroxscaffold_5G00339230 Rroxscaffold_5G00341260 Rroxscaffold_5G00343120 Rroxscaffold_5G00345440 Rroxscaffold_5G00345450 Rroxscaffold_5G00353190 Rroxscaffold_5G00353420 Rroxscaffold_5G00356560 Rroxscaffold_5G00359790 Rroxscaffold_5G00381710 Rroxscaffold_5G00381720 Rroxscaffold_5G00386250 Rroxscaffold_5G00387520 Rroxscaffold_6G00390180 Rroxscaffold_6G00392810 Rroxscaffold_6G00401230 Rroxscaffold_6G00402640 Rroxscaffold_6G00405640 Rroxscaffold_6G00405650 Rroxscaffold_6G00405850 Rroxscaffold_6G00405860 Rroxscaffold_6G00412020 Rroxscaffold_6G00415690 Rroxscaffold_6G00415700 Rroxscaffold_7G00168110 Rroxscaffold_7G00178950 Rroxscaffold_7G00178960 Rroxscaffold_7G00193670 Rroxscaffold_7G00203020 Rroxscaffold_7G00203340 Rroxscaffold_7G00203550 Rroxscaffold_7G00207220 Rroxscaffold_7G00207250 Rroxscaffold_7G00207430 Rroxscaffold_7G00209310 Rroxscaffold_7G00211530 Rroxscaffold_7G00211540 Rroxscaffold_7G00214160 Rroxscaffold_7G00216040 Rroxscaffold_7G00216800
rosa_samantha Rh1AG276800 Rh1CG260400 Rh3CG366700
rosa_wichuraiana Rw1G001440 Rw3G029210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 228
Acc36I ACCTGC 2 cut(s) 538, 1125
AccI GTMKAC 2 cut(s) 582, 1073
AccII CGCG 5 cut(s) 233, 569, 769, 965, 1155
AccIII TCCGGA 1 cut(s) 598
AciI CCGC 9 cut(s) 115, 231, 567, 569, 842, 959, 965, 1326, 1382
AclI AACGTT 2 cut(s) 1024, 1046
AclWI GGATC 4 cut(s) 149, 1179, 1247, 1270
AcoI YGGCCR 2 cut(s) 415, 966
AcsI RAATTY 2 cut(s) 256, 516
AcuI CTGAAG 1 cut(s) 228
AcyI GRCGYC 1 cut(s) 225
AfaI GTAC 1 cut(s) 455
AfiI CCNNNNNNNGG 5 cut(s) 121, 175, 520, 605, 1119
AgsI TTSAA 7 cut(s) 261, 442, 561, 589, 946, 1044, 1354
AhlI ACTAGT 2 cut(s) 577, 1364
AjnI CCWGG 3 cut(s) 103, 189, 660
AjuI GAANNNNNNNTTGG 2 cut(s) 314, 346
AleI CACNNNNGTG 1 cut(s) 32
AloI GAACNNNNNNTCC 6 cut(s) 84, 85, 116, 117, 212, 244
Alw21I GWGCWC 1 cut(s) 1005
Alw26I GTCTC 3 cut(s) 56, 232, 1332
AlwI GGATC 4 cut(s) 149, 1179, 1247, 1270
AlwNI CAGNNNCTG 1 cut(s) 1180
Aor13HI TCCGGA 1 cut(s) 598
AoxI GGCC 5 cut(s) 415, 632, 966, 1177, 1383
ApeKI GCWGC 4 cut(s) 125, 572, 786, 1129
ApoI RAATTY 2 cut(s) 256, 516
AspLEI GCGC 4 cut(s) 235, 1134, 1155, 1157
AspS9I GGNCC 3 cut(s) 633, 757, 1177
AsuHPI GGTGA 8 cut(s) 158, 206, 310, 412, 741, 852, 906, 1311
AvaII GGWCC 1 cut(s) 757
BaeI ACNNNNGTAYC 2 cut(s) 594, 627
BalI TGGCCA 1 cut(s) 417
Bbv12I GWGCWC 1 cut(s) 1005
BbvI GCAGC 4 cut(s) 137, 584, 798, 1141
BccI CCATC 7 cut(s) 177, 391, 743, 928, 1061, 1198, 1225
BceAI ACGGC 1 cut(s) 998
BciT130I CCWGG 3 cut(s) 105, 191, 662
BciVI GTATCC 2 cut(s) 128, 595
BclI TGATCA 3 cut(s) 24, 1017, 1182
BcoDI GTCTC 3 cut(s) 56, 232, 1332
BcuI ACTAGT 2 cut(s) 577, 1364
BfaI CTAG 6 cut(s) 72, 236, 578, 885, 1268, 1365
BfmI CTRYAG 2 cut(s) 140, 1127
BfuAI ACCTGC 2 cut(s) 538, 1125
BfuI GTATCC 2 cut(s) 128, 595
BglI GCCNNNNNGGC 1 cut(s) 359
BisI GCNGC 8 cut(s) 126, 567, 570, 573, 787, 966, 1130, 1383
BlpI GCTNAGC 1 cut(s) 729
BlsI GCNGC 8 cut(s) 127, 568, 571, 574, 788, 967, 1131, 1384
Bme1390I CCNGG 3 cut(s) 105, 191, 662
Bme18I GGWCC 1 cut(s) 757
BmgT120I GGNCC 3 cut(s) 633, 757, 1177
BmiI GGNNCC 3 cut(s) 479, 759, 835
BmrFI CCNGG 3 cut(s) 105, 191, 662
BmsI GCATC 6 cut(s) 58, 58, 340, 761, 798, 1000
BpmI CTGGAG 1 cut(s) 1356
Bpu10I CCTNAGC 2 cut(s) 1212, 1330
Bpu1102I GCTNAGC 1 cut(s) 729
BpuEI CTTGAG 2 cut(s) 251, 287
BsaHI GRCGYC 1 cut(s) 225
BsaJI CCNNGG 5 cut(s) 104, 190, 567, 660, 1256
BsaWI WCCGGW 2 cut(s) 598, 605
BsaXI ACNNNNNCTCC 4 cut(s) 212, 242, 1329, 1359
Bsc4I CCNNNNNNNGG 5 cut(s) 121, 175, 520, 605, 1119
Bse1I ACTGG 3 cut(s) 7, 635, 1203
BseAI TCCGGA 1 cut(s) 598
BseBI CCWGG 3 cut(s) 105, 191, 662
BseDI CCNNGG 5 cut(s) 104, 190, 567, 660, 1256
BseGI GGATG 4 cut(s) 382, 700, 789, 920
BseLI CCNNNNNNNGG 5 cut(s) 121, 175, 520, 605, 1119
BseMII CTCAG 3 cut(s) 70, 318, 1203
BseNI ACTGG 3 cut(s) 7, 635, 1203
BsePI GCGCGC 1 cut(s) 1153
BseRI GAGGAG 1 cut(s) 44
BseXI GCAGC 4 cut(s) 137, 584, 798, 1141
Bsh1236I CGCG 5 cut(s) 233, 569, 769, 965, 1155
Bsh1285I CGRYCG 2 cut(s) 431, 963
BshFI GGCC 5 cut(s) 417, 634, 968, 1179, 1385
BsiEI CGRYCG 2 cut(s) 431, 963
BsiHKAI GWGCWC 1 cut(s) 1005
BsiSI CCGG 2 cut(s) 599, 606
BslFI GGGAC 1 cut(s) 743
BslI CCNNNNNNNGG 5 cut(s) 121, 175, 520, 605, 1119
BsmAI GTCTC 3 cut(s) 56, 232, 1332
BsmBI CGTCTC 1 cut(s) 232
BsmFI GGGAC 1 cut(s) 743
BsmI GAATGC 1 cut(s) 788
BsnI GGCC 5 cut(s) 417, 634, 968, 1179, 1385
Bsp1286I GDGCHC 1 cut(s) 1005
Bsp13I TCCGGA 1 cut(s) 598
Bsp143I GATC 9 cut(s) 3, 24, 154, 1017, 1101, 1171, 1182, 1252, 1262
Bsp1720I GCTNAGC 1 cut(s) 729
Bsp68I TCGCGA 1 cut(s) 769
BspACI CCGC 9 cut(s) 115, 231, 567, 569, 842, 959, 965, 1326, 1382
BspANI GGCC 5 cut(s) 417, 634, 968, 1179, 1385
BspCNI CTCAG 3 cut(s) 69, 319, 1204
BspEI TCCGGA 1 cut(s) 598
BspFNI CGCG 5 cut(s) 233, 569, 769, 965, 1155
BspLI GGNNCC 3 cut(s) 479, 759, 835
BspMAI CTGCAG 1 cut(s) 1131
BspMI ACCTGC 2 cut(s) 538, 1125
BspPI GGATC 4 cut(s) 149, 1179, 1247, 1270
BsrI ACTGG 3 cut(s) 7, 635, 1203
BssECI CCNNGG 5 cut(s) 104, 190, 567, 660, 1256
BssHII GCGCGC 1 cut(s) 1153
BssMI GATC 9 cut(s) 3, 24, 154, 1017, 1101, 1171, 1182, 1252, 1262
BssNAI GTATAC 1 cut(s) 1074
BssNI GRCGYC 1 cut(s) 225
Bst1107I GTATAC 1 cut(s) 1074
Bst2UI CCWGG 3 cut(s) 105, 191, 662
Bst4CI ACNGT 2 cut(s) 121, 864
Bst6I CTCTTC 3 cut(s) 174, 210, 681
BstACI GRCGYC 1 cut(s) 225
BstC8I GCNNGC 3 cut(s) 767, 804, 1155
BstDEI CTNAG 7 cut(s) 56, 285, 327, 729, 1159, 1212, 1330
BstDSI CCRYGG 2 cut(s) 567, 1256
BstF5I GGATG 4 cut(s) 382, 700, 789, 920
BstFNI CGCG 5 cut(s) 233, 569, 769, 965, 1155
BstHHI GCGC 4 cut(s) 235, 1134, 1155, 1157
BstKTI GATC 9 cut(s) 6, 27, 157, 1020, 1104, 1174, 1185, 1255, 1265
BstMAI GTCTC 3 cut(s) 56, 232, 1332
BstMBI GATC 9 cut(s) 3, 24, 154, 1017, 1101, 1171, 1182, 1252, 1262
BstMCI CGRYCG 2 cut(s) 431, 963
BstMWI GCNNNNNNNGC 8 cut(s) 298, 359, 563, 572, 771, 965, 1154, 1163
BstNI CCWGG 3 cut(s) 105, 191, 662
BstSCI CCNGG 3 cut(s) 103, 189, 660
BstSFI CTRYAG 2 cut(s) 140, 1127
BstUI CGCG 5 cut(s) 233, 569, 769, 965, 1155
BstV1I GCAGC 4 cut(s) 137, 584, 798, 1141
BstX2I RGATCY 1 cut(s) 1262
BstXI CCANNNNNNTGG 2 cut(s) 397, 852
BstYI RGATCY 1 cut(s) 1262
BstZ17I GTATAC 1 cut(s) 1074
BsuI GTATCC 2 cut(s) 128, 595
BsuRI GGCC 5 cut(s) 417, 634, 968, 1179, 1385
BtgI CCRYGG 2 cut(s) 567, 1256
BtgZI GCGATG 2 cut(s) 784, 1176
BtsCI GGATG 4 cut(s) 382, 700, 789, 920
BtsIMutI CAGTG 1 cut(s) 126
BtuMI TCGCGA 1 cut(s) 769
BveI ACCTGC 2 cut(s) 538, 1125
Cac8I GCNNGC 3 cut(s) 767, 804, 1155
CaiI CAGNNNCTG 1 cut(s) 1180
CfoI GCGC 4 cut(s) 235, 1134, 1155, 1157
Cfr13I GGNCC 3 cut(s) 633, 757, 1177
Cfr42I CCGCGG 1 cut(s) 570
CseI GACGC 1 cut(s) 72
Csp6I GTAC 1 cut(s) 454
CviAII CATG 2 cut(s) 365, 391
CviQI GTAC 1 cut(s) 454
DdeI CTNAG 7 cut(s) 56, 285, 327, 729, 1159, 1212, 1330
DpnI GATC 9 cut(s) 5, 26, 156, 1019, 1103, 1173, 1184, 1254, 1264
DpnII GATC 9 cut(s) 3, 24, 154, 1017, 1101, 1171, 1182, 1252, 1262
EaeI YGGCCR 2 cut(s) 415, 966
Eam1104I CTCTTC 3 cut(s) 174, 210, 681
EarI CTCTTC 3 cut(s) 174, 210, 681
Eco32I GATATC 1 cut(s) 282
Eco47I GGWCC 1 cut(s) 757
Eco57I CTGAAG 1 cut(s) 228
EcoO109I RGGNCCY 1 cut(s) 1177
EcoRI GAATTC 1 cut(s) 256
EcoRII CCWGG 3 cut(s) 103, 189, 660
EcoRV GATATC 1 cut(s) 282
Esp3I CGTCTC 1 cut(s) 232
FaeI CATG 2 cut(s) 368, 394
FalI AAGNNNNNCTT 2 cut(s) 1142, 1174
FaqI GGGAC 1 cut(s) 743
FatI CATG 2 cut(s) 364, 390
FauI CCCGC 2 cut(s) 849, 1333
FauNDI CATATG 2 cut(s) 97, 346
FbaI TGATCA 3 cut(s) 24, 1017, 1182
FblI GTMKAC 2 cut(s) 582, 1073
Fnu4HI GCNGC 8 cut(s) 126, 567, 570, 573, 787, 966, 1130, 1383
FokI GGATG 4 cut(s) 389, 707, 776, 907
Fsp4HI GCNGC 8 cut(s) 126, 567, 570, 573, 787, 966, 1130, 1383
FspBI CTAG 6 cut(s) 72, 236, 578, 885, 1268, 1365
GlaI GCGC 4 cut(s) 234, 1133, 1154, 1156
GluI GCNGC 8 cut(s) 126, 567, 570, 573, 787, 966, 1130, 1383
GsuI CTGGAG 1 cut(s) 1356
HaeIII GGCC 5 cut(s) 417, 634, 968, 1179, 1385
HapII CCGG 2 cut(s) 599, 606
HgaI GACGC 1 cut(s) 72
HhaI GCGC 4 cut(s) 235, 1134, 1155, 1157
Hin1I GRCGYC 1 cut(s) 225
Hin1II CATG 2 cut(s) 368, 394
Hin6I GCGC 4 cut(s) 233, 1132, 1153, 1155
HinP1I GCGC 4 cut(s) 233, 1132, 1153, 1155
HincII GTYRAC 2 cut(s) 243, 1243
HindII GTYRAC 2 cut(s) 243, 1243
HindIII AAGCTT 2 cut(s) 555, 1356
HinfI GANTC 3 cut(s) 370, 433, 609
HpaI GTTAAC 1 cut(s) 1243
HpaII CCGG 2 cut(s) 599, 606
HphI GGTGA 8 cut(s) 158, 206, 310, 412, 741, 852, 906, 1311
Hpy166II GTNNAC 8 cut(s) 243, 333, 583, 628, 1074, 1243, 1319, 1348
Hpy188I TCNGA 4 cut(s) 59, 975, 1142, 1224
Hpy188III TCNNGA 8 cut(s) 173, 334, 374, 599, 768, 867, 1169, 1211
Hpy8I GTNNAC 8 cut(s) 243, 333, 583, 628, 1074, 1243, 1319, 1348
Hpy99I CGWCG 2 cut(s) 227, 743
HpyAV CCTTC 8 cut(s) 692, 891, 977, 981, 1055, 1078, 1119, 1219
HpyCH4III ACNGT 2 cut(s) 121, 864
HpyCH4IV ACGT 5 cut(s) 225, 1024, 1029, 1046, 1344
HpyCH4V TGCA 4 cut(s) 547, 774, 786, 1129
HpyF10VI GCNNNNNNNGC 8 cut(s) 298, 359, 563, 572, 771, 965, 1154, 1163
HpyF3I CTNAG 7 cut(s) 56, 285, 327, 729, 1159, 1212, 1330
HpySE526I ACGT 5 cut(s) 225, 1024, 1029, 1046, 1344
Hsp92I GRCGYC 1 cut(s) 225
Hsp92II CATG 2 cut(s) 368, 394
HspAI GCGC 4 cut(s) 233, 1132, 1153, 1155
Kpn2I TCCGGA 1 cut(s) 598
Ksp22I TGATCA 3 cut(s) 24, 1017, 1182
KspAI GTTAAC 1 cut(s) 1243
KspI CCGCGG 1 cut(s) 570
Kzo9I GATC 9 cut(s) 3, 24, 154, 1017, 1101, 1171, 1182, 1252, 1262
LmnI GCTCC 1 cut(s) 289
Lsp1109I GCAGC 4 cut(s) 137, 584, 798, 1141
LweI GCATC 6 cut(s) 58, 58, 340, 761, 798, 1000
MaeI CTAG 6 cut(s) 72, 236, 578, 885, 1268, 1365
MaeII ACGT 5 cut(s) 225, 1024, 1029, 1046, 1344
MaeIII GTNAC 4 cut(s) 864, 912, 1025, 1294
MalI GATC 9 cut(s) 5, 26, 156, 1019, 1103, 1173, 1184, 1254, 1264
MboI GATC 9 cut(s) 3, 24, 154, 1017, 1101, 1171, 1182, 1252, 1262
MflI RGATCY 1 cut(s) 1262
MhlI GDGCHC 1 cut(s) 1005
MlsI TGGCCA 1 cut(s) 417
MluCI AATT 3 cut(s) 256, 516, 931
MluNI TGGCCA 1 cut(s) 417
MlyI GAGTC 1 cut(s) 618
MmeI TCCRAC 1 cut(s) 960
Mox20I TGGCCA 1 cut(s) 417
MroI TCCGGA 1 cut(s) 598
MscI TGGCCA 1 cut(s) 417
MseI TTAA 4 cut(s) 45, 275, 1203, 1242
MslI CAYNNNNRTG 4 cut(s) 32, 395, 794, 1008
Msp20I TGGCCA 1 cut(s) 417
MspA1I CMGCKG 2 cut(s) 491, 569
MspI CCGG 2 cut(s) 599, 606
MspR9I CCNGG 3 cut(s) 105, 191, 662
Mva1269I GAATGC 1 cut(s) 788
MvaI CCWGG 3 cut(s) 105, 191, 662
MvnI CGCG 5 cut(s) 233, 569, 769, 965, 1155
MwoI GCNNNNNNNGC 8 cut(s) 298, 359, 563, 572, 771, 965, 1154, 1163
NdeI CATATG 2 cut(s) 97, 346
NdeII GATC 9 cut(s) 3, 24, 154, 1017, 1101, 1171, 1182, 1252, 1262
NlaIII CATG 2 cut(s) 368, 394
NlaIV GGNNCC 3 cut(s) 479, 759, 835
NmuCI GTSAC 3 cut(s) 864, 912, 1294
NruI TCGCGA 1 cut(s) 769
OliI CACNNNNGTG 1 cut(s) 32
PauI GCGCGC 1 cut(s) 1153
PctI GAATGC 1 cut(s) 788
PfeI GAWTC 2 cut(s) 370, 433
PflFI GACNNNGTC 1 cut(s) 1343
PkrI GCNGC 8 cut(s) 127, 568, 571, 574, 788, 967, 1131, 1384
PleI GAGTC 1 cut(s) 617
PpsI GAGTC 1 cut(s) 617
Psp1406I AACGTT 2 cut(s) 1024, 1046
Psp6I CCWGG 3 cut(s) 103, 189, 660
PspGI CCWGG 3 cut(s) 103, 189, 660
PspN4I GGNNCC 3 cut(s) 479, 759, 835
PspPI GGNCC 3 cut(s) 633, 757, 1177
PsrI GAACNNNNNNTAC 2 cut(s) 446, 478
PstI CTGCAG 1 cut(s) 1131
PstNI CAGNNNCTG 1 cut(s) 1180
PsuI RGATCY 1 cut(s) 1262
PsyI GACNNNGTC 1 cut(s) 1343
PteI GCGCGC 1 cut(s) 1153
PvuII CAGCTG 1 cut(s) 491
RruI TCGCGA 1 cut(s) 769
RsaI GTAC 1 cut(s) 455
RsaNI GTAC 1 cut(s) 454
RseI CAYNNNNRTG 4 cut(s) 32, 395, 794, 1008
SacII CCGCGG 1 cut(s) 570
SaqAI TTAA 4 cut(s) 45, 275, 1203, 1242
SatI GCNGC 8 cut(s) 126, 567, 570, 573, 787, 966, 1130, 1383
Sau3AI GATC 9 cut(s) 3, 24, 154, 1017, 1101, 1171, 1182, 1252, 1262
Sau96I GGNCC 3 cut(s) 633, 757, 1177
SchI GAGTC 1 cut(s) 618
ScrFI CCNGG 3 cut(s) 105, 191, 662
SduI GDGCHC 1 cut(s) 1005
SfaNI GCATC 6 cut(s) 58, 58, 340, 761, 798, 1000
SfcI CTRYAG 2 cut(s) 140, 1127
Sfr303I CCGCGG 1 cut(s) 570
SgrBI CCGCGG 1 cut(s) 570
SinI GGWCC 1 cut(s) 757
SmiMI CAYNNNNRTG 4 cut(s) 32, 395, 794, 1008
SmlI CTYRAG 2 cut(s) 266, 302
SmoI CTYRAG 2 cut(s) 266, 302
SpeI ACTAGT 2 cut(s) 577, 1364
Sse9I AATT 3 cut(s) 256, 516, 931
SsiI CCGC 9 cut(s) 115, 231, 567, 569, 842, 959, 965, 1326, 1382
SspMI CTAG 6 cut(s) 72, 236, 578, 885, 1268, 1365
StyD4I CCNGG 3 cut(s) 103, 189, 660
TaaI ACNGT 2 cut(s) 121, 864
TaiI ACGT 5 cut(s) 228, 1027, 1032, 1049, 1347
TaqI TCGA 3 cut(s) 427, 738, 1373
TaqII GACCGA 1 cut(s) 445
TasI AATT 3 cut(s) 256, 516, 931
TatI WGTACW 1 cut(s) 453
TauI GCSGC 4 cut(s) 569, 572, 968, 1385
TfiI GAWTC 2 cut(s) 370, 433
Tru1I TTAA 4 cut(s) 45, 275, 1203, 1242
Tru9I TTAA 4 cut(s) 45, 275, 1203, 1242
TscAI CASTG 1 cut(s) 126
TseFI GTSAC 3 cut(s) 864, 912, 1294
TseI GCWGC 4 cut(s) 125, 572, 786, 1129
Tsp45I GTSAC 3 cut(s) 864, 912, 1294
TspDTI ATGAA 4 cut(s) 216, 407, 711, 815
TspGWI ACGGA 1 cut(s) 1245
TspRI CASTG 1 cut(s) 126
Tth111I GACNNNGTC 1 cut(s) 1343
VpaK11BI GGWCC 1 cut(s) 757
XapI RAATTY 2 cut(s) 256, 516
XmiI GTMKAC 2 cut(s) 582, 1073
XspI CTAG 6 cut(s) 72, 236, 578, 885, 1268, 1365
ZraI GACGTC 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.